CN189178

Overview
NameCN189178
Unique NameCN189178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189178_ssr18 microsatellite CN189178_ssr18:18..27. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13557 contig Csv1_Contig13557:19..594. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189178 vs. ExPASy Swiss-Prot
Match: ENO_PSEMY (Enolase OS=Pseudomonas mendocina (strain ymp) GN=eno PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 8.123e-42
Identity = 96/167 (57.49%), Postives = 112/167 (67.07%), Query Frame = 3
Query:   78 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLV-LPVPAFNVINGGSHAGNKL 572
            I  +K R++ DSRGNPTVE DV    G V  A  PSGASTG  EALELRDG  S YLGKGV KAV+N+N  I   L GKD T+Q A+D  M+ +LDGT N     K KLGANAILAVSLA  KA A  K +PLY HIA+L+G   +  +PVP  N+INGG HA N +
Sbjct:    4 IVDIKGREVLDSRGNPTVEADVILEGGIVGSACAPSGASTGSREALELRDGDKSRYLGKGVLKAVANINGPIRDLLLGKDATDQQALDRAMI-ELDGTEN-----KAKLGANAILAVSLAAAKAAAQAKGVPLYAHIADLNGTPGVYSMPVPMMNIINGGEHADNNV 164          
BLAST of CN189178 vs. ExPASy Swiss-Prot
Match: ENO_NEUCR (Enolase OS=Neurospora crassa GN=NCU10042 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 8.123e-42
Identity = 100/170 (58.82%), Postives = 122/170 (71.76%), Query Frame = 3
Query:   78 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGK--DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKN-LVLPVPAFNVINGGSHAGNKLA 575
            I+ + AR ++DSRGNPTVEVDV T  G + RA VPSGASTG +EA ELRDG  + + GKGV KAV NVN +IGPAL  +  D  +Q+ +D +++  LDGT N     K KLGANAIL VSLAV KAGA  K +PLY HI++L+G K   VLPVP  NV+NGGSHAG +LA
Sbjct:    3 ISKIHARYVYDSRGNPTVEVDVVTELG-LHRAIVPSGASTGQHEACELRDGDKTKWGGKGVLKAVQNVNEVIGPALIKENIDVKDQSKVDKFLID-LDGTPN-----KTKLGANAILGVSLAVAKAGAAEKGVPLYAHISDLAGTKKPYVLPVPFMNVLNGGSHAGGRLA 165          
BLAST of CN189178 vs. ExPASy Swiss-Prot
Match: ENO1_YEAST (Enolase 1 OS=Saccharomyces cerevisiae GN=ENO1 PE=1 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 8.123e-42
Identity = 97/173 (56.07%), Postives = 123/173 (71.10%), Query Frame = 3
Query:   72 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPAL--AGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKN--LVLPVPAFNVINGGSHAGNKLA 575
            + ++ V AR ++DSRGNPTVEV++TT  G V R+ VPSGASTG++EALE+RDG  S ++GKGV  AV NVN +I PA   A  D  +Q A+D++++  LDGT N     K KLGANAIL VSLA  +A A  K +PLYKH+A+LS +K    VLPVP  NV+NGGSHAG  LA
Sbjct:    1 MAVSKVYARSVYDSRGNPTVEVELTTEKG-VFRSIVPSGASTGVHEALEMRDGDKSKWMGKGVLHAVKNVNDVIAPAFVKANIDVKDQKAVDDFLIS-LDGTAN-----KSKLGANAILGVSLAASRAAAAEKNVPLYKHLADLSKSKTSPYVLPVPFLNVLNGGSHAGGALA 166          
BLAST of CN189178 vs. ExPASy Swiss-Prot
Match: ENO_RHIEC (Enolase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=eno PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.061e-41
Identity = 94/165 (56.97%), Postives = 112/165 (67.88%), Query Frame = 3
Query:   78 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKL 572
            IT + AR+I DSRGNPTVEVDV   DG + RAAVPSGASTG +EA+ELRDGG  YLGKGV KAV   N  I  A+ G D   Q  IDN M+ +LDGT N     K +LGANAIL VSLAV KA A    +PLY+++   S +   +LPVP  N+INGG+HA N +
Sbjct:    4 ITDIIAREILDSRGNPTVEVDVYLEDGSMGRAAVPSGASTGAHEAVELRDGGKRYLGKGVEKAVEAANTEIFDAIGGIDAENQIQIDNIMI-ELDGTPN-----KSRLGANAILGVSLAVAKAAAQASGLPLYRYVGGASAS---LLPVPMMNIINGGAHADNPI 159          
BLAST of CN189178 vs. ExPASy Swiss-Prot
Match: ENO_RHILW (Enolase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=eno PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.386e-41
Identity = 94/165 (56.97%), Postives = 111/165 (67.27%), Query Frame = 3
Query:   78 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKL 572
            IT + AR+I DSRGNPTVEVDV   DG + RAAVPSGASTG +EA+ELRDGG  YLGKGV KAV   N  I  A+ G D   Q  IDN M+ +LDGT N     K +LGANAIL VSLAV KA A    +PLY+++    G    +LPVP  N+INGG+HA N +
Sbjct:    4 ITDIIAREILDSRGNPTVEVDVYLEDGSMGRAAVPSGASTGAHEAVELRDGGKRYLGKGVQKAVDAANTEIFDAIGGIDAENQIQIDNIMI-ELDGTPN-----KSRLGANAILGVSLAVAKAAAQASGLPLYRYV---GGASACLLPVPMMNIINGGAHADNPI 159          
BLAST of CN189178 vs. ExPASy Swiss-Prot
Match: ENO_RHIL3 (Enolase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=eno PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.386e-41
Identity = 94/165 (56.97%), Postives = 111/165 (67.27%), Query Frame = 3
Query:   78 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKL 572
            IT + AR+I DSRGNPTVEVDV   DG + RAAVPSGASTG +EA+ELRDGG  YLGKGV KAV   N  I  A+ G D   Q  IDN M+ +LDGT N     K +LGANAIL VSLAV KA A    +PLY+++    G    +LPVP  N+INGG+HA N +
Sbjct:    4 ITDIIAREILDSRGNPTVEVDVYLEDGSMGRAAVPSGASTGAHEAVELRDGGKRYLGKGVEKAVEAANTEIFDAIGGIDAENQIQIDNIMI-ELDGTPN-----KSRLGANAILGVSLAVAKAAAQASGLPLYRYV---GGASACLLPVPMMNIINGGAHADNPI 159          
BLAST of CN189178 vs. ExPASy Swiss-Prot
Match: ENO_PYRHO (Enolase OS=Pyrococcus horikoshii GN=eno PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.386e-41
Identity = 100/165 (60.61%), Postives = 115/165 (69.70%), Query Frame = 3
Query:   78 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKL 572
            ITA+ AR+I DSRGNPTVEVDV T    + RAAVPSGASTG +EA+ELRDGG  Y GKGV +AV NVN II P L G D   Q  ID  ++ +LDGT N     K  LGANAILAVSLAV KA A+  ++PLY++   L G    VLPVP  NVINGG HAGN+L
Sbjct:    7 ITAIVAREILDSRGNPTVEVDVHTPIA-MGRAAVPSGASTGTHEAVELRDGGKRYHGKGVRRAVENVNKIIAPELIGMDVRWQREIDKLLI-ELDGTEN-----KSNLGANAILAVSLAVAKAAANSLELPLYQY---LGGVNAYVLPVPLSNVINGGVHAGNEL 161          
BLAST of CN189178 vs. ExPASy Swiss-Prot
Match: ENO_AGRVS (Enolase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=eno PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.386e-41
Identity = 94/165 (56.97%), Postives = 112/165 (67.88%), Query Frame = 3
Query:   78 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKL 572
            IT + AR+I DSRGNPTVEVDV   DG + RAAVPSGASTG +EA+ELRDGG  YLGKGV KAV  VN+ I  A+ G D   Q  ID  M ++LDGT N     K +LGANAIL VSLAV KA A    +PLY+++    G    +LPVP  N+INGG+HA N +
Sbjct:    4 ITDIIAREILDSRGNPTVEVDVYLEDGSMGRAAVPSGASTGAHEAVELRDGGKRYLGKGVEKAVEAVNSEIYDAIGGHDAENQIQIDTIM-RELDGTPN-----KSRLGANAILGVSLAVAKAAAEASGLPLYRYV---GGPNARILPVPMMNIINGGAHADNPI 159          
BLAST of CN189178 vs. ExPASy Swiss-Prot
Match: ENO2_CANGA (Enolase 2 OS=Candida glabrata GN=ENO2 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.810e-41
