CN189178

Overview
NameCN189178
Unique NameCN189178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189178_ssr18 microsatellite CN189178_ssr18:18..27. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13557 contig Csv1_Contig13557:19..594. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189178 vs. ExPASy Swiss-Prot
Match: ENO_FLAPJ (Enolase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=eno PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.637e-42
Identity = 97/166 (58.43%), Postives = 112/166 (67.47%), Query Frame = 3
Query:   78 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLA 575
            I  + ARQIFDSRGNPT+EVDV T +G + RAAVPSGASTG +EA+ELRDGG  YLGKGV KAV NVN II   L G    EQ  ID  M+  LDGT N     K  LGANAIL VSLA  KA A+   +PLY++I  +S N    LPVP  N+INGGSH+   +A
Sbjct:    4 IIKIHARQIFDSRGNPTIEVDVVTENGVLGRAAVPSGASTGEHEAMELRDGGKAYLGKGVLKAVENVNTIIASELLGTSVFEQNLIDKIMI-DLDGTPN-----KSNLGANAILGVSLAAAKAAANELGLPLYRYIGGVSAN---TLPVPMMNIINGGSHSDAPIA 160          
BLAST of CN189178 vs. ExPASy Swiss-Prot
Match: ENO_CLAHE (Enolase OS=Cladosporium herbarum GN=ENO PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 1.637e-42
Identity = 98/170 (57.65%), Postives = 123/170 (72.35%), Query Frame = 3
Query:   78 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGK--DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKN-LVLPVPAFNVINGGSHAGNKLA 575
            I+ + +R ++DSRGNPTVEVD+ T  G + RA VPSGASTG +EA ELRDG  S + GKGV+KAV+NVN II PAL  +  D  +Q A+D ++  +LDGT N     K K+GANAIL VS+AV KA A  K++PLY HI++LSG K   VLPVP  NV+NGGSHAG +LA
Sbjct:    3 ISKIHSRYVYDSRGNPTVEVDIVTETG-LHRAIVPSGASTGSHEACELRDGDKSKWAGKGVTKAVANVNEIIAPALIKENLDVKDQAAVDAFL-NKLDGTTN-----KTKIGANAILGVSMAVAKAAAAEKRVPLYAHISDLSGTKKPFVLPVPFMNVVNGGSHAGGRLA 165          
BLAST of CN189178 vs. ExPASy Swiss-Prot
Match: ENO_CALS8 (Enolase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=eno PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.637e-42
Identity = 95/171 (55.56%), Postives = 119/171 (69.59%), Query Frame = 3
Query:   63 KMAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKL 572
            K+ ++ITAVKAR+I DSRGNPTVEV+V  +D  V RAAVPSGASTG++EA+ELRDG    Y+GKGV KAV NVN +I P + G +   Q  ID  M+ +LDGT N     K KLGANAIL VSLAV KA A+   +PLY++I  ++      LPVP  N++NGG HA N +
Sbjct:    2 KVDLSITAVKAREILDSRGNPTVEVEVVVNDEFVGRAAVPSGASTGMFEAVELRDGDKKRYMGKGVLKAVENVNEVIAPEIIGMNALNQVEIDRLMI-ELDGTEN-----KSKLGANAILGVSLAVAKAAANALGLPLYQYIGGVNAK---YLPVPMMNILNGGKHADNSV 163          
BLAST of CN189178 vs. ExPASy Swiss-Prot
Match: ENO_GRAFK (Enolase OS=Gramella forsetii (strain KT0803) GN=eno PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.138e-42
Identity = 97/166 (58.43%), Postives = 114/166 (68.67%), Query Frame = 3
Query:   78 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLA 575
            I  + ARQIFDSRGNPTVEVDV T +G + RAAVPSGASTG +EA+ELRDGG D++GKGV KAV NVN  I   L G    EQ  ID  M+  LDGT N     K KLGANAIL VSLAV KA A+   +PLY+++  +S N    LPVP  N+INGGSH+   +A
