CN189173

Overview
NameCN189173
Unique NameCN189173
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2712 contig Csv1_Contig2712:1..635. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN189173 vs. ExPASy Swiss-Prot
Match: PPP5_MOUSE (Serine/threonine-protein phosphatase 5 OS=Mus musculus GN=Ppp5c PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.173e-11
Identity = 49/128 (38.28%), Postives = 67/128 (52.34%), Query Frame = -1 
Query:  223 DLLWSDPSMKLGLSENTERGIGLLWGPDSTEEFLKKFSLKLIIRSHEGPDARQKRPDLAGMDNGYTIDHDVESGMCITLFSAPDYPQFQATEERFRNKGAYIVLKPPKFDIPDFNVFEAVTPRPDVNP 606
            DLLWSDP  + G S + +RG+   +GPD T+ FL++  L  IIRSHE                GY + H    G C+T+FSAP+Y       ++  NK +YI L+      P F+ F AV P P+V P
Sbjct:  383 DLLWSDPQPQNGRSVS-KRGVSCQFGPDVTKAFLEENQLDYIIRSHE------------VKAEGYEVAH---GGRCVTVFSAPNYC------DQMGNKASYIHLQGSDLR-PQFHQFTAV-PHPNVKP 486
[Close]
BLAST of CN189173 vs. ExPASy Swiss-Prot
Match: PPP5_HUMAN (Serine/threonine-protein phosphatase 5 OS=Homo sapiens GN=PPP5C PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.173e-11
Identity = 49/128 (38.28%), Postives = 68/128 (53.12%), Query Frame = -1 
Query:  223 DLLWSDPSMKLGLSENTERGIGLLWGPDSTEEFLKKFSLKLIIRSHEGPDARQKRPDLAGMDNGYTIDHDVESGMCITLFSAPDYPQFQATEERFRNKGAYIVLKPPKFDIPDFNVFEAVTPRPDVNP 606
            DLLWSDP  + G S + +RG+   +GPD T+ FL++ +L  IIRSHE                GY + H    G C+T+FSAP+Y       ++  NK +YI L+      P F+ F AV P P+V P
Sbjct:  383 DLLWSDPQPQNGRSIS-KRGVSCQFGPDVTKAFLEENNLDYIIRSHE------------VKAEGYEVAH---GGRCVTVFSAPNYC------DQMGNKASYIHLQGSDLR-PQFHQFTAV-PHPNVKP 486
The following BLAST results are available for this feature:
BLAST of CN189173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PPP5_MOUSE3.173e-1138.28Serine/threonine-protein phosphatase 5 OS=Mus musc... [more]
PPP5_HUMAN3.173e-1138.28Serine/threonine-protein phosphatase 5 OS=Homo sap... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001G23_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001G23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189173 ID=CN189173; Name=CN189173; organism=Citrus sinensis; type=EST; length=636bp
TCTTTTTAATCAAGAGTTATGAGACAAACAATGCGTTTATTCAGATAAAA
CTTTAAATGCAGGTTTCATACAAAAAGAGCAGCTTTCAAGAGAAACCAAA
TAAAAATAATCTTTTGAAGTGATATGTACAACTTGAATGTTTCATAATCT
TCATGTGCTAGGCCCCATTGATGCCAACTCCAACTCCTCATCGGAGTCTA
TCGCATTCTTGAAGTCATAAAAGGGATTGACATCTGGTCTTGGAGTGACT
GCTTCAAAAACATTAAAGTCTGGAATGTCAAATTTAGGAGGTTTTAATAC
AATATAAGCCCCCTTGTTCCTGAACCTTTCTTCTGTTGCCTGAAACTGTG
GGTAGTCTGGAGCACTAAACAGAGTGATACACATCCCTGATTCTACGTCA
TGATCTATTGTATAGCCATTATCCATTCCTGCTAAATCAGGTCTTTTTTG
TCTTGCATCTGGCCCTTCATGTGATCTAATAATTAACTTTAGACTAAACT
TTTTTAAGAACTCCTCAGTGCTATCAGGACCCCATAACAGACCGATGCCT
CTTTCAGTATTTTCAGAAAGACCAAGTTTCATTGATGGATCTGACCAGAG
AAGATCACCCGGAATCAAGTTTGAACTGAGCTGCGG
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