Identity = 97/173 (56.07%), Postives = 122/173 (70.52%), Query Frame = 3
Query:   72 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPAL--AGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKN--LVLPVPAFNVINGGSHAGNKLA 575
            + ++ V AR ++DSRGNPTVEV++TT  G V R+ VPSGASTGI+EALE+RDG  S +LGKGV  AV NVN +I PA   A  D  +Q A+D+ ++  LDGT N     K KLGANAIL VS+A  +A A  K +PLY+H+A+LS +K    VLPVP  NV+NGGSHAG  LA
Sbjct:    1 MAVSKVYARSVYDSRGNPTVEVELTTEKG-VFRSIVPSGASTGIHEALEMRDGDKSKWLGKGVENAVKNVNDVIAPAFVKANVDIKDQKAVDDLLLS-LDGTAN-----KSKLGANAILGVSMAAARAAAAEKNVPLYQHLADLSDSKTSPFVLPVPFLNVLNGGSHAGGALA 166          
BLAST of CN189178 vs. ExPASy Swiss-Prot
Match: ENO_THEAB (Enolase OS=Thermosipho africanus (strain TCF52B) GN=eno PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.364e-41
Identity = 98/170 (57.65%), Postives = 116/170 (68.24%), Query Frame = 3
Query:   66 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKL 572
            M I I  V AR++ DSRGNPTVEV+V   DG + RA VPSGASTG +EALELRDG    YLGKGV KAV NVN +I P L G +  +Q  IDN ++ +LDGT N     K KLGANAIL VS+AV +A A+  ++PLYK+   L G    VLPVP  NVINGG+HA N L
Sbjct:    1 MYIEIIDVFAREVLDSRGNPTVEVEVMLEDGSIGRAIVPSGASTGKFEALELRDGDKKRYLGKGVLKAVENVNELIAPKLLGLNAYDQVYIDNVLL-ELDGTEN-----KSKLGANAILGVSMAVARAAANSLQLPLYKY---LGGVNAKVLPVPLMNVINGGAHADNNL 161          
The following BLAST results are available for this feature:
BLAST of CN189178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ENO_PSEMY8.123e-4257.49Enolase OS=Pseudomonas mendocina (strain ymp) GN=e... [more]
ENO_NEUCR8.123e-4258.82Enolase OS=Neurospora crassa GN=NCU10042 PE=3 SV=1[more]
ENO1_YEAST8.123e-4256.07Enolase 1 OS=Saccharomyces cerevisiae GN=ENO1 PE=1... [more]
ENO_RHIEC1.061e-4156.97Enolase OS=Rhizobium etli (strain CFN 42 / ATCC 51... [more]
ENO_RHILW1.386e-4156.97Enolase OS=Rhizobium leguminosarum bv. trifolii (s... [more]
ENO_RHIL31.386e-4156.97Enolase OS=Rhizobium leguminosarum bv. viciae (str... [more]
ENO_PYRHO1.386e-4160.61Enolase OS=Pyrococcus horikoshii GN=eno PE=3 SV=1[more]
ENO_AGRVS1.386e-4156.97Enolase OS=Agrobacterium vitis (strain S4 / ATCC B... [more]
ENO2_CANGA1.810e-4156.07Enolase 2 OS=Candida glabrata GN=ENO2 PE=3 SV=1[more]
ENO_THEAB2.364e-4157.65Enolase OS=Thermosipho africanus (strain TCF52B) G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001H01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189178 ID=CN189178; Name=CN189178; organism=Citrus sinensis; type=EST; length=576bp
CTGTTCGCACTCACAGACTCTCTCTCTCGTTCTAGATCTTTCTTCGGTTT
TCCAGTTTTCAGAAAATGGCAATAACCATCACTGCCGTCAAAGCCAGGCA
GATCTTTGACAGCCGTGGAAATCCAACGGTGGAGGTCGACGTGACAACAT
CAGATGGCCACGTGGCTAGAGCTGCTGTTCCAAGCGGTGCATCCACCGGA
ATTTATGAGGCGCTTGAACTAAGAGACGGAGGCTCTGATTACCTAGGCAA
GGGTGTATCGAAAGCTGTTAGCAATGTCAACGCCATCATTGGCCCTGCAC
TCGCTGGCAAGGACCCAACTGAGCAGACTGCTATTGACAACTATATGGTA
CAACAACTTGATGGAACTGTGAATGAGTGGGGTTGGTGCAAACAGAAGCT
TGGAGCAAACGCCATTTTGGCTGTCTCCCTAGCTGTCTGCAAGGCTGGTG
CACATGTCAAGAAGATTCCTCTTTACAAGCATATTGCCGAACTCTCTGGT
AACAAGAATTTGGTGTTGCCAGTGCCAGCATTCAATGTCATTAATGGTGG
ATCACATGCTGGAAACAAACTTGCTA
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