CN189169

Overview
NameCN189169
Unique NameCN189169
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length471
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2146 contig Csv1_Contig2146:253..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189169 vs. ExPASy Swiss-Prot
Match: ASK15_ARATH (SKP1-like protein 15 OS=Arabidopsis thaliana GN=ASK15 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.807e-23
Identity = 53/90 (58.89%), Postives = 66/90 (73.33%), Query Frame = -3
Query:  197 KKDDKSTEDDFKTWDAEFVK-VDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEGIRKTFNIKKDF-FPDEEEGVWRENQWAFE 460
            KK D   + +   WDAEF+K +D  T+F LILAANYLN++GLL LTCQTVAD IK KTPE +R+ FNI+ DF   +EEE + +EN WAFE
Sbjct:   78 KKPDDEAKQNLDAWDAEFMKNIDMETIFKLILAANYLNVEGLLGLTCQTVADYIKDKTPEEVRELFNIENDFTHEEEEEAIRKENAWAFE 167          
BLAST of CN189169 vs. ExPASy Swiss-Prot
Match: ASK13_ARATH (SKP1-like protein 13 OS=Arabidopsis thaliana GN=ASK13 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.807e-23
Identity = 52/86 (60.47%), Postives = 65/86 (75.58%), Query Frame = -3
Query:  197 KSTEDDFKTWDAEFVKV--DQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEGIRKTFNIKKDFFPDEEEGVWRENQWAFE 448
            + ++D+ K WDAEF+K     +TLFD++LAANYLNIK LLDL CQTVADMI GK P+ IR    I+ DF P+EEE + +ENQWAFE
Sbjct:   69 EESKDELKKWDAEFMKALEQSSTLFDVMLAANYLNIKDLLDLGCQTVADMITGKKPDEIRALLGIENDFTPEEEEEIRKENQWAFE 154          
BLAST of CN189169 vs. ExPASy Swiss-Prot
Match: SKP1_YEAST (Suppressor of kinetochore protein 1 OS=Saccharomyces cerevisiae GN=SKP1 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 8.970e-23
Identity = 50/88 (56.82%), Postives = 66/88 (75.00%), Query Frame = -3
Query:  203 DKKDDKSTED-DFKTWDAEFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEGIRKTFNIKKDFFPDEEEGVWRENQWA 463
            D+ DD S +     +WD EF+KVDQ  L+++ILAANYLNIK LLD  C+ VA+MI+G++PE IR+TFNI  DF P+EE  + REN+WA
Sbjct:  104 DEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 191          
BLAST of CN189169 vs. ExPASy Swiss-Prot
Match: SKP1_SCHPO (Suppressor of kinetochore protein 1 OS=Schizosaccharomyces pombe GN=skp1 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.409e-22
Identity = 49/82 (59.76%), Postives = 65/82 (79.27%), Query Frame = -3
Query:  203 KSTEDDFKTWDAEFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEGIRKTFNIKKDFFPDEEEGVWRENQWA 448
            KST+ D   WD +F+ VDQ  LF+++LA+NYL+IK LLD  C+TVA+MI+GK+PE IRKTFNI  DF P+EEE + +EN+WA
Sbjct:   79 KSTDID--EWDRKFMAVDQEMLFEIVLASNYLDIKPLLDTGCKTVANMIRGKSPEDIRKTFNIPNDFTPEEEEQIRKENEWA 158          
BLAST of CN189169 vs. ExPASy Swiss-Prot
Match: ASK19_ARATH (SKP1-like protein 19 OS=Arabidopsis thaliana GN=ASK19 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.432e-20
Identity = 47/90 (52.22%), Postives = 64/90 (71.11%), Query Frame = -3
Query:  197 DKKDDKSTEDDFKTWDAEFVK-VDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEGIRKTFNIKKDFFPDEEEGVWRENQWAFE 463
            D+ +DK  ++    WDA+F+K  D  T+FD+ILAANYLN++GL DL  +T+AD IK  TPE +R+ FNI+ DF P+EEE +  EN W FE
Sbjct:  103 DEAEDK--KEKLNEWDAKFMKDFDIKTIFDIILAANYLNVQGLFDLCSKTIADYIKDMTPEEVRELFNIENDFTPEEEEAIRNENAWTFE 190          
BLAST of CN189169 vs. ExPASy Swiss-Prot
Match: ASK16_ARATH (SKP1-like protein 16 OS=Arabidopsis thaliana GN=ASK16 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.432e-20
Identity = 44/86 (51.16%), Postives = 64/86 (74.42%), Query Frame = -3
Query:  197 DKSTEDDFKTWDAEFVK-VDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEGIRKTFNIKKDFFPDEEEGVWRENQWAFE 451
            ++  +++ +TWDAEF+K  D  T+  LILA NYLN++ LL LTCQTVAD +K  +PE +R+ FNI+ D+ P+EE+ + +EN WAFE
Sbjct:   82 NEEAKNELRTWDAEFMKEFDMETVMKLILAVNYLNVQDLLGLTCQTVADHMKDMSPEEVRELFNIENDYTPEEEDAIRKENAWAFE 167          
BLAST of CN189169 vs. ExPASy Swiss-Prot
Match: ASK18_ARATH (SKP1-like protein 18 OS=Arabidopsis thaliana GN=ASK18 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 2.443e-20
Identity = 45/89 (50.56%), Postives = 64/89 (71.91%), Query Frame = -3
Query:  200 DKKDDKSTEDDFKTWDAEFV-KVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEGIRKTFNIKKDFFPDEEEGVWRENQWAF 463
            ++ +D+  + +  +WDA+F+ K+D  T+F +ILAANYLN +GLL    QTVAD IK KTPE +R+ FNI+ DF P+EEE + +EN W F
Sbjct:   68 EEDEDEEAKKNLDSWDAKFMEKLDLETIFKIILAANYLNFEGLLGFASQTVADYIKDKTPEEVREIFNIENDFTPEEEEEIRKENAWTF 156          
BLAST of CN189169 vs. ExPASy Swiss-Prot
Match: ASK8_ARATH (SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK8 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.167e-20
Identity = 45/82 (54.88%), Postives = 61/82 (74.39%), Query Frame = -3
Query:  197 TEDDFKTWDAEFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEGIRKTFNIKKDFFPDEEEGVWRENQWAFE 442
            ++DD + WD EF++ D++T+F L  AAN+LN K LL L  QTVADMIKG TP+ +R+ FNI+ D  P+EE  + REN+WAFE
Sbjct:   71 SDDDLEKWDKEFMEKDKSTIFALTNAANFLNNKSLLHLAGQTVADMIKGNTPKQMREFFNIENDLTPEEEAAIRRENKWAFE 152          
BLAST of CN189169 vs. ExPASy Swiss-Prot
Match: ASK5_ARATH (SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK5 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.607e-19
Identity = 47/95 (49.47%), Postives = 64/95 (67.37%), Query Frame = -3
Query:  197 DKKDDKSTEDDFKTWDAEFVKVDQNT-LFDLILAANYLNIKGLLDLTCQTV-----ADMIKGKTPEGIRKTFNIKKDFFPDEEEGVWRENQWAFE 463
            +K      E+D K WDA+F+K  + T LFD+++AANYLNI+ LLDLTC+TV     AD++ GKTP+ IR  FNI+ D   +E   +  ENQWAF+
Sbjct:   59 EKHVKSKEEEDLKEWDADFMKTIETTILFDVMMAANYLNIQSLLDLTCKTVSDLLQADLLSGKTPDEIRAHFNIENDLTAEEVAKIREENQWAFQ 153          
BLAST of CN189169 vs. ExPASy Swiss-Prot
Match: ASK17_ARATH (SKP1-like protein 17 OS=Arabidopsis thaliana GN=ASK17 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.355e-17
Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = -3
Query:  200 DDKSTEDDFKTWDAEFVK-VDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEGIRKTFNIKKDFFPDEEEGVWRENQWAF 454
            DD   +++F TWDAEFVK +D +TLF L+ AA+YL + GL +L  Q +AD    KT   IR+ FNI+ D+ P+EEE + ++N+WAF
Sbjct:   64 DDVEAKNEFVTWDAEFVKNIDMDTLFKLLDAADYLIVIGLKNLIAQAIADYTADKTVNEIRELFNIENDYTPEEEEELRKKNEWAF 149          
The following BLAST results are available for this feature:
BLAST of CN189169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
ASK15_ARATH1.807e-2358.89SKP1-like protein 15 OS=Arabidopsis thaliana GN=AS... [more]
ASK13_ARATH1.807e-2360.47SKP1-like protein 13 OS=Arabidopsis thaliana GN=AS... [more]
SKP1_YEAST8.970e-2356.82Suppressor of kinetochore protein 1 OS=Saccharomyc... [more]
SKP1_SCHPO3.409e-2259.76Suppressor of kinetochore protein 1 OS=Schizosacch... [more]
ASK19_ARATH1.432e-2052.22SKP1-like protein 19 OS=Arabidopsis thaliana GN=AS... [more]
ASK16_ARATH1.432e-2051.16SKP1-like protein 16 OS=Arabidopsis thaliana GN=AS... [more]
ASK18_ARATH2.443e-2050.56SKP1-like protein 18 OS=Arabidopsis thaliana GN=AS... [more]
ASK8_ARATH4.167e-2054.88SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK... [more]
ASK5_ARATH4.607e-1949.47SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK... [more]
ASK17_ARATH7.355e-1748.84SKP1-like protein 17 OS=Arabidopsis thaliana GN=AS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001G21_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001G21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189169 ID=CN189169; Name=CN189169; organism=Citrus sinensis; type=EST; length=471bp
TTTTTTTTTTTTTTTTTCCCTTAAACAAGGGTTCAATGACATTTATATCG
AGCAGCATTCCCAGGTTCACAACAAAAGGAAATGTTGATGTTCAATACTA
AACCCCTACGGGCAACATACTAAAAAACCCCTATCTTTATAACGACTTTC
CTATCACAAATATTAATGACCGAGCCTTCATCACTTCAGTCCTTCACTCA
AAGGCCCATTGGTTCTCTCTCCAAACCCCCTCTTCTTCATCGGGAAAAAA
GTCTTTCTTGATGTTGAAGGTCTTGCGAATCCCCTCTGGAGTCTTCCCCT
TGATCATGTCTGCAACAGTTTGGCAGGTCAAGTCCAGCAAACCCTTAATG
TTCAGGTAATTGGCTGCCAAAATTAGGTCAAAAAGGGTATTCTGATCAAC
CTTGACAAATTCTGCATCCCAGGTCTTGAAATCATCCTCGGTCGACTTGT
CGTCCTTCTTGTCCCCTGACC
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