CN189160

Overview
NameCN189160
Unique NameCN189160
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1498 contig Csv1_Contig1498:139..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_VIBC3 (Nucleoside diphosphate kinase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=ndk PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.666e-24
Identity = 56/133 (42.11%), Postives = 79/133 (59.40%), Query Frame = -3
Query:  263 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 661
            TF +IKPD V+R L+GEI  R EK G  +   K++ +    A   Y +   KPFF  L E++TSGP++  + EGE  +   R ++G TNP + A GT+R D A+    N +HGSDS  SA +EI  +FP+  I
Sbjct:    6 TFSIIKPDAVKRNLIGEIYHRIEKAGLQIIAAKMVHLSEEQASGFYAEHEGKPFFEPLKEFMTSGPIMVQVLEGENAIARYRELMGKTNPEEAACGTLRADYALSMRYNSVHGSDSPASAAREIEFFFPESEI 138          
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_SILST (Nucleoside diphosphate kinase OS=Silicibacter sp. (strain TM1040) GN=ndk PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.666e-24
Identity = 56/128 (43.75%), Postives = 79/128 (61.72%), Query Frame = -3
Query:  278 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 661
            TF +IKPD  +R L G I  +FE+ G  +   K + + +  A K Y   + +PF+  L E+++S PVV  + EGEG +   R I+GATNPA  APGTIR + A   G N +HGSD+ E+A +EIA +F
Sbjct:    6 TFSIIKPDATRRNLTGAINAKFEEAGLRIVAQKRIHMTKAQAGKFYAVHAERPFYDELCEFMSSAPVVVQVLEGEGAIAKNREIMGATNPADAAPGTIRAEFAESVGENSVHGSDAPETAAEEIAYFF 133          
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_RICBR (Nucleoside diphosphate kinase OS=Rickettsia bellii (strain RML369-C) GN=ndk PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.666e-24
Identity = 56/133 (42.11%), Postives = 81/133 (60.90%), Query Frame = -3
Query:  263 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 661
            TF MIKPD ++R  +G++    E +G  +   K+ T+ +  AE  Y++  ++PFF SL+EYITSGPVV  + +G   +   R ++GATNPA+   GTIR D+      N IHGSDS  SA++EI  +F    I
Sbjct:    6 TFSMIKPDAIKRNKIGQVNTYLENEGLKIVAQKMTTLTKYEAECFYDEHRARPFFDSLVEYITSGPVVLQVLKGMDAITLNRKVMGATNPAEAEAGTIRKDIGESIEANSIHGSDSENSAKREIKFFFKKSEI 138          
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_RICB8 (Nucleoside diphosphate kinase OS=Rickettsia bellii (strain OSU 85-389) GN=ndk PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.666e-24
Identity = 56/133 (42.11%), Postives = 81/133 (60.90%), Query Frame = -3
Query:  263 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 661
            TF MIKPD ++R  +G++    E +G  +   K+ T+ +  AE  Y++  ++PFF SL+EYITSGPVV  + +G   +   R ++GATNPA+   GTIR D+      N IHGSDS  SA++EI  +F    I
Sbjct:    6 TFSMIKPDAIKRNKIGQVNTYLENEGLKIVAQKMTTLTKYEAECFYDEHRARPFFDSLVEYITSGPVVLQVLKGMDAITLNRKVMGATNPAEAEAGTIRKDIGESIEANSIHGSDSENSAKREIKFFFKKSEI 138          
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_PSYCK (Nucleoside diphosphate kinase OS=Psychrobacter cryohalolentis (strain K5) GN=ndk PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.666e-24
Identity = 56/128 (43.75%), Postives = 76/128 (59.38%), Query Frame = -3
Query:  278 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 661
            T  +IKPD V    +G I  RFEK G  +   K+M +D   A   Y + + +PF+  L+ ++TSGPV+  + EGE  + T R I+GATNP   A GTIR D A     N +HGSDS ESA +EI+ +F
Sbjct:    6 TLSIIKPDAVAGNNIGAIYDRFEKSGLKIVAAKMMQLDDKKAGGFYAEHAERPFYNDLVSFMTSGPVLVSVLEGENAIATHRDIMGATNPKDAAEGTIRADFASSIDENAVHGSDSAESAAREISYFF 133          
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_ARCB4 (Nucleoside diphosphate kinase OS=Arcobacter butzleri (strain RM4018) GN=ndk PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.666e-24
Identity = 55/128 (42.97%), Postives = 80/128 (62.50%), Query Frame = -3
Query:  278 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 661
            T  +IKPD V + +VG+I+ RFE  G  +   K + + +  AE  Y   +++PFF  L+E++ SGPVV  + EGE  +   R ++GATNP + A GTIR D A     N +HGSDS+E+A+ EIA +F
Sbjct:    4 TLSIIKPDAVAKNVVGKILDRFESAGLKIAATKKLQLSQADAEAFYAVHAARPFFKDLVEFMISGPVVVSVLEGENAMAKNRELMGATNPKEAAAGTIRADFADSIDANAVHGSDSLENAKNEIAFFF 131          
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_AGRRK (Nucleoside diphosphate kinase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=ndk PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.666e-24
Identity = 60/133 (45.11%), Postives = 77/133 (57.89%), Query Frame = -3
Query:  263 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 661
            TF MIKPD  +R L G I   FE  G  +   K + + +  AE  Y     +PFFG L++ +TSGP V  + EGEG +   R I+GATNPA  A GTIR   A+  G N +HGSD+ E+A  EIA WF +  I
Sbjct:    6 TFSMIKPDATKRNLTGAITKIFEDNGLRVIASKRVWMSKREAEGFYAVHKERPFFGELVDGMTSGPTVVQVLEGEGAILKNREIMGATNPANAAEGTIRKIHALSIGENSVHGSDAPETAAVEIAYWFSETEI 138          
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_ACISJ (Nucleoside diphosphate kinase OS=Acidovorax sp. (strain JS42) GN=ndk PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.666e-24
Identity = 53/129 (41.09%), Postives = 79/129 (61.24%), Query Frame = -3
Query:  275 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 661
            T  +IKPD V + ++G+I  RFE  G  +   +++ + R  AE+ Y     +PFF  L++++ SGPV+    EGE  V   R ++GAT+P + APGTIR D A     N +HGSD+ E+AQ E+A +FP
Sbjct:    6 TLSIIKPDAVAKNVIGQIYARFEAAGLKIAAARMIHLSRAEAEQFYAVHKERPFFKDLVDFMISGPVMVQALEGENAVLKNRELMGATDPKKAAPGTIRADFADSIDANAVHGSDAAETAQVEVAFFFP 134          
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_SULNB (Nucleoside diphosphate kinase OS=Sulfurovum sp. (strain NBC37-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.482e-24
Identity = 55/128 (42.97%), Postives = 78/128 (60.94%), Query Frame = -3
Query:  278 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 661
            T  +IKPD V + ++G+I+ RFE  G  +   K   + R  AE  Y   + +PFF  L++++ SGPVV  + EGE  +   R ++GATNPA+  PGTIR D A     N +HGSDSVE+A+ EI  +F
Sbjct:    4 TLSIIKPDAVAKNVIGQILARFEAAGLRIAATKKTRLSRVDAEAFYAIHAERPFFKDLVDFMISGPVVVTVLEGENAMAKNRELMGATNPAEAEPGTIRADFADSIDANAVHGSDSVENAEIEINFFF 131          
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_SINMW (Nucleoside diphosphate kinase OS=Sinorhizobium medicae (strain WSM419) GN=ndk PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.482e-24
Identity = 57/128 (44.53%), Postives = 75/128 (58.59%), Query Frame = -3
Query:  278 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 661
            TF MIKPD  +R L G I    E  G  +   K + + R  AE  Y     +PFFG L+E+++SGP V  + EGE  +   R ++GATNPA  A GTIR   A+  G N +HGSD+ E+A +EIA WF
Sbjct:    6 TFSMIKPDATKRNLTGAITKMLEDAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPANAAEGTIRKVHALSIGENSVHGSDAPETAAEEIAYWF 133          
The following BLAST results are available for this feature:
BLAST of CN189160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_VIBC32.666e-2442.11Nucleoside diphosphate kinase OS=Vibrio cholerae s... [more]
NDK_SILST2.666e-2443.75Nucleoside diphosphate kinase OS=Silicibacter sp. ... [more]
NDK_RICBR2.666e-2442.11Nucleoside diphosphate kinase OS=Rickettsia bellii... [more]
NDK_RICB82.666e-2442.11Nucleoside diphosphate kinase OS=Rickettsia bellii... [more]
NDK_PSYCK2.666e-2443.75Nucleoside diphosphate kinase OS=Psychrobacter cry... [more]
NDK_ARCB42.666e-2442.97Nucleoside diphosphate kinase OS=Arcobacter butzle... [more]
NDK_AGRRK2.666e-2445.11Nucleoside diphosphate kinase OS=Agrobacterium rad... [more]
NDK_ACISJ2.666e-2441.09Nucleoside diphosphate kinase OS=Acidovorax sp. (s... [more]
NDK_SULNB3.482e-2442.97Nucleoside diphosphate kinase OS=Sulfurovum sp. (s... [more]
NDK_SINMW3.482e-2444.53Nucleoside diphosphate kinase OS=Sinorhizobium med... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001G16_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001G16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189160 ID=CN189160; Name=CN189160; organism=Citrus sinensis; type=EST; length=663bp
TTTTTTTTTTTTTTTTTCATAATACAGTCAACAAAAAAGCTTAAATATTG
TATATGGCAACCACAAAAATAAAAGCAGCCAACATAACCAGGATTGGTCT
CAATTTAACTCAATACTTCATAACAGTTCACCAACAAGGAGTAACCATAA
ATAAGGAAATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGAACAATT
AGGCTCCTCAACCAAACATTAGTTTACTCATAAATCCAAGGGTGAAGGCT
GCTCTGCCAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTTCTTTCT
GGGCACTCTCAACTGAGTCACTTCCATGGATAATATTCCTGCCCGTCACG
ATAGCCAAATCACCACGGATGGTTCCAGGAGCAAACTGCGCAGGGTTGGT
GGCTCCAATAATAGTGCGGCCAGTCTTAACAACACCTTCACCCTCCCAAA
TCATAGCAACAACAGGACCAGAGGTAATGTACTCAATCAAAGAACCAAAG
AAAGGCTTCGATGACAAATCCTCATAGTGCTTCTCAGCAAAAGGGCGGTC
CACAGTCATAAGCTTCAAACCCTTCAAAGAAAAACCCTTCTTCTCAAATC
TGATGATGATTTCACCAACAAGGCCTCTTTGGACCCCATCGGGCTTGATC
ATGATGAAAGTTT
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