CN189169

Overview
NameCN189169
Unique NameCN189169
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length471
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2146 contig Csv1_Contig2146:253..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189169 vs. ExPASy Swiss-Prot
Match: SKP1_CHICK (S-phase kinase-associated protein 1 OS=Gallus gallus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 5.429e-28
Identity = 61/90 (67.78%), Postives = 72/90 (80.00%), Query Frame = -3
Query:  197 KDDKSTE---DDFKTWDAEFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEGIRKTFNIKKDFFPDEEEGVWRENQWAFE 457
            +DD++ E   DD   WD EF+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPE IRKTFNIK DF  +EE  V +ENQW  E
Sbjct:   73 EDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CN189169 vs. ExPASy Swiss-Prot
Match: SKP1_CAVPO (S-phase kinase-associated protein 1 OS=Cavia porcellus GN=SKP1 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 5.429e-28
Identity = 61/90 (67.78%), Postives = 72/90 (80.00%), Query Frame = -3
Query:  197 KDDKSTE---DDFKTWDAEFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEGIRKTFNIKKDFFPDEEEGVWRENQWAFE 457
            +DD++ E   DD   WD EF+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPE IRKTFNIK DF  +EE  V +ENQW  E
Sbjct:   73 EDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CN189169 vs. ExPASy Swiss-Prot
Match: SKP1_BOVIN (S-phase kinase-associated protein 1 OS=Bos taurus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 5.429e-28
Identity = 61/90 (67.78%), Postives = 72/90 (80.00%), Query Frame = -3
Query:  197 KDDKSTE---DDFKTWDAEFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEGIRKTFNIKKDFFPDEEEGVWRENQWAFE 457
            +DD++ E   DD   WD EF+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPE IRKTFNIK DF  +EE  V +ENQW  E
Sbjct:   73 EDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CN189169 vs. ExPASy Swiss-Prot
Match: ASK4_ARATH (SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.063e-27
Identity = 61/91 (67.03%), Postives = 70/91 (76.92%), Query Frame = -3
Query:  197 GDKKDDKSTE-DDFKTWDAEFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEGIRKTFNIKKDFFPDEEEGVWRENQWAFE 466
            GDK    S E D+ K WD+EFVKVDQ TLFDLILAANYLNI GLLDLTC+ VAD ++GKTPE +R  FNIK D+ P+EE  V  EN+WAFE
Sbjct:   73 GDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKAVADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163          
BLAST of CN189169 vs. ExPASy Swiss-Prot
Match: SKP1B_DICDI (SCF ubiquitin ligase complex protein SKP1b OS=Dictyostelium discoideum GN=fpaB-1 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.747e-26
Identity = 56/87 (64.37%), Postives = 69/87 (79.31%), Query Frame = -3
Query:  206 GDKKDDKSTEDDFKTWDAEFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEGIRKTFNIKKDFFPDEEEGVWRENQW 466
            GD K D+   DD   +D +F KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MI+GKTPE IRK FNIK DF P+EEE + +EN+W
Sbjct:   69 GDDKKDEKRLDDIPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155          
BLAST of CN189169 vs. ExPASy Swiss-Prot
Match: SKP1A_DICDI (SCF ubiquitin ligase complex protein SKP1a OS=Dictyostelium discoideum GN=fpaA PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.747e-26
Identity = 56/87 (64.37%), Postives = 69/87 (79.31%), Query Frame = -3
Query:  206 GDKKDDKSTEDDFKTWDAEFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEGIRKTFNIKKDFFPDEEEGVWRENQW 466
            GD K D+   DD   +D +F KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MI+GKTPE IRK FNIK DF P+EEE + +EN+W
Sbjct:   69 GDDKKDEKRLDDIPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155          
BLAST of CN189169 vs. ExPASy Swiss-Prot
Match: ASK3_ARATH (SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.479e-25
Identity = 57/91 (62.64%), Postives = 69/91 (75.82%), Query Frame = -3
Query:  197 GDKKDDKSTED-DFKTWDAEFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEGIRKTFNIKKDFFPDEEEGVWRENQWAFE 466
            GDK    STE+ + KTWD +FVKVD  TLFDL+ AANYLNI GLLDLTC+ VAD ++GKTP  +R+ FNIK D+ P+EE  V  EN+WAFE
Sbjct:   73 GDKDFYGSTENHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKAVADQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163          
BLAST of CN189169 vs. ExPASy Swiss-Prot
Match: ASK14_ARATH (SKP1-like protein 14 OS=Arabidopsis thaliana GN=ASK14 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.294e-25
Identity = 56/81 (69.14%), Postives = 65/81 (80.25%), Query Frame = -3
Query:  197 DDFKTWDAEFVK-VDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEGIRKTFNIKKDFFPDEEEGVWRENQWAFE 436
            D+FKTWD EF+K  DQ T+F L+LAANYLNIKGLLDL+ QTVAD IK KTPE IR+ FNI+ DF P+EE  V +EN WAFE
Sbjct:   69 DEFKTWDEEFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTVADRIKDKTPEEIREIFNIENDFTPEEEAAVRKENAWAFE 149          
BLAST of CN189169 vs. ExPASy Swiss-Prot
Match: ASK9_ARATH (SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK9 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 7.338e-25
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = -3
Query:  197 TEDDFKTWDAEFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEGIRKTFNIKKDFFPDEEEGVWRENQWAFE 442
            ++DD K WD EF++ D +T+FDLI AANYLNIK L DL CQTVA++IKG TPE IR+ FNI+ D  P+EE  + REN+WAFE
Sbjct:   72 SDDDLKKWDKEFMEKDTSTIFDLIKAANYLNIKSLFDLACQTVAEIIKGNTPEQIREFFNIENDLTPEEEAAIRRENKWAFE 153          
BLAST of CN189169 vs. ExPASy Swiss-Prot
Match: ASK10_ARATH (SKP1-like protein 10 OS=Arabidopsis thaliana GN=ASK10 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 4.756e-24
Identity = 52/82 (63.41%), Postives = 63/82 (76.83%), Query Frame = -3
Query:  197 TEDDFKTWDAEFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEGIRKTFNIKKDFFPDEEEGVWRENQWAFE 442
            +++D K WD EF++  Q+T+FDLI+AANYLNIK LLDL CQTVADMIK  T E  RK FNI+ D+  +EEE V RENQW FE
Sbjct:   71 SDEDLKKWDKEFMEKYQSTIFDLIMAANYLNIKSLLDLACQTVADMIKDNTVEHTRKFFNIENDYTHEEEEAVRRENQWGFE 152          
The following BLAST results are available for this feature:
BLAST of CN189169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
SKP1_CHICK5.429e-2867.78S-phase kinase-associated protein 1 OS=Gallus gall... [more]
SKP1_CAVPO5.429e-2867.78S-phase kinase-associated protein 1 OS=Cavia porce... [more]
SKP1_BOVIN5.429e-2867.78S-phase kinase-associated protein 1 OS=Bos taurus ... [more]
ASK4_ARATH2.063e-2767.03SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK... [more]
SKP1B_DICDI1.747e-2664.37SCF ubiquitin ligase complex protein SKP1b OS=Dict... [more]
SKP1A_DICDI1.747e-2664.37SCF ubiquitin ligase complex protein SKP1a OS=Dict... [more]
ASK3_ARATH1.479e-2562.64SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK... [more]
ASK14_ARATH3.294e-2569.14SKP1-like protein 14 OS=Arabidopsis thaliana GN=AS... [more]
ASK9_ARATH7.338e-2562.20SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK... [more]
ASK10_ARATH4.756e-2463.41SKP1-like protein 10 OS=Arabidopsis thaliana GN=AS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001G21_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001G21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189169 ID=CN189169; Name=CN189169; organism=Citrus sinensis; type=EST; length=471bp
TTTTTTTTTTTTTTTTTCCCTTAAACAAGGGTTCAATGACATTTATATCG
AGCAGCATTCCCAGGTTCACAACAAAAGGAAATGTTGATGTTCAATACTA
AACCCCTACGGGCAACATACTAAAAAACCCCTATCTTTATAACGACTTTC
CTATCACAAATATTAATGACCGAGCCTTCATCACTTCAGTCCTTCACTCA
AAGGCCCATTGGTTCTCTCTCCAAACCCCCTCTTCTTCATCGGGAAAAAA
GTCTTTCTTGATGTTGAAGGTCTTGCGAATCCCCTCTGGAGTCTTCCCCT
TGATCATGTCTGCAACAGTTTGGCAGGTCAAGTCCAGCAAACCCTTAATG
TTCAGGTAATTGGCTGCCAAAATTAGGTCAAAAAGGGTATTCTGATCAAC
CTTGACAAATTCTGCATCCCAGGTCTTGAAATCATCCTCGGTCGACTTGT
CGTCCTTCTTGTCCCCTGACC
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