CN189198

Overview
NameCN189198
Unique NameCN189198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6249 contig Csv1_Contig6249:276..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN189198 vs. ExPASy Swiss-Prot
Match: RBS4_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.751e-41
Identity = 76/103 (73.79%), Postives = 88/103 (85.44%), Query Frame = -3 
Query:  237 LPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 545
            LPPLS E L KE++YL+R+ W+PC+EF  E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISFIA KP
Sbjct:   75 LPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176
[Close]
BLAST of CN189198 vs. ExPASy Swiss-Prot
Match: RBS3_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40A, chloroplastic OS=Lemna gibba GN=SSU40A PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.751e-41
Identity = 76/103 (73.79%), Postives = 88/103 (85.44%), Query Frame = -3 
Query:  237 LPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 545
            LPPLS E L KE++YL+R+ W+PC+EF  E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISFIA KP
Sbjct:   75 LPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176
[Close]
BLAST of CN189198 vs. ExPASy Swiss-Prot
Match: RBS2_LEMGI (Ribulose bisphosphate carboxylase small chain SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.751e-41
Identity = 76/103 (73.79%), Postives = 88/103 (85.44%), Query Frame = -3 
Query:  237 LPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 545
            LPPLS E L KE++YL+R+ W+PC+EF  E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISFIA KP
Sbjct:   75 LPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176
[Close]
BLAST of CN189198 vs. ExPASy Swiss-Prot
Match: RBS_SILPR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Silene pratensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 4.692e-41
Identity = 76/103 (73.79%), Postives = 87/103 (84.47%), Query Frame = -3 
Query:  237 LPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 545
            LP LS+E+LLKEINYL+  GW+PCLEFE+    VYRE++KSPGYYDGRYWTMWKLPM+GCTDA+QV  EV E +  YP + VRIIGFDNKRQVQCISFIA KP
Sbjct:   74 LPTLSEESLLKEINYLLIKGWVPCLEFEVGPAHVYRENNKSPGYYDGRYWTMWKLPMFGCTDASQVAAEVVECKNAYPDAHVRIIGFDNKRQVQCISFIAYKP 176
[Close]
BLAST of CN189198 vs. ExPASy Swiss-Prot
Match: RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 8.004e-41
Identity = 74/103 (71.84%), Postives = 89/103 (86.41%), Query Frame = -3 
Query:  237 LPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 545
            LP LS E+LLK+I YLIR+GW+PCLEF LE G+V R+++KSPGYYDGRYWTMWKLPM+GCTDA QV+KE  E +KEYP +F+R+IGFDN RQVQC+SFI  KP
Sbjct:   77 LPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178
[Close]
BLAST of CN189198 vs. ExPASy Swiss-Prot
Match: RBS2_FRIAG (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 8.004e-41
Identity = 74/103 (71.84%), Postives = 89/103 (86.41%), Query Frame = -3 
Query:  237 LPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 545
            LP LS E+LLK+I YLIR+GW+PCLEF LE G+V R+++KSPGYYDGRYWTMWKLPM+GCTDA QV+KE  E +KEYP +F+R+IGFDN RQVQC+SFI  KP
Sbjct:   77 LPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178
[Close]
BLAST of CN189198 vs. ExPASy Swiss-Prot
Match: RBS1_LEMGI (Ribulose bisphosphate carboxylase small chain SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 1.783e-40
Identity = 75/103 (72.82%), Postives = 88/103 (85.44%), Query Frame = -3 
Query:  237 LPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 545
            LPPLS E L KE++YL+R+ W+PC+EF  E G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISFIA KP
Sbjct:   71 LPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENNASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 172
[Close]
BLAST of CN189198 vs. ExPASy Swiss-Prot
Match: RBS1_FRIAG (Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.783e-40
Identity = 73/103 (70.87%), Postives = 89/103 (86.41%), Query Frame = -3 
Query:  237 LPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 545
            LP LS E+LLK+I YLIR+GW+PCLEF LE G+V R+++KSPGYYDGRYWTMWKLPM+GCTDA QV+KE  E +KEYP +F+R+IGFDN RQVQC+SFI  +P
Sbjct:   77 LPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVERP 178
[Close]
BLAST of CN189198 vs. ExPASy Swiss-Prot
Match: RBS5_FRIAG (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 5.188e-40
Identity = 73/103 (70.87%), Postives = 88/103 (85.44%), Query Frame = -3 
Query:  237 LPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 545
            LP LS E+LLK+I YLIR+GW+PCLEF LE G+V R+++KSPGYYDGRYWTMWKLPM+GCT A QV+KE  E +KEYP +F+R+IGFDN RQVQC+SFI  KP
Sbjct:   77 LPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTGAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178
[Close]
BLAST of CN189198 vs. ExPASy Swiss-Prot
Match: RBS_ZANAE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 6.776e-40
Identity = 74/105 (70.48%), Postives = 87/105 (82.86%), Query Frame = -3 
Query:  231 LPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 545
            LPPL+ E L +E++YLIR+GWIPC+EF  + G+VYRE+H SPGYYDGRYWTMWKLPM+GCTD++QVLKEV E  K YP  F RIIGFDN RQVQCISF+  KP G
Sbjct:   74 LPPLTREQLGQEVDYLIRNGWIPCIEF-CKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSKAYPDYFNRIIGFDNTRQVQCISFLTYKPEG 177
The following BLAST results are available for this feature:
BLAST of CN189198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
RBS4_LEMGI2.751e-4173.79Ribulose bisphosphate carboxylase small chain SSU4... [more]
RBS3_LEMGI2.751e-4173.79Ribulose bisphosphate carboxylase small chain SSU4... [more]
RBS2_LEMGI2.751e-4173.79Ribulose bisphosphate carboxylase small chain SSU2... [more]
RBS_SILPR4.692e-4173.79Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_FRIAG8.004e-4171.84Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_FRIAG8.004e-4171.84Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_LEMGI1.783e-4072.82Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS1_FRIAG1.783e-4070.87Ribulose bisphosphate carboxylase small chain 1/4,... [more]
RBS5_FRIAG5.188e-4070.87Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS_ZANAE6.776e-4070.48Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001H15_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189198 ID=CN189198; Name=CN189198; organism=Citrus sinensis; type=EST; length=547bp
TTTTTTACTGAAAACAAGGATTCAATTATTAAAATATATATAAAAAAAAA
ACATAGAAGCCAAAGTCGGGGAGAAAACCAAAAAAGTTTGAGCAGCAGCA
ACAGCAGCCTAAGTACAAATTAAACGCAAACCGAACCCCCATTGATCGAA
TGATCATTATGGGGGTTACACATAATAATAATCAACAATATTGCATGGGT
GGTTACACAAATTTAATTGGGAACCTAGACGCCTGGTGGCTTGGCAGCAA
TGAAACTGATGCACTGCACTTGACGCTTGTTGTCAAATCCGATAATTCGG
ACGAATGAATGTGGGTATTCCTTCTGGACCTCCCCAACCTCCTTCAAAAC
CTGGGTTGCATCTGTGCACCCATACATGGGCAGCTTCCACATTGTCCAGT
AGCGTCCATCGTAGTATCCTGGTGACTTGTGGTGCTCACGGTACACCCAT
CCTTTCTCCAACTCGAATTCCAAGCAGGGAATCCAGCCGGAGCGGATAAG
GTAATTGATTTCCTTGAGCAAAGCTTCATCGGACAGTGGCGGGAGGT
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