CN189178

Overview
NameCN189178
Unique NameCN189178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189178_ssr18 microsatellite CN189178_ssr18:18..27. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13557 contig Csv1_Contig13557:19..594. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189178 vs. ExPASy Swiss-Prot
Match: ENO_PENCH (Enolase OS=Penicillium chrysogenum GN=enoA PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.532e-40
Identity = 97/170 (57.06%), Postives = 120/170 (70.59%), Query Frame = 3
Query:   78 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGK--DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKN-LVLPVPAFNVINGGSHAGNKLA 575
            I+ + AR ++DSRGNPTVEVDV T  G + RA VPSGASTG++E +ELRDG  + + GKGV  AV NVN +IGPAL  +  D  +Q  +D ++  +LDGT N     K KLGANAIL VSLAV KA A  K +PLY HI++L+G K   VLPVP  NV+NGGSHAG +LA
Sbjct:    3 ISKIHARSVYDSRGNPTVEVDVVTETG-LHRAIVPSGASTGLHEVVELRDGDKTKWGGKGVLNAVKNVNDVIGPALIKENIDVKDQAKVDEFL-NKLDGTPN-----KGKLGANAILGVSLAVAKAAAAEKGVPLYAHISDLAGTKKPFVLPVPFQNVLNGGSHAGGRLA 165          
BLAST of CN189178 vs. ExPASy Swiss-Prot
Match: ENO_ALTMD (Enolase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=eno PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.532e-40
Identity = 96/167 (57.49%), Postives = 112/167 (67.07%), Query Frame = 3
Query:   78 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNK-NLVLPVPAFNVINGGSHAGNKL 572
            I+ +  R+I DSRGNPTVE DV    G + RAA PSGASTG  EALELRDG  S YLGKGV+KAV+ +N  I PAL GKD   Q  ID  M+  LDGT N     K+ LGANAILAVSLAV KA A  K + LY+HIA+L+G      +PVP  N+INGG HA N +
Sbjct:    4 ISRIIGREILDSRGNPTVEADVYLESGAMGRAAAPSGASTGSREALELRDGDKSRYLGKGVTKAVAAINDTISPALLGKDALAQADIDGIMI-DLDGTEN-----KETLGANAILAVSLAVAKAAAAEKGVALYEHIADLNGTSGQYSMPVPMMNIINGGEHADNNV 164          
BLAST of CN189178 vs. ExPASy Swiss-Prot
Match: ENO_ALLMI (Enolase (Fragment) OS=Alligator mississippiensis PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.532e-40
Identity = 95/149 (63.76%), Postives = 113/149 (75.84%), Query Frame = 3
Query:  138 DVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALAGKDPT--EQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLA 575
            D+ TS G + RAAVPSGASTGIYEALELRD     ++GKGVSKAV++VN  I PAL  K+ +  EQ  ID  M++ +DG+ N     K K GANAIL VSLAVCKAGA  K +PLY+HIA+L+GN  ++LPVPAFNVINGGSHAGNKLA
Sbjct:    1 DLYTSKG-LFRAAVPSGASTGIYEALELRDNDKTRFMGKGVSKAVAHVNKTIAPALISKNISVVEQEKIDRLMLE-MDGSEN-----KSKFGANAILGVSLAVCKAGAAEKGVPLYRHIADLAGNPEVILPVPAFNVINGGSHAGNKLA 142          
BLAST of CN189178 vs. ExPASy Swiss-Prot
Match: ENO_SHESW (Enolase OS=Shewanella sp. (strain W3-18-1) GN=eno PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.001e-40
Identity = 98/167 (58.68%), Postives = 109/167 (65.27%), Query Frame = 3
Query:   78 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNK-NLVLPVPAFNVINGGSHAGNKL 572
            I  V  R+I DSRGNPTVE +V    G V  AA PSGASTG  EALELRDG  S YLGKGV  AV+NVN +I  AL GKD T Q  +D  M+  LDGT N     K KLGANAILAVSLA  KA A  K IPLY HIAEL+G      +PVP  N++NGG HA N +
Sbjct:    4 IINVIGREIMDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRYLGKGVLTAVANVNGVIRTALLGKDATAQAELDQIMI-DLDGTEN-----KDKLGANAILAVSLAAAKAAAASKGIPLYAHIAELNGTPGQYSMPVPMMNILNGGEHADNNV 164          
BLAST of CN189178 vs. ExPASy Swiss-Prot
Match: ENO_SHEPC (Enolase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=eno PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.001e-40
Identity = 98/167 (58.68%), Postives = 109/167 (65.27%), Query Frame = 3
Query:   78 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNK-NLVLPVPAFNVINGGSHAGNKL 572
            I  V  R+I DSRGNPTVE +V    G V  AA PSGASTG  EALELRDG  S YLGKGV  AV+NVN +I  AL GKD T Q  +D  M+  LDGT N     K KLGANAILAVSLA  KA A  K IPLY HIAEL+G      +PVP  N++NGG HA N +
Sbjct:    4 IINVIGREIMDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRYLGKGVLTAVANVNGVIRTALLGKDATAQAELDQIMI-DLDGTEN-----KDKLGANAILAVSLAAAKAAAASKGIPLYAHIAELNGTPGQYSMPVPMMNILNGGEHADNNV 164          
BLAST of CN189178 vs. ExPASy Swiss-Prot
Match: ENO_SHEDO (Enolase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=eno PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.001e-40
Identity = 96/167 (57.49%), Postives = 110/167 (65.87%), Query Frame = 3
Query:   78 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLV-LPVPAFNVINGGSHAGNKL 572
            I  V  R+I DSRGNPTVE +V  + G +  AA PSGASTG  EALELRDG  S YLGKGV  AV+N+N +I  AL GKD   Q  +D  M+  LDGT N     K KLGANAILAVSLA  KA A  K IPLY HIAEL+G   +  +PVP  N+INGG HA N +
Sbjct:    4 IINVIGREIMDSRGNPTVEAEVHLAGGFIGMAAAPSGASTGSREALELRDGDKSRYLGKGVLNAVANINGVIKAALMGKDAAAQAELDQIMI-DLDGTEN-----KDKLGANAILAVSLAAAKAAAMSKGIPLYAHIAELNGTPGVYSMPVPMMNIINGGEHADNNV 164          
BLAST of CN189178 vs. ExPASy Swiss-Prot
Match: ENO_OCHA4 (Enolase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=eno PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.001e-40
Identity = 93/165 (56.36%), Postives = 109/165 (66.06%), Query Frame = 3
Query:   78 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKL 572
            I  +  R+I DSRGNPTVEVDV   DG   RAAVPSGASTG +EA+ELRDGGS YLGKGV KAV  VN  I  A+AG D   Q  ID  M+ +LDG+ N     K  +GANAIL VSLAV KA A    +PLY+++    G    VLPVP  N+INGG+HA N +
Sbjct:    4 IIDIVGREILDSRGNPTVEVDVVLEDGSFGRAAVPSGASTGAHEAVELRDGGSRYLGKGVEKAVEAVNGKIFDAIAGMDAESQLLIDQTMI-ELDGSAN-----KGNIGANAILGVSLAVAKAAAQATGLPLYRYV---GGANAHVLPVPMMNIINGGAHADNPI 159          
BLAST of CN189178 vs. ExPASy Swiss-Prot
Match: ENO_DESOH (Enolase OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=eno PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.001e-40
Identity = 94/168 (55.95%), Postives = 112/168 (66.67%), Query Frame = 3
Query:   72 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKL 572
            I I  V+AR+I DSRGNPTVEVDVT S G   RAAVPSGASTG  EALELRD     YLGKGV KAV NVN +IGP L G    EQ  +D+ M+  LDGT N     K KLGANAIL VS+AV +A A   ++PLY+++  +       LP+P  N++NGG+HA N L
Sbjct:    2 IEIIEVQAREILDSRGNPTVEVDVTLSGGATGRAAVPSGASTGTREALELRDTRKKRYLGKGVEKAVENVNTLIGPVLYGMPADEQFMVDSTMI-GLDGTAN-----KSKLGANAILGVSMAVARAAADAYELPLYRYLGGIHAKH---LPMPMMNIVNGGAHAANSL 160          
BLAST of CN189178 vs. ExPASy Swiss-Prot
Match: ENO_BREBN (Enolase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=eno PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.001e-40
Identity = 96/164 (58.54%), Postives = 110/164 (67.07%), Query Frame = 3
Query:   78 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGN 566
            IT + AR+I DSRGNPTVEV+V   DG + RA VPSGASTG YEA+ELRDG  S YLGKGV KAV NVN II P L G D  +Q  ID  M+ QLDGT N     K KLGANAIL VS+AV +A A    +PLY +   L G    +LPVP  N++NGG HA N
Sbjct:    4 ITDIYAREIMDSRGNPTVEVEVYLEDGSMGRADVPSGASTGAYEAVELRDGDKSRYLGKGVLKAVENVNEIIAPELIGMDALDQVGIDMAMI-QLDGTPN-----KGKLGANAILGVSMAVARAAAESLGVPLYNY---LGGFNARMLPVPMMNILNGGKHADN 158          
BLAST of CN189178 vs. ExPASy Swiss-Prot
Match: ENO_BACSU (Enolase OS=Bacillus subtilis GN=eno PE=1 SV=4)

HSP 1 Score: 165.236 bits (417), Expect = 2.001e-40
Identity = 95/166 (57.23%), Postives = 112/166 (67.47%), Query Frame = 3
Query:   78 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKL 572
            I  V AR++ DSRGNPTVEV+V T  G   RA VPSGASTG YEA+ELRDG  D YLGKGV  AV+NVN II P L G D TEQ AID  ++ +LDGT N     K KLGANAIL VS+A  +A A   +IPLY++   L G  +  LPVP  N++NGG HA N +
Sbjct:    4 IVDVYAREVLDSRGNPTVEVEVYTETGAFGRALVPSGASTGEYEAVELRDGDKDRYLGKGVLTAVNNVNEIIAPELLGFDVTEQNAIDQLLI-ELDGTEN-----KGKLGANAILGVSMACARAAADFLQIPLYQY---LGGFNSKTLPVPMMNIVNGGEHADNNV 160          
The following BLAST results are available for this feature:
BLAST of CN189178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ENO_PENCH1.532e-4057.06Enolase OS=Penicillium chrysogenum GN=enoA PE=2 SV... [more]
ENO_ALTMD1.532e-4057.49Enolase OS=Alteromonas macleodii (strain DSM 17117... [more]
ENO_ALLMI1.532e-4063.76Enolase (Fragment) OS=Alligator mississippiensis P... [more]
ENO_SHESW2.001e-4058.68Enolase OS=Shewanella sp. (strain W3-18-1) GN=eno ... [more]
ENO_SHEPC2.001e-4058.68Enolase OS=Shewanella putrefaciens (strain CN-32 /... [more]
ENO_SHEDO2.001e-4057.49Enolase OS=Shewanella denitrificans (strain OS217 ... [more]
ENO_OCHA42.001e-4056.36Enolase OS=Ochrobactrum anthropi (strain ATCC 4918... [more]
ENO_DESOH2.001e-4055.95Enolase OS=Desulfococcus oleovorans (strain DSM 62... [more]
ENO_BREBN2.001e-4058.54Enolase OS=Brevibacillus brevis (strain 47 / JCM 6... [more]
ENO_BACSU2.001e-4057.23Enolase OS=Bacillus subtilis GN=eno PE=1 SV=4[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001H01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189178 ID=CN189178; Name=CN189178; organism=Citrus sinensis; type=EST; length=576bp
CTGTTCGCACTCACAGACTCTCTCTCTCGTTCTAGATCTTTCTTCGGTTT
TCCAGTTTTCAGAAAATGGCAATAACCATCACTGCCGTCAAAGCCAGGCA
GATCTTTGACAGCCGTGGAAATCCAACGGTGGAGGTCGACGTGACAACAT
CAGATGGCCACGTGGCTAGAGCTGCTGTTCCAAGCGGTGCATCCACCGGA
ATTTATGAGGCGCTTGAACTAAGAGACGGAGGCTCTGATTACCTAGGCAA
GGGTGTATCGAAAGCTGTTAGCAATGTCAACGCCATCATTGGCCCTGCAC
TCGCTGGCAAGGACCCAACTGAGCAGACTGCTATTGACAACTATATGGTA
CAACAACTTGATGGAACTGTGAATGAGTGGGGTTGGTGCAAACAGAAGCT
TGGAGCAAACGCCATTTTGGCTGTCTCCCTAGCTGTCTGCAAGGCTGGTG
CACATGTCAAGAAGATTCCTCTTTACAAGCATATTGCCGAACTCTCTGGT
AACAAGAATTTGGTGTTGCCAGTGCCAGCATTCAATGTCATTAATGGTGG
ATCACATGCTGGAAACAAACTTGCTA
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