CN189170

Overview
NameCN189170
Unique NameCN189170
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2146 contig Csv1_Contig2146:20..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189170 vs. ExPASy Swiss-Prot
Match: SKP1_CAVPO (S-phase kinase-associated protein 1 OS=Cavia porcellus GN=SKP1 PE=2 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 6.504e-45
Identity = 92/159 (57.86%), Postives = 118/159 (74.21%), Query Frame = 2
Query:   53 ITLKSSDGETFEVEETVALESQTIKHMVED-----DCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTE--DDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 508
            I L+SSDGE FEV+  +A +S TIK M+ED     +  D  +PLPNV + IL KVI++C  H +     + D+   +  DD+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CN189170 vs. ExPASy Swiss-Prot
Match: SKP1_BOVIN (S-phase kinase-associated protein 1 OS=Bos taurus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.504e-45
Identity = 92/159 (57.86%), Postives = 118/159 (74.21%), Query Frame = 2
Query:   53 ITLKSSDGETFEVEETVALESQTIKHMVED-----DCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTE--DDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 508
            I L+SSDGE FEV+  +A +S TIK M+ED     +  D  +PLPNV + IL KVI++C  H +     + D+   +  DD+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CN189170 vs. ExPASy Swiss-Prot
Match: ASK16_ARATH (SKP1-like protein 16 OS=Arabidopsis thaliana GN=ASK16 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.449e-44
Identity = 89/166 (53.61%), Postives = 117/166 (70.48%), Query Frame = 2
Query:   41 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKD---------DKSTEDDLKTWDADFVK-VDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 508
            S  KI L SSD E+FEVEE VA + + I HM++DDCAD  IPL NVT  IL+ VIEYCKKHV     D  D         ++  +++L+TWDA+F+K  D  T+  LILA NYLN++ LL LTCQTVAD +K  +PEE+R+ FNI+ND++P+EE+ +R+EN WAFE
Sbjct:    2 SSNKIVLTSSDDESFEVEEAVARKLKVIAHMIDDDCADKAIPLENVTGNILALVIEYCKKHVLDDVDDSDDSTEATSENVNEEAKNELRTWDAEFMKEFDMETVMKLILAVNYLNVQDLLGLTCQTVADHMKDMSPEEVRELFNIENDYTPEEEDAIRKENAWAFE 167          
BLAST of CN189170 vs. ExPASy Swiss-Prot
Match: ASK19_ARATH (SKP1-like protein 19 OS=Arabidopsis thaliana GN=ASK19 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.892e-44
Identity = 99/189 (52.38%), Postives = 122/189 (64.55%), Query Frame = 2
Query:   41 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVE-----------AGSGDKK--------DD----KSTEDD---------LKTWDADFVK-VDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 508
            S KKI L SSDGE+F+VEE VA + Q + H++EDDCA   IP+PNVT  IL+KVIEYCKKHVE           +  GDK         DD    +STE D         L  WDA F+K  D  T+FD+ILAANYLN++GL DL  +T+AD IK  TPEE+R+ FNI+NDF+P+EEE +R EN W FE
Sbjct:    2 SSKKIVLTSSDGESFKVEEVVARKLQIVGHIIEDDCATNKIPIPNVTGEILAKVIEYCKKHVEDDDDVVETHESSTKGDKTVEEAKKKPDDVAVPESTEGDDEAEDKKEKLNEWDAKFMKDFDIKTIFDIILAANYLNVQGLFDLCSKTIADYIKDMTPEEVRELFNIENDFTPEEEEAIRNENAWTFE 190          
BLAST of CN189170 vs. ExPASy Swiss-Prot
Match: ASK18_ARATH (SKP1-like protein 18 OS=Arabidopsis thaliana GN=ASK18 PE=1 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 9.391e-44
Identity = 88/156 (56.41%), Postives = 114/156 (73.08%), Query Frame = 2
Query:   41 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDADFV-KVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAF 505
            S  KI L SSDGE+FE++E VA +   I HM+ED+CA   IPL NVT  ILSK+IEY K HV   S ++ +D+  + +L +WDA F+ K+D  T+F +ILAANYLN +GLL    QTVAD IK KTPEE+R+ FNI+NDF+P+EEEE+R+EN W F
Sbjct:    2 SSNKILLTSSDGESFEIDEAVARKFLIIVHMMEDNCAGEAIPLENVTGDILSKIIEYAKMHVNEPS-EEDEDEEAKKNLDSWDAKFMEKLDLETIFKIILAANYLNFEGLLGFASQTVADYIKDKTPEEVREIFNIENDFTPEEEEEIRKENAWTF 156          
BLAST of CN189170 vs. ExPASy Swiss-Prot
Match: ASK5_ARATH (SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK5 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.950e-43
Identity = 90/159 (56.60%), Postives = 116/159 (72.96%), Query Frame = 2
Query:   50 KITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNT-LFDLILAANYLNIKGLLDLTCQTV-----ADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 508
            KI LKSSDG++FE++E VA +S  I HMVED CA  VIPL NVTS IL  VI+YC+KHV++           E+DLK WDADF+K  + T LFD+++AANYLNI+ LLDLTC+TV     AD++ GKTP+EIR  FNI+ND + +E  ++R ENQWAF+
Sbjct:    4 KIMLKSSDGKSFEIDEDVARKSIAINHMVEDGCATDVIPLRNVTSKILKIVIDYCEKHVKS---------KEEEDLKEWDADFMKTIETTILFDVMMAANYLNIQSLLDLTCKTVSDLLQADLLSGKTPDEIRAHFNIENDLTAEEVAKIREENQWAFQ 153          
BLAST of CN189170 vs. ExPASy Swiss-Prot
Match: ASK8_ARATH (SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK8 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.362e-41
Identity = 85/157 (54.14%), Postives = 114/157 (72.61%), Query Frame = 2
Query:   41 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKH-VEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 508
            S KKI LKSS+G+TFE+EE  A + QTI HM+E +C D VI +  +TS IL  VIEYC KH V+A +        ++DDL+ WD +F++ D++T+F L  AAN+LN K LL L  QTVADMIKG TP+++R+ FNI+ND +P+EE  +RREN+WAFE
Sbjct:    2 STKKIMLKSSEGKTFEIEEETARQCQTIAHMIEAECTDNVILVLKMTSEILEMVIEYCNKHHVDAAN------PCSDDDLEKWDKEFMEKDKSTIFALTNAANFLNNKSLLHLAGQTVADMIKGNTPKQMREFFNIENDLTPEEEAAIRRENKWAFE 152          
BLAST of CN189170 vs. ExPASy Swiss-Prot
Match: ASK17_ARATH (SKP1-like protein 17 OS=Arabidopsis thaliana GN=ASK17 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.394e-39
Identity = 81/156 (51.92%), Postives = 109/156 (69.87%), Query Frame = 2
Query:   41 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDADFVK-VDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAF 505
            S KKI L SSD E FE++E VA + Q + HM++DDCAD  I L NVT  IL+ +IEYCKKHV        DD   +++  TWDA+FVK +D +TLF L+ AA+YL + GL +L  Q +AD    KT  EIR+ FNI+ND++P+EEEE+R++N+WAF
Sbjct:    2 SSKKIVLTSSDDECFEIDEAVARKMQMVAHMIDDDCADKAIRLQNVTGKILAIIIEYCKKHV--------DDVEAKNEFVTWDAEFVKNIDMDTLFKLLDAADYLIVIGLKNLIAQAIADYTADKTVNEIRELFNIENDYTPEEEEELRKKNEWAF 149          
BLAST of CN189170 vs. ExPASy Swiss-Prot
Match: SKP1_SCHPO (Suppressor of kinetochore protein 1 OS=Schizosaccharomyces pombe GN=skp1 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.456e-38
Identity = 83/158 (52.53%), Postives = 116/158 (73.42%), Query Frame = 2
Query:   50 KITLKSSDGETFEVEETVALESQTIKHMVEDDCADTV-IPLPNVTSTILSKVIEYCKKH---VEAGSGDKKD---DKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWA 502
            KI L SSD E F V++ +A  S  IK+M+ED     V IPLPNV+S +L KV+E+C+ H   + +G+ ++ D    KST  D+  WD  F+ VDQ  LF+++LA+NYL+IK LLD  C+TVA+MI+GK+PE+IRKTFNI NDF+P+EEE++R+EN+WA
Sbjct:    3 KIKLISSDNEEFVVDQLIAERSMLIKNMLEDVGEINVPIPLPNVSSNVLRKVLEWCEHHKNDLYSGTEEESDIRLKKST--DIDEWDRKFMAVDQEMLFEIVLASNYLDIKPLLDTGCKTVANMIRGKSPEDIRKTFNIPNDFTPEEEEQIRKENEWA 158          
BLAST of CN189170 vs. ExPASy Swiss-Prot
Match: SKP1_YEAST (Suppressor of kinetochore protein 1 OS=Saccharomyces cerevisiae GN=SKP1 PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.563e-33
Identity = 75/186 (40.32%), Postives = 111/186 (59.68%), Query Frame = 2
Query:   53 ITLKSSDGETFEVEETVALESQTIKHMVED-----------------------------------DCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTED-DLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWA 502
            + L S +GE F V++ +A  S  +K+ + D                                   D  + V+P+PNV S++L KVIE+ + H ++   D+ DD S +   + +WD +F+KVDQ  L+++ILAANYLNIK LLD  C+ VA+MI+G++PEEIR+TFNI NDF+P+EE  +RREN+WA
Sbjct:    6 VVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKDNNNGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 191          
The following BLAST results are available for this feature:
BLAST of CN189170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SKP1_CAVPO6.504e-4557.86S-phase kinase-associated protein 1 OS=Cavia porce... [more]
SKP1_BOVIN6.504e-4557.86S-phase kinase-associated protein 1 OS=Bos taurus ... [more]
ASK16_ARATH1.449e-4453.61SKP1-like protein 16 OS=Arabidopsis thaliana GN=AS... [more]
ASK19_ARATH1.892e-4452.38SKP1-like protein 19 OS=Arabidopsis thaliana GN=AS... [more]
ASK18_ARATH9.391e-4456.41SKP1-like protein 18 OS=Arabidopsis thaliana GN=AS... [more]
ASK5_ARATH7.950e-4356.60SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK... [more]
ASK8_ARATH4.362e-4154.14SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK... [more]
ASK17_ARATH2.394e-3951.92SKP1-like protein 17 OS=Arabidopsis thaliana GN=AS... [more]
SKP1_SCHPO3.456e-3852.53Suppressor of kinetochore protein 1 OS=Schizosacch... [more]
SKP1_YEAST2.563e-3340.32Suppressor of kinetochore protein 1 OS=Saccharomyc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001G21_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001G21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189170 ID=CN189170; Name=CN189170; organism=Citrus sinensis; type=EST; length=682bp
GACGCTTTAGCGAAAACCGTAACTCTCAGAAACGATGTCGTCTGAGAAGA
AGATCACTCTGAAGAGTTCGGACGGTGAGACGTTCGAGGTGGAGGAGACG
GTGGCCCTCGAGTCGCAGACAATCAAGCACATGGTGGAGGACGACTGCGC
CGACACCGTAATCCCGCTGCCGAATGTGACGAGCACGATTCTCTCGAAGG
TTATCGAGTACTGCAAGAAGCACGTTGAGGCTGGGTCAGGGGACAAGAAG
GACGACAAGTCGACCGAGGATGATCTCAAGACCTGGGATGCAGACTTCGT
CAAGGTTGATCAGAATACCCTCTTTGACCTAATCTTGGCAGCCAATTACC
TGAACATTAAGGGTTTGCTGGACTTGACCTGCCAAACTGTTGCAGACATG
ATCAAGGGGAAGACTCCAGAGGAGATCCGCAAGACCTTCAACATCAAGAA
TGACTTCTCTCCCGATGAAGAAGAGGAGGTTCGGAGAGAGAACCAATGGG
CATTCGAGTGAAGGACTGAAGTGATGAAGGCTCGGTCATTAATATTTGTG
ATAGGAATGTCGTTATAATGATAGTGGTCTTTTAGTATGTTGCCAGTAGG
TGTCTAGTATTGAACATCAACATTTCCTTTTGTCGTGAACCTGTGAATGC
TGCTCGATATAAATGTCATTGAACCCTTGTCT
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