CN189160

Overview
NameCN189160
Unique NameCN189160
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_PSEFS (Nucleoside diphosphate kinase OS=Pseudomonas fluorescens (strain SBW25) GN=ndk PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.164e-25
Identity = 56/128 (43.75%), Postives = 79/128 (61.72%), Query Frame = -3 
Query:  278 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 661
            TF +IKPD V + ++GEI  RFEK G  +   KL  + +  AE  Y + S++ FFG L+ ++ SGPVV  + EGE  +   R ++GATNP + A GTIR D A     N +HGSDS  +A +EI+ +F
Sbjct:    6 TFSIIKPDAVAKNVIGEITTRFEKAGLKVVASKLKQLSKAEAEGFYAEHSARGFFGDLVAFMISGPVVVQVLEGENAIALNRELMGATNPKEAAAGTIRADFAESIDANAVHGSDSEAAAAREISYFF 133
[Close]
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_HAHCH (Nucleoside diphosphate kinase OS=Hahella chejuensis (strain KCTC 2396) GN=ndk PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.164e-25
Identity = 55/133 (41.35%), Postives = 79/133 (59.40%), Query Frame = -3 
Query:  263 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 661
            T  +IKPD V + ++GEI  RFEK G  +   K++ + +  AE  Y +   + FF  L+ ++TSGPVV    EGE  +   R ++GATNP +  PGTIR D A     N +HGSDS  SA++E+A +F +  I
Sbjct:    6 TLSIIKPDAVAKNVIGEIYSRFEKAGLRIVAAKMLHLSQEQAEGFYAEHKERGFFPDLVAFMTSGPVVVQALEGENAIALNRQLMGATNPKEAEPGTIRADFASSIDANAVHGSDSAASAEREVAYFFSENEI 138
[Close]
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_CAMJR (Nucleoside diphosphate kinase OS=Campylobacter jejuni (strain RM1221) GN=ndk PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.164e-25
Identity = 56/133 (42.11%), Postives = 81/133 (60.90%), Query Frame = -3 
Query:  263 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 661
            T  +IKPD V++G++G+I+ RFE  G  +  +K + + +  AE  Y     +PFF  L+E++ SGPVV  + EGEG V   R ++GATNP +   GTIR D A     N +HGSDS+E+A+ EI  +F    I
Sbjct:    4 TLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQAENFYAVHKERPFFKDLVEFMISGPVVVSVLEGEGAVLKNRDLMGATNPKEAKAGTIRADFAESIDANAVHGSDSLENAKIEIDFFFKPNEI 136
[Close]
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_CAMJ8 (Nucleoside diphosphate kinase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=ndk PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.164e-25
Identity = 56/133 (42.11%), Postives = 81/133 (60.90%), Query Frame = -3 
Query:  263 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 661
            T  +IKPD V++G++G+I+ RFE  G  +  +K + + +  AE  Y     +PFF  L+E++ SGPVV  + EGEG V   R ++GATNP +   GTIR D A     N +HGSDS+E+A+ EI  +F    I
Sbjct:    4 TLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQAENFYAVHKERPFFKDLVEFMISGPVVVSVLEGEGAVLKNRDLMGATNPKEAKAGTIRADFAESIDANAVHGSDSLENAKIEIDFFFKPNEI 136
[Close]
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_CAMC1 (Nucleoside diphosphate kinase OS=Campylobacter concisus (strain 13826) GN=ndk PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.164e-25
Identity = 56/128 (43.75%), Postives = 79/128 (61.72%), Query Frame = -3 
Query:  278 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 661
            T  +IKPD V++ +VG+II RFE  G  +   K + + +  A+  Y     +PFF  L++++ SGPVV M+ EGE  V   R ++GATNP + APGTIR D A     N +HGSDS+E+A  EI  +F
Sbjct:    4 TLSIIKPDAVKKNVVGKIIDRFESNGLRIAAAKKIKLSKCDAKAFYAVHKDRPFFNDLVDFMVSGPVVVMVLEGENAVAKNRELMGATNPKEAAPGTIRADFADSIDANAVHGSDSLENAVNEINFFF 131
[Close]
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_BORPE (Nucleoside diphosphate kinase OS=Bordetella pertussis GN=ndk PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.164e-25
Identity = 52/130 (40.00%), Postives = 81/130 (62.31%), Query Frame = -3 
Query:  272 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 661
            T  +IKPD V + +VG+I+ RFE+ G  +   ++  + R  AE+ Y     +PFF  L++++ SGPV   + EGE  ++  R ++GAT+P + APGTIR D A     N +HGSD+ E+A  E+A +FP+
Sbjct:    6 TLSIIKPDAVAKNVVGQIVARFEQAGLKVIAARMQQLSRTDAERFYAVHKERPFFKDLVDFMVSGPVFVQVLEGESAIQKNRDLMGATDPKKAAPGTIRADFADSIDANAVHGSDAPETAAVEVAFFFPE 135
[Close]
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_BORPA (Nucleoside diphosphate kinase OS=Bordetella parapertussis GN=ndk PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.164e-25
Identity = 52/130 (40.00%), Postives = 81/130 (62.31%), Query Frame = -3 
Query:  272 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 661
            T  +IKPD V + +VG+I+ RFE+ G  +   ++  + R  AE+ Y     +PFF  L++++ SGPV   + EGE  ++  R ++GAT+P + APGTIR D A     N +HGSD+ E+A  E+A +FP+
Sbjct:    6 TLSIIKPDAVAKNVVGQIVARFEQAGLKVIAARMQQLSRTDAERFYAVHKERPFFKDLVDFMVSGPVFVQVLEGESAIQKNRDLMGATDPKKAAPGTIRADFADSIDANAVHGSDAPETAAVEVAFFFPE 135
[Close]
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_BORBR (Nucleoside diphosphate kinase OS=Bordetella bronchiseptica GN=ndk PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.164e-25
Identity = 52/130 (40.00%), Postives = 81/130 (62.31%), Query Frame = -3 
Query:  272 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 661
            T  +IKPD V + +VG+I+ RFE+ G  +   ++  + R  AE+ Y     +PFF  L++++ SGPV   + EGE  ++  R ++GAT+P + APGTIR D A     N +HGSD+ E+A  E+A +FP+
Sbjct:    6 TLSIIKPDAVAKNVVGQIVARFEQAGLKVIAARMQQLSRTDAERFYAVHKERPFFKDLVDFMVSGPVFVQVLEGESAIQKNRDLMGATDPKKAAPGTIRADFADSIDANAVHGSDAPETAAVEVAFFFPE 135
[Close]
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_YERPP (Nucleoside diphosphate kinase OS=Yersinia pestis (strain Pestoides F) GN=ndk PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.197e-24
Identity = 55/128 (42.97%), Postives = 80/128 (62.50%), Query Frame = -3 
Query:  278 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 661
            TF +IKP+ V    +G I  RFE+ GF +   K++ + +  AE  Y +   +PFF  L+E++TSGP++  + EGE  V+  R I+GATNP     GT+R D +     N +HGSD+VESAQ+EIA +F
Sbjct:    6 TFSIIKPNAVANNDIGAIYARFERAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIMVQVLEGENAVQRHRDIMGATNPDNALAGTLRADFSDSFTANAVHGSDAVESAQREIAYFF 133
[Close]
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_YERPN (Nucleoside diphosphate kinase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=ndk PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.197e-24
Identity = 55/128 (42.97%), Postives = 80/128 (62.50%), Query Frame = -3 
Query:  278 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 661
            TF +IKP+ V    +G I  RFE+ GF +   K++ + +  AE  Y +   +PFF  L+E++TSGP++  + EGE  V+  R I+GATNP     GT+R D +     N +HGSD+VESAQ+EIA +F
Sbjct:    6 TFSIIKPNAVANNDIGAIYARFERAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIMVQVLEGENAVQRHRDIMGATNPDNALAGTLRADFSDSFTANAVHGSDAVESAQREIAYFF 133
The following BLAST results are available for this feature:
BLAST of CN189160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_PSEFS9.164e-2543.75Nucleoside diphosphate kinase OS=Pseudomonas fluor... [more]
NDK_HAHCH9.164e-2541.35Nucleoside diphosphate kinase OS=Hahella chejuensi... [more]
NDK_CAMJR9.164e-2542.11Nucleoside diphosphate kinase OS=Campylobacter jej... [more]
NDK_CAMJ89.164e-2542.11Nucleoside diphosphate kinase OS=Campylobacter jej... [more]
NDK_CAMC19.164e-2543.75Nucleoside diphosphate kinase OS=Campylobacter con... [more]
NDK_BORPE9.164e-2540.00Nucleoside diphosphate kinase OS=Bordetella pertus... [more]
NDK_BORPA9.164e-2540.00Nucleoside diphosphate kinase OS=Bordetella parape... [more]
NDK_BORBR9.164e-2540.00Nucleoside diphosphate kinase OS=Bordetella bronch... [more]
NDK_YERPP1.197e-2442.97Nucleoside diphosphate kinase OS=Yersinia pestis (... [more]
NDK_YERPN1.197e-2442.97Nucleoside diphosphate kinase OS=Yersinia pestis b... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001G16_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001G16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189160 ID=CN189160; Name=CN189160; organism=Citrus sinensis; type=EST; length=663bp
TTTTTTTTTTTTTTTTTCATAATACAGTCAACAAAAAAGCTTAAATATTG
TATATGGCAACCACAAAAATAAAAGCAGCCAACATAACCAGGATTGGTCT
CAATTTAACTCAATACTTCATAACAGTTCACCAACAAGGAGTAACCATAA
ATAAGGAAATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGAACAATT
AGGCTCCTCAACCAAACATTAGTTTACTCATAAATCCAAGGGTGAAGGCT
GCTCTGCCAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTTCTTTCT
GGGCACTCTCAACTGAGTCACTTCCATGGATAATATTCCTGCCCGTCACG
ATAGCCAAATCACCACGGATGGTTCCAGGAGCAAACTGCGCAGGGTTGGT
GGCTCCAATAATAGTGCGGCCAGTCTTAACAACACCTTCACCCTCCCAAA
TCATAGCAACAACAGGACCAGAGGTAATGTACTCAATCAAAGAACCAAAG
AAAGGCTTCGATGACAAATCCTCATAGTGCTTCTCAGCAAAAGGGCGGTC
CACAGTCATAAGCTTCAAACCCTTCAAAGAAAAACCCTTCTTCTCAAATC
TGATGATGATTTCACCAACAAGGCCTCTTTGGACCCCATCGGGCTTGATC
ATGATGAAAGTTT
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