Sbjct:    4 ILDIHARQIFDSRGNPTVEVDVYTENGIMGRAAVPSGASTGEHEAVELRDGGKDFMGKGVQKAVDNVNGEIADHLLGFSVFEQNLIDQTMI-DLDGTPN-----KSKLGANAILGVSLAVAKAAANELNMPLYRYVGGVSAN---TLPVPMMNIINGGSHSDAPIA 160          
BLAST of CN189178 vs. ExPASy Swiss-Prot
Match: ENO1_LACLS (Enolase 1 OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=eno1 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.762e-42
Identity = 95/165 (57.58%), Postives = 118/165 (71.52%), Query Frame = 3
Query:   66 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHA 560
            M +TI  + AR+IFDSRGNPTVEVDV  +DG + RAAVPSGASTG  EA+ELRDGG+   GK VSKAV+NVN  I  AL G+ P  Q  +D+ M+ +LDGT N     K +LGANAIL VS+A+ +A A+ +KIPLY+++    G  +L LP P FNVINGG HA
Sbjct:    1 MTVTIENIHAREIFDSRGNPTVEVDVRLTDGTLGRAAVPSGASTGDREAVELRDGGARLQGKDVSKAVANVNGEIYEALKGQSPFNQAKLDHLMI-ELDGTKN-----KSRLGANAILGVSMAIARAAANSEKIPLYRYL----GGVDLELPQPFFNVINGGVHA 155          
BLAST of CN189178 vs. ExPASy Swiss-Prot
Match: ENO_RHORB (Enolase OS=Rhodotorula rubra GN=ENO PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.220e-42
Identity = 101/173 (58.38%), Postives = 123/173 (71.10%), Query Frame = 3
Query:   72 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPAL--AGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNK--NLVLPVPAFNVINGGSHAGNKLA 575
            + I+ + +R ++DSRGNPTVEV++TT  G   R+ VPSGASTG++EALELRDG  S +LGKGV KAV+NVN  I PAL  A  D  +Q  ID ++++ LDGT N     K KLGANAIL VSLA  KAGA  K +PLYKHIA++S  K    VLPVP  NV+NGGSHAG  LA
Sbjct:    1 MAISKIHSRYVYDSRGNPTVEVELTTEKG-TFRSIVPSGASTGVHEALELRDGDKSKWLGKGVLKAVANVNDTIAPALIEANIDVADQAKIDEFLLK-LDGTPN-----KAKLGANAILGVSLAAAKAGAAQKDVPLYKHIADISKAKEGKFVLPVPFQNVLNGGSHAGGDLA 166          
BLAST of CN189178 vs. ExPASy Swiss-Prot
Match: ENO_PSYA2 (Enolase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=eno PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.220e-42
Identity = 95/164 (57.93%), Postives = 116/164 (70.73%), Query Frame = 3
Query:   78 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGN 566
            I  ++AR+I DSRGNPT+E DV  +DG + RAA PSGASTG  EALELRDG  S Y+GKGV KAV+NVN+ I  AL  K+ T Q AID+ M+  LDGT N     K  LGANAILAVSLAV KA A  + +PL+++IA+L    +L +PVP  N+INGG HA N
Sbjct:   12 IKDIRAREILDSRGNPTIEADVILADGTIGRAAAPSGASTGSREALELRDGDKSRYMGKGVKKAVANVNSQIRSALMDKNVTAQQAIDDAMI-ALDGTDN-----KDNLGANAILAVSLAVAKAAAKSQSLPLHQYIADLRNQTSLTMPVPMMNIINGGEHADN 169          
BLAST of CN189178 vs. ExPASy Swiss-Prot
Match: ENO_FLAJ1 (Enolase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=eno PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.220e-42
Identity = 95/166 (57.23%), Postives = 112/166 (67.47%), Query Frame = 3
Query:   78 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLA 575
            I  V ARQI DSRGNPT+EVDV T +G + RAAVPSGASTG +EA+ELRDGG  YLGKGV  AV+NVN +I   L G    EQ  ID  M+  LDGT N     K KLGANAIL VSLA  KA A+   +PLY+++  +S N    LPVP  N+INGGSH+   +A
Sbjct:    4 IIKVHARQILDSRGNPTIEVDVVTENGVLGRAAVPSGASTGEHEAVELRDGGKAYLGKGVLNAVNNVNTVIAEELVGTSVFEQNTIDQLMI-DLDGTPN-----KSKLGANAILGVSLAAAKAAANELGLPLYRYVGGVSAN---TLPVPMMNIINGGSHSDAPIA 160          
BLAST of CN189178 vs. ExPASy Swiss-Prot
Match: ENO_THEON (Enolase OS=Thermococcus onnurineus (strain NA1) GN=eno PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 8.123e-42
Identity = 101/165 (61.21%), Postives = 114/165 (69.09%), Query Frame = 3
Query:   78 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKL 572
            ITAV AR+I DSRGNPTVEV+V T    + RAAVPSGASTG +EALELRDGG  Y GKGV +AV NVN II P L G D T Q  ID  M+ +LDGT N     K  LGANAIL VSLAV KA A+   +PLY++I    G    V+PVP  NVINGG HAGN+L
Sbjct:    7 ITAVVAREILDSRGNPTVEVEVYTPIS-MGRAAVPSGASTGTHEALELRDGGKRYHGKGVRRAVENVNKIIAPELIGMDVTWQRDIDTLML-ELDGTEN-----KSNLGANAILGVSLAVAKAAANALGLPLYQYI---GGTNAYVMPVPMSNVINGGVHAGNEL 161          
BLAST of CN189178 vs. ExPASy Swiss-Prot
Match: ENO_STRTR (Enolase OS=Streptococcus thermophilus GN=eno PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 8.123e-42
Identity = 96/165 (58.18%), Postives = 117/165 (70.91%), Query Frame = 3
Query:   66 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHA 560
            M +TI  + AR+IFDSRGNPTVEVDV  +DG + RAAVPSGASTG  EA+ELRDGG+   GKGVSKAV+NVN  I  AL G+ P  Q  +D+ M+ +LDGT N     K  LGANAIL VS+A+ +A A+ +KIPLY++     G  +L LP P FNVINGG HA
Sbjct:    1 MTVTIENIHAREIFDSRGNPTVEVDVRLTDGTLGRAAVPSGASTGDREAVELRDGGARLQGKGVSKAVANVNGEIYEALKGQSPFNQAKLDHLMI-ELDGTEN-----KSCLGANAILGVSMAIFRAAANSEKIPLYRYF----GGVDLELPQPFFNVINGGVHA 155          
The following BLAST results are available for this feature:
BLAST of CN189178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ENO_FLAPJ1.637e-4258.43Enolase OS=Flavobacterium psychrophilum (strain JI... [more]
ENO_CLAHE1.637e-4257.65Enolase OS=Cladosporium herbarum GN=ENO PE=1 SV=2[more]
ENO_CALS81.637e-4255.56Enolase OS=Caldicellulosiruptor saccharolyticus (s... [more]
ENO_GRAFK2.138e-4258.43Enolase OS=Gramella forsetii (strain KT0803) GN=en... [more]
ENO1_LACLS4.762e-4257.58Enolase 1 OS=Lactococcus lactis subsp. cremoris (s... [more]
ENO_RHORB6.220e-4258.38Enolase OS=Rhodotorula rubra GN=ENO PE=1 SV=1[more]
ENO_PSYA26.220e-4257.93Enolase OS=Psychrobacter arcticus (strain DSM 1730... [more]
ENO_FLAJ16.220e-4257.23Enolase OS=Flavobacterium johnsoniae (strain ATCC ... [more]
ENO_THEON8.123e-4261.21Enolase OS=Thermococcus onnurineus (strain NA1) GN... [more]
ENO_STRTR8.123e-4258.18Enolase OS=Streptococcus thermophilus GN=eno PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001H01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189178 ID=CN189178; Name=CN189178; organism=Citrus sinensis; type=EST; length=576bp
CTGTTCGCACTCACAGACTCTCTCTCTCGTTCTAGATCTTTCTTCGGTTT
TCCAGTTTTCAGAAAATGGCAATAACCATCACTGCCGTCAAAGCCAGGCA
GATCTTTGACAGCCGTGGAAATCCAACGGTGGAGGTCGACGTGACAACAT
CAGATGGCCACGTGGCTAGAGCTGCTGTTCCAAGCGGTGCATCCACCGGA
ATTTATGAGGCGCTTGAACTAAGAGACGGAGGCTCTGATTACCTAGGCAA
GGGTGTATCGAAAGCTGTTAGCAATGTCAACGCCATCATTGGCCCTGCAC
TCGCTGGCAAGGACCCAACTGAGCAGACTGCTATTGACAACTATATGGTA
CAACAACTTGATGGAACTGTGAATGAGTGGGGTTGGTGCAAACAGAAGCT
TGGAGCAAACGCCATTTTGGCTGTCTCCCTAGCTGTCTGCAAGGCTGGTG
CACATGTCAAGAAGATTCCTCTTTACAAGCATATTGCCGAACTCTCTGGT
AACAAGAATTTGGTGTTGCCAGTGCCAGCATTCAATGTCATTAATGGTGG
ATCACATGCTGGAAACAAACTTGCTA
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