CN189160

Overview
NameCN189160
Unique NameCN189160
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1498 contig Csv1_Contig1498:139..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDKB_PIG (Nucleoside diphosphate kinase B OS=Sus scrofa GN=NME2 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.227e-46
Identity = 89/146 (60.96%), Postives = 108/146 (73.97%), Query Frame = -3
Query:  227 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 661
            TFI +KPDGVQRGLVGEII RFE+KGF L  LK +       ++HY DL  +PFF  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA   PGTIRGD  I  GRNIIHGSDSV+SA+KEI+LWF P+  + ++S    WIYE
Sbjct:    7 TFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPFFPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVEYKSCAFDWIYE 152          
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDKA2_XENLA (Nucleoside diphosphate kinase A2 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.521e-46
Identity = 87/146 (59.59%), Postives = 108/146 (73.97%), Query Frame = -3
Query:  227 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 661
            TFI IKPDGVQRGL+G+II RFE+KGF L  +K +   +    +HY DL  +PF+  L+EY+ SGPV+AM+WEG  VVKTGR ++G TNPA   PGTIRGDL I  GRNIIHGSDSV+SA KEIALWF D   + ++S  + W+YE
Sbjct:    8 TFIAIKPDGVQRGLMGDIIKRFEQKGFRLVAMKFLQASQDLLRQHYIDLKDRPFYPGLVEYMNSGPVLAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDLCIQVGRNIIHGSDSVDSANKEIALWFKDEELVEYKSCAYEWVYE 153          
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_SYNP2 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ndk PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 7.211e-46
Identity = 85/146 (58.22%), Postives = 108/146 (73.97%), Query Frame = -3
Query:  227 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 661
            TF+M+KPDGVQRGLVG++I RFE KGF L GLKL++V R  AE+HY     +PFFGSL+E+I S PVVAM+WEG+G +   R IIGATNP +  PGTIRGD  +  GRN+IHGSD  ++A  EIALWF +  + NW+ +   W+YE
Sbjct:    4 TFVMVKPDGVQRGLVGDVIRRFEAKGFKLVGLKLVSVSRELAEQHYGVHRERPFFGSLVEFIISVPVVAMVWEGKGAIAAARKIIGATNPLEAEPGTIRGDFGVDIGRNLIHGSDGPDTAASEIALWFSESELANWEPATKAWLYE 149          
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_GLOVI (Nucleoside diphosphate kinase OS=Gloeobacter violaceus GN=ndk PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.230e-45
Identity = 89/146 (60.96%), Postives = 109/146 (74.66%), Query Frame = -3
Query:  227 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 661
            TFI IKPDGVQRGLVGEI+ RFE++GF L GLKLM V    A+KHY +   +PFFG L+ +ITS PVVA++ EG+GVV T R ++G TNP     GTIRGD  I  GRNIIHGSDS+ESA++EIALWF P   + WQ++L  W+YE
Sbjct:    4 TFIAIKPDGVQRGLVGEILQRFERRGFKLVGLKLMQVSEALAQKHYAEHKERPFFGGLVAFITSSPVVAVVLEGKGVVATARAMMGVTNPLNSPLGTIRGDYGIDIGRNIIHGSDSLESAEREIALWFAPAELLEWQATLGSWVYE 149          
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_GINCI (Nucleoside diphosphate kinase (Fragment) OS=Ginglymostoma cirratum PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.230e-45
Identity = 88/146 (60.27%), Postives = 109/146 (74.66%), Query Frame = -3
Query:  227 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP-DGPINWQSSLHPWIYE 661
            TFI +KPDGVQR +VGE+I RFE+KGF L  +K +   +   EKHY +LS KPF+  LI+Y++SGPVVAM+WEG  VVKTGR ++G TNPA   PGTIRGD  I  GRNIIHGSDSVESA+KEI+LWF  +  + +Q+    WIYE
Sbjct:    6 TFIAVKPDGVQRCIVGEVIKRFEQKGFKLVAMKFLQAPKDLLEKHYCELSDKPFYPKLIKYMSSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAKKEISLWFKREELVEYQNCAQDWIYE 151          
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_CARHZ (Nucleoside diphosphate kinase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=ndk PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.606e-45
Identity = 89/146 (60.96%), Postives = 110/146 (75.34%), Query Frame = -3
Query:  227 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 661
            TFIM+KPDGVQRGLVGEII RFEK+GF L GLKLM + R  AE HY +   KPFF  L+ +ITSGPVVAM+WEG+ V+ T R ++GATNP +  PGTIRG   I  GRN+IHGSDS ESA +EIAL+F +   ++++ +L  WIYE
Sbjct:    4 TFIMVKPDGVQRGLVGEIISRFEKRGFKLVGLKLMQISRELAETHYGEHKGKPFFEGLLNFITSGPVVAMVWEGKEVIATAREMMGATNPLKAQPGTIRGTYGIDVGRNVIHGSDSPESAAREIALFFKEEELLSYEKTLDTWIYE 149          
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDKB_BOVIN (Nucleoside diphosphate kinase B OS=Bos taurus GN=NME2 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.098e-45
Identity = 89/146 (60.96%), Postives = 106/146 (72.60%), Query Frame = -3
Query:  227 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 661
            TFI IKPDGVQRGLVGEII RFE+KGF L  +K +       ++HY DL  +PFF  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA   PGTIRGD  I  GRNIIHGSDSV+SA+KEI LWF P+  I ++     WIYE
Sbjct:    7 TFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLQASEELLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEINLWFKPEELIEYKPCAFDWIYE 152          
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_DESAP (Nucleoside diphosphate kinase OS=Desulforudis audaxviator (strain MP104C) GN=ndk PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.579e-45
Identity = 88/146 (60.27%), Postives = 108/146 (73.97%), Query Frame = -3
Query:  227 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 661
            TF+M+KPDGVQRGLVGE+I RFE++GF L  LKL+ +DR  AE+HYE+   KPFF  L+ YITSGPV AM+ EG  VV T R ++GAT PA+  PGTIRG   I  GRNI+HGSDS  SA +EI L+F DG  I ++ +L PWIYE
Sbjct:    4 TFVMVKPDGVQRGLVGEVITRFERRGFKLVALKLLWIDRGLAERHYEEHRGKPFFDELVRYITSGPVAAMVLEGREVVTTVREMMGATQPAKALPGTIRGTYGIDVGRNIVHGSDSAASAAREIGLFFADGELIEYERALDPWIYE 149          
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDKB_CANFA (Nucleoside diphosphate kinase B OS=Canis familiaris GN=NME2 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.579e-45
Identity = 86/146 (58.90%), Postives = 109/146 (74.66%), Query Frame = -3
Query:  227 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 661
            TFI IKPDGVQRGLVG+I+ RFE+KGF L  +K +       ++HY DL  +PF+  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA   PGTIRGD  I  GRNIIHGSDSV+SA+KEI+LWF P+  ++++S    WIYE
Sbjct:    7 TFIAIKPDGVQRGLVGDIVKRFEQKGFRLVAMKFLRASEDLLKEHYIDLKDRPFYPGLVKYMHSGPVVAMVWEGLNVVKTGRMMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAFDWIYE 152          
BLAST of CN189160 vs. ExPASy Swiss-Prot
Match: NDK_SYNP6 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ndk PE=3 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 4.674e-45
Identity = 87/146 (59.59%), Postives = 107/146 (73.29%), Query Frame = -3
Query:  227 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQFAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 661
            TFI IKPDGVQRGLVG II RFE+KGF L GLK +   R  AE+HY     +PFF  L+E+ITSGP+VA++ EGEGVV   R +IGATNP    PGTIRGD  +  GRNIIHGSD++E+AQ+EIALWF    + +W  ++ PW+YE
Sbjct:    4 TFIAIKPDGVQRGLVGTIIGRFEQKGFKLVGLKQLKPSRELAEQHYAVHRERPFFNGLVEFITSGPIVAIVLEGEGVVAAARKLIGATNPLTAEPGTIRGDFGVNIGRNIIHGSDAIETAQQEIALWFSPAELSDWTPTIQPWLYE 149          
The following BLAST results are available for this feature:
BLAST of CN189160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDKB_PIG4.227e-4660.96Nucleoside diphosphate kinase B OS=Sus scrofa GN=N... [more]
NDKA2_XENLA5.521e-4659.59Nucleoside diphosphate kinase A2 OS=Xenopus laevis... [more]
NDK_SYNP27.211e-4658.22Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_GLOVI1.230e-4560.96Nucleoside diphosphate kinase OS=Gloeobacter viola... [more]
NDK_GINCI1.230e-4560.27Nucleoside diphosphate kinase (Fragment) OS=Gingly... [more]
NDK_CARHZ1.606e-4560.96Nucleoside diphosphate kinase OS=Carboxydothermus ... [more]
NDKB_BOVIN2.098e-4560.96Nucleoside diphosphate kinase B OS=Bos taurus GN=N... [more]
NDK_DESAP3.579e-4560.27Nucleoside diphosphate kinase OS=Desulforudis auda... [more]
NDKB_CANFA3.579e-4558.90Nucleoside diphosphate kinase B OS=Canis familiari... [more]
NDK_SYNP64.674e-4559.59Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001G16_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001G16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189160 ID=CN189160; Name=CN189160; organism=Citrus sinensis; type=EST; length=663bp
TTTTTTTTTTTTTTTTTCATAATACAGTCAACAAAAAAGCTTAAATATTG
TATATGGCAACCACAAAAATAAAAGCAGCCAACATAACCAGGATTGGTCT
CAATTTAACTCAATACTTCATAACAGTTCACCAACAAGGAGTAACCATAA
ATAAGGAAATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGAACAATT
AGGCTCCTCAACCAAACATTAGTTTACTCATAAATCCAAGGGTGAAGGCT
GCTCTGCCAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTTCTTTCT
GGGCACTCTCAACTGAGTCACTTCCATGGATAATATTCCTGCCCGTCACG
ATAGCCAAATCACCACGGATGGTTCCAGGAGCAAACTGCGCAGGGTTGGT
GGCTCCAATAATAGTGCGGCCAGTCTTAACAACACCTTCACCCTCCCAAA
TCATAGCAACAACAGGACCAGAGGTAATGTACTCAATCAAAGAACCAAAG
AAAGGCTTCGATGACAAATCCTCATAGTGCTTCTCAGCAAAAGGGCGGTC
CACAGTCATAAGCTTCAAACCCTTCAAAGAAAAACCCTTCTTCTCAAATC
TGATGATGATTTCACCAACAAGGCCTCTTTGGACCCCATCGGGCTTGATC
ATGATGAAAGTTT
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