CN189159

Overview
NameCN189159
Unique NameCN189159
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189159_ssr28 microsatellite CN189159_ssr28:28..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2013 contig Csv1_Contig2013:746..1314. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189159 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.374e-41
Identity = 79/91 (86.81%), Postives = 84/91 (92.31%), Query Frame = -2
Query:  294 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 566
            ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNK K WDD WIFWVGPFIGA +AAFYHQ++LRA+  K+LGSFRS A
Sbjct:  195 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKSKPWDDHWIFWVGPFIGAAIAAFYHQFVLRASGSKSLGSFRSAA 285          
BLAST of CN189159 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.061e-41
Identity = 76/89 (85.39%), Postives = 84/89 (94.38%), Query Frame = -2
Query:  300 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRS 566
            ARDSH+PVLAPLPIGF+VFMVHLATIPITGTGINPARSFGAAVIYN +KAWDDQWIFWVGPF+GA +AAFYHQ++LRA A+KA GS RS
Sbjct:  194 ARDSHIPVLAPLPIGFSVFMVHLATIPITGTGINPARSFGAAVIYNNQKAWDDQWIFWVGPFVGAAIAAFYHQFVLRAGAMKAYGSVRS 282          
BLAST of CN189159 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.998e-41
Identity = 78/91 (85.71%), Postives = 84/91 (92.31%), Query Frame = -2
Query:  294 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 566
            ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI+NK K WDD WIFWVGPFIGA +AAFYHQ++LRA+  K+LGSFRS A
Sbjct:  193 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKSKPWDDHWIFWVGPFIGATIAAFYHQFVLRASGSKSLGSFRSAA 283          
BLAST of CN189159 vs. ExPASy Swiss-Prot
Match: PIP25_ARATH (Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 6.819e-41
Identity = 77/89 (86.52%), Postives = 83/89 (93.26%), Query Frame = -2
Query:  300 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRS 566
            ARDSHVPVLAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IYNK+KAWD  WIFWVGPF GA +AAFYHQ++LRA AIKALGSFRS
Sbjct:  194 ARDSHVPVLAPLPIGