CN189172

Overview
NameCN189172
Unique NameCN189172
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189172_ssr670 microsatellite CN189172_ssr670:670..681. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1647 contig Csv1_Contig1647:573..1338. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189172 vs. ExPASy Swiss-Prot
Match: CALX_HELTU (Calnexin homolog OS=Helianthus tuberosus PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.813e-28
Identity = 80/219 (36.53%), Postives = 109/219 (49.77%), Query Frame = 1
Query:    1 EELTHVYTFILRPDATYSILIDNVEKQSGSLYSDWD----LLPPKTIKDPDAKKPEDWDDKEYIPDP-------------------EDKKPEGY-DDIPKEIXXXXXXXXXXXXXXXXXXXXXPTIPNPEYK-----GPWKPKKIKNPNYKGKWKAPMIDNPDFK--------DDPDLYVY--PN---LKYVGIELWQVKSGTMFDNVLVSDDPEYANK 531
            ++LTHVYT +++PD    ILID  EK+  +  S  D    L+P KTI DPD KKPEDWD++  IPDP                   E +KPEG+ DD P+EI                     P I NP+ +     G W+    +NP YKGKW AP+IDNP +K         +PD +    PN   +  +GIE    + G +FDN+L++ D + A K
Sbjct:  181 DKLTHVYTAVIKPDNELVILIDGEEKKKANFLSSEDFEPALIPTKTIPDPDDKKPEDWDERAKIPDPEATKPDDWDEDAPMEILDEEAEKPEGWLDDEPEEIDDPEAVKPEDWDDEEDGEWEAPQIENPKCESAPGCGEWRRPLKRNPAYKGKWHAPLIDNPAYKGIWKPREIPNPDYFELEKPNFEPIAAIGIEDLDQQDGILFDNILIASDEKTAAK 399          
BLAST of CN189172 vs. ExPASy Swiss-Prot
Match: CLGN_BOVIN (Calmegin OS=Bos taurus GN=CLGN PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.162e-27
Identity = 70/220 (31.82%), Postives = 102/220 (46.36%), Query Frame = 1
Query:   10 THVYTFILRPDATYSILIDNVEKQSGSLYSDW--DLLPPKTIKDPDAKKPEDWDDKEYIPD-----PED--------------KKPEGYDDIPKEIXXXXXXXXXXXXXXXXXXXXX------------------PTIPNPEYKGPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWG 552
            TH+YT ++ PD T+ +LID +    GSL  D    + PPK I+DP  +KP+DWD++  IPD     PED               KP+G+ D   E                                        P I NP+YKG W+P  I NPNY+G W    I NPD+ +D   ++  + + +G+ELW + S   FDN ++  + E A++ A + WG
Sbjct:  222 THLYTLVMNPDDTFEVLIDQIVVNKGSLLEDVVPPINPPKEIEDPTDEKPDDWDERAKIPDASAVKPEDWDESEPPQIVDSSAVKPDGWLDNEPEFIPDPNAEKPFDWNEDMDGEWEAPHISNPACRIGCGEWSPPMIDNPKYKGIWRPPMIDNPNYQGIWSPRKIPNPDYFEDNHPFLLTSFRALGLELWSMTSDIYFDNFIICSEKEVADRWAADGWG 441          
BLAST of CN189172 vs. ExPASy Swiss-Prot
Match: CALX_SCHPO (Calnexin homolog OS=Schizosaccharomyces pombe GN=cal1 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.192e-26
Identity = 75/227 (33.04%), Postives = 99/227 (43.61%), Query Frame = 1
Query:    7 LTHVYTFILRPDATYSILIDNVEKQSGSLY--------------------------------------SDWDLLPPKTIKDPDAKKPEDW--DDKEYIPDPEDKKPEGYDD------IPKEIXXXXXXXXXXXXXXXXXXXXXPTIPNPEYKGPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETW 549
            +T++YT I++PD T+ + I+    + GSL+                                       DWD   P+ I DPDA KPEDW  D+  YIPDPE +KPE +DD      IP EI                     P I NP Y+GPW P  I NP + G+W    I NPD+ DD     +  L  VG ELW ++    F N+ V    E A +L  ET+
Sbjct:  200 ITNLYTLIVKPDQTFEVRINGDVVRQGSLFYDFIPPVLPPVEIYDPEDIKPADWVDEPEIPDPNAVKPDDWDEDAPRMIPDPDAVKPEDWLEDEPLYIPDPEAQKPEDWDDEEDGDWIPSEIINPKCIEGAGCGEWKP-----PMIRNPNYRGPWSPPMIPNPEFIGEWYPRKIPNPDYFDDDHPSHFGPLYGVGFELWTMQPNIRFSNIYVGHSIEDAERLGNETF 421          
BLAST of CN189172 vs. ExPASy Swiss-Prot
Match: CALX_CAEEL (Calnexin homolog OS=Caenorhabditis elegans GN=cnx-1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.499e-24
Identity = 64/221 (28.96%), Postives = 101/221 (45.70%), Query Frame = 1
Query:   10 THVYTFILRPDATYSILID--------------------------------------NVEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKE--YIPDPEDKKPEGYD-DIPKEIXXXXXXXXXXXXXXXXXXXXXPTIPNPEYKGPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETW 549
            TH++T +++P   YS+ +D                                      N+E +S     DWD   P+++ D  A KP DW+++E   I DPE KKP+ +D D+                         PTI NP+YKG W   KI NP +KGKW A +IDNP++ +         +  VGIE+W +    +FDN+L++   E ++ +A++T+
Sbjct:  227 THLFTLVVKPTGEYSVSVDGKSLYYGNMMSDVTPALTPPKQIFDETDLKPVDWDERENIEDESAVKPDDWDENEPQSVVDEAATKPYDWNEEENELIADPEAKKPQDWDEDMDGSWEAPLIDNPACKGLSGCGTWKAPTIKNPKYKGKWIRPKISNPAFKGKWTARLIDNPNYFEPKPFAGLAPITAVGIEMWTMSENILFDNILITSSEEDSSDVAKQTF 447          
BLAST of CN189172 vs. ExPASy Swiss-Prot
Match: CALR3_HUMAN (Calreticulin-3 OS=Homo sapiens GN=CALR3 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 9.528e-22
Identity = 59/182 (32.42%), Postives = 90/182 (49.45%), Query Frame = 1
Query:   10 THVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIXXXXXXXXXXXXXXXXXXXXXPTIPNPEYKGPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWGK 555
            TH+YT ILRPD +Y + ID    +SGS+  DW+L   K  K+    + +DW+  +      D K + ++   K                       P +  P Y+   KP+ I    +K  W    + N D+    DL  + N+  +G+ELWQV+SGT+FDN L++DD EYA+   + TWG+
Sbjct:  169 THLYTLILRPDLSYDVKIDGQSIESGSIEYDWNLTSLK--KETSPAESKDWEQTK------DNKAQDWE---KHFLDASTSKQSDWNGDLDGDWPAPMLQKPPYQDGLKPEGI----HKDVWLHRKMKNTDYLTQYDLSEFENIGAIGLELWQVRSGTIFDNFLITDDEEYADNFGKATWGE 335          
BLAST of CN189172 vs. ExPASy Swiss-Prot
Match: CALR3_BOVIN (Calreticulin-3 OS=Bos taurus GN=CALR3 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.426e-19
Identity = 60/185 (32.43%), Postives = 85/185 (45.95%), Query Frame = 1
Query:    1 EELTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIXXXXXXXXXXXXXXXXXXXXXPTIPNPEYKGPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWGK 555
            +  TH+YT +LRPD TY + ID    +SGS+  DW L   K ++   A + E WD        +DK      D  K                         +  P Y+   KP+ I     K  W    + N  +  + DL  + N+  VG+ELWQV+SGT+FDN L++DD EYA    + TWG+
Sbjct:  166 DSFTHLYTLVLRPDLTYEVKIDGQSIESGSIEYDWQLTSLKKMEKASA-EAEGWDQA-----AKDKS----QDWEKHFLDASASKPSDWKGELDGDWQAAMLQKPPYQDGLKPEGID----KDVWLHQKMKN-SYLTEYDLSEFENIGAVGLELWQVRSGTIFDNFLITDDEEYAENFGKATWGE 335          
The following BLAST results are available for this feature:
BLAST of CN189172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CALX_HELTU6.813e-2836.53Calnexin homolog OS=Helianthus tuberosus PE=2 SV=1[more]
CLGN_BOVIN1.162e-2731.82Calmegin OS=Bos taurus GN=CLGN PE=2 SV=1[more]
CALX_SCHPO2.192e-2633.04Calnexin homolog OS=Schizosaccharomyces pombe GN=c... [more]
CALX_CAEEL3.499e-2428.96Calnexin homolog OS=Caenorhabditis elegans GN=cnx-... [more]
CALR3_HUMAN9.528e-2232.42Calreticulin-3 OS=Homo sapiens GN=CALR3 PE=1 SV=2[more]
CALR3_BOVIN4.426e-1932.43Calreticulin-3 OS=Bos taurus GN=CALR3 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001G22_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001G22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189172 ID=CN189172; Name=CN189172; organism=Citrus sinensis; type=EST; length=766bp
GAGGAACTCACTCATGTTTATACTTTCATCCTCCGTCCAGATGCTACTTA
CAGCATCCTCATTGACAATGTGGAGAAACAATCTGGTAGCTTGTACTCTG
ATTGGGATCTCCTCCCTCCAAAGACCATCAAGGATCCTGACGCCAAGAAA
CCTGAAGACTGGGACGACAAAGAATATATTCCCGATCCTGAAGACAAGAA
GCCAGAGGGCTATGATGACATTCCAAAGGAGATAACAGATCCTGATGCCA
AGAAGCCTGATGATTGGGATGATGAGGAAGATGGTGAATGGACAGCTCCA
ACCATCCCTAACCCAGAGTACAAGGGTCCATGGAAGCCAAAGAAAATTAA
GAACCCTAATTACAAGGGCAAGTGGAAGGCTCCAATGATTGACAACCCAG
ATTTCAAGGATGACCCAGACCTTTATGTGTATCCCAACTTGAAGTATGTT
GGCATTGAGTTGTGGCAGGTGAAATCTGGAACCATGTTTGACAATGTCTT
GGTTAGTGATGATCCAGAGTATGCCAATAAGTTGGCCGAAGAAACATGGG
GAAAGCATAAGGATGCCGAGAAGGCAGCATTTGATGAGGCCGAGAAGAAG
AGAGAGGAGGAGGAATCAAAGGACGCACCTGATTCTGATGCTGAGGATAA
TGATGACGATGACACTGAAGATGATGATGATGCTGATACTGAAACCAAAT
CAGACTCCAGCAGCGGAGACGCAGACAAGGATGTACATGATGAGCTTGTA
GGGAAAATGCTATGAT
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