CN189160

Overview
NameCN189160
Unique NameCN189160
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_AGRT5 (Nucleoside diphosphate kinase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=ndk PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.082e-25
Identity = 60/133 (45.11%), Postives = 78/133 (58.65%), Query Frame = -3
Query:  263 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 661
            TF MIKPD  +R L G I   FE  G  +   K + + +  AE  Y     +PFFG L+E +TSGP +  + EGE  +   R I+GATNPAQ A GTIR   A+  G N +HGSD+ E+A +EIA WF +  I
Sbjct:    6 TFSMIKPDATKRNLTGAITKVFEDNGLRIVASKRVWMSKREAEGFYAVHKERPFFGELVEGMTSGPTIVQVLEGENAILKNREIMGATNPAQAAEGTIRKSFALSIGENSVHGSDAPETAAQEIAYWFAETEI 138          
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_SALAR (Nucleoside diphosphate kinase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=ndk PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.414e-25
Identity = 57/133 (42.86%), Postives = 82/133 (61.65%), Query Frame = -3
Query:  263 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 661
            TF +IKP+ V + ++G I  RFE  GF + G +++ +    A   Y +   KPFF  L+E++TSGP+V  + E E  V+  R ++GATNPA    GT+R D A     N  HGSDS+ESAQ+EIA +F +G +
Sbjct:    6 TFSIIKPNAVAKNVIGSIFARFEAAGFRIVGTRMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANALAGTLRADYADSFTENGTHGSDSLESAQREIAFFFGEGEV 138          
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_PROMH (Nucleoside diphosphate kinase OS=Proteus mirabilis (strain HI4320) GN=ndk PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.414e-25
Identity = 56/133 (42.11%), Postives = 83/133 (62.41%), Query Frame = -3
Query:  263 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 661
            TF +IKP+ V++ ++G I  RFE  GFS+   K++ + R  AE  YE+   +PFF  L+E++TSGP++  + EGE  ++  R ++GATNP     GT+R D A     N +HGSDS  SA +EIA +F +  I
Sbjct:    6 TFSIIKPNAVKKNVIGAIYNRFESAGFSIVAAKMLHLTREQAEGFYEEHKGRPFFDGLVEFMTSGPIMVQVLEGENAIQRHRDLMGATNPDNALAGTLRADYADSFTENAVHGSDSEASAAREIAYFFTENEI 138          
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_CAMHC (Nucleoside diphosphate kinase OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=ndk PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.414e-25
Identity = 57/128 (44.53%), Postives = 81/128 (63.28%), Query Frame = -3
Query:  278 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 661
            T  +IKPD V++G++G+II RFE  G  +   K + + +  A + Y     + FF  L++Y+TSGPVV M+ EGE  V   R ++GAT+P + APGTIR D A     N +HGSDS E+A+ EIA +F
Sbjct:    4 TLSIIKPDAVEKGVIGKIIDRFESAGLRIAAAKKIKLSKCDASQFYAIHKERSFFNDLVDYMTSGPVVVMVLEGENAVAKNRELMGATDPKKAAPGTIRADFAESIDANAVHGSDSEENAKNEIAFFF 131          
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_ANAMM (Nucleoside diphosphate kinase OS=Anaplasma marginale (strain St. Maries) GN=ndk PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.414e-25
Identity = 57/133 (42.86%), Postives = 84/133 (63.16%), Query Frame = -3
Query:  263 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 661
            T  ++KPD V+RG++G ++   E  G  +   ++  +    AE  Y    ++PFF SL+ ++TSGPVV  +  GE  VKT R ++GATNP++ APGTIRGDLA     N +HGSDS+E+A+ EI  +F +  I
Sbjct:    6 TLSILKPDVVERGIIGRVLSYIEAAGLRIVAQRMCALSHEQAEAFYAVHKARPFFPSLVGFMTSGPVVVQVLVGESAVKTYRDVMGATNPSEAAPGTIRGDLAESIDANCVHGSDSLENAEWEIKFFFKEHEI 138          
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_ANAMF (Nucleoside diphosphate kinase OS=Anaplasma marginale (strain Florida) GN=ndk PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.414e-25
Identity = 57/133 (42.86%), Postives = 84/133 (63.16%), Query Frame = -3
Query:  263 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 661
            T  ++KPD V+RG++G ++   E  G  +   ++  +    AE  Y    ++PFF SL+ ++TSGPVV  +  GE  VKT R ++GATNP++ APGTIRGDLA     N +HGSDS+E+A+ EI  +F +  I
Sbjct:    6 TLSILKPDVVERGIIGRVLSYIEAAGLRIVAQRMCALSHEQAEAFYAVHKARPFFPSLVGFMTSGPVVVQVLVGESAVKTYRDVMGATNPSEAAPGTIRGDLAESIDANCVHGSDSLENAEWEIKFFFKEHEI 138          
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_VIBHB (Nucleoside diphosphate kinase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.846e-25
Identity = 57/133 (42.86%), Postives = 81/133 (60.90%), Query Frame = -3
Query:  263 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 661
            TF ++KPD V+R L+GEI  R EK G  +   K++ +    A   Y +   KPFF +L E++TSGP++  + EGE  +   R ++G TNP + A GTIR D A+    N +HGSDS ESA +EI  +FP+  I
Sbjct:    6 TFSIVKPDAVERNLIGEIYHRIEKAGLRIVAAKMVHLTEEQASGFYAEHEGKPFFPALKEFMTSGPIMVQVLEGEDAIARYRELMGKTNPEEAACGTIRADYALSMRHNSVHGSDSPESAAREIEFFFPESEI 138          
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_SHEPA (Nucleoside diphosphate kinase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.846e-25
Identity = 58/128 (45.31%), Postives = 80/128 (62.50%), Query Frame = -3
Query:  278 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 661
            TF +IKPD V +  +G I  RFE  G  +   K++ + +  AE  Y + S +PFFG+L+ ++TSGP++    EGE  V   R I+GATNPA+ A GTIR D A     N  HGSDSV SA++E+A +F
Sbjct:    6 TFSIIKPDAVAKNHIGAIYNRFETAGLKIIASKMIHLSKEQAEGFYAEHSERPFFGALVAFMTSGPIMVQTLEGENAVLAHREILGATNPAEAAEGTIRADFAESIDENAAHGSDSVASAEREVAYFF 133          
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_SHEHH (Nucleoside diphosphate kinase OS=Shewanella halifaxensis (strain HAW-EB4) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.846e-25
Identity = 59/128 (46.09%), Postives = 80/128 (62.50%), Query Frame = -3
Query:  278 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 661
            TF +IKPD V +  +G I  RFE  G  +   K++ + +  AE  Y + S +PFFG+L+ ++TSGP++    EGE  V   R I+GATNPA+ A GTIR D A     N  HGSDSV SA++EIA +F
Sbjct:    6 TFSIIKPDAVAKNHIGAIYNRFETAGLKIIASKMVHLSQEQAEGFYAEHSERPFFGALVAFMTSGPIMVQTLEGENAVLAHREILGATNPAEAAEGTIRADFAESIDENAAHGSDSVASAEREIAYFF 133          
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_SERP5 (Nucleoside diphosphate kinase OS=Serratia proteamaculans (strain 568) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.846e-25
Identity = 58/133 (43.61%), Postives = 81/133 (60.90%), Query Frame = -3
Query:  263 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 661
            TF +IKP+ V    +G I  RFE+ GF +   K++ + R  AE  Y +   +PFF  L+E++TSGP+V  + E E  V+  R I+GATNP     GT+R D A     N +HGSD+VESAQ+EIA +F +  I
Sbjct:    6 TFSIIKPNAVANNDIGAIYARFERAGFKIIASKMLRLTREQAEGFYAEHKGRPFFDGLVEFMTSGPIVVQVLEAENAVQRNRDIMGATNPDNALAGTLRADYADSFTANAVHGSDAVESAQREIAYFFNESEI 138          
The following BLAST results are available for this feature:
BLAST of CN189160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_AGRT51.082e-2545.11Nucleoside diphosphate kinase OS=Agrobacterium tum... [more]
NDK_SALAR1.414e-2542.86Nucleoside diphosphate kinase OS=Salmonella arizon... [more]
NDK_PROMH1.414e-2542.11Nucleoside diphosphate kinase OS=Proteus mirabilis... [more]
NDK_CAMHC1.414e-2544.53Nucleoside diphosphate kinase OS=Campylobacter hom... [more]
NDK_ANAMM1.414e-2542.86Nucleoside diphosphate kinase OS=Anaplasma margina... [more]
NDK_ANAMF1.414e-2542.86Nucleoside diphosphate kinase OS=Anaplasma margina... [more]
NDK_VIBHB1.846e-2542.86Nucleoside diphosphate kinase OS=Vibrio harveyi (s... [more]
NDK_SHEPA1.846e-2545.31Nucleoside diphosphate kinase OS=Shewanella pealea... [more]
NDK_SHEHH1.846e-2546.09Nucleoside diphosphate kinase OS=Shewanella halifa... [more]
NDK_SERP51.846e-2543.61Nucleoside diphosphate kinase OS=Serratia proteama... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001G16_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001G16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189160 ID=CN189160; Name=CN189160; organism=Citrus sinensis; type=EST; length=663bp
TTTTTTTTTTTTTTTTTCATAATACAGTCAACAAAAAAGCTTAAATATTG
TATATGGCAACCACAAAAATAAAAGCAGCCAACATAACCAGGATTGGTCT
CAATTTAACTCAATACTTCATAACAGTTCACCAACAAGGAGTAACCATAA
ATAAGGAAATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGAACAATT
AGGCTCCTCAACCAAACATTAGTTTACTCATAAATCCAAGGGTGAAGGCT
GCTCTGCCAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTTCTTTCT
GGGCACTCTCAACTGAGTCACTTCCATGGATAATATTCCTGCCCGTCACG
ATAGCCAAATCACCACGGATGGTTCCAGGAGCAAACTGCGCAGGGTTGGT
GGCTCCAATAATAGTGCGGCCAGTCTTAACAACACCTTCACCCTCCCAAA
TCATAGCAACAACAGGACCAGAGGTAATGTACTCAATCAAAGAACCAAAG
AAAGGCTTCGATGACAAATCCTCATAGTGCTTCTCAGCAAAAGGGCGGTC
CACAGTCATAAGCTTCAAACCCTTCAAAGAAAAACCCTTCTTCTCAAATC
TGATGATGATTTCACCAACAAGGCCTCTTTGGACCCCATCGGGCTTGATC
ATGATGAAAGTTT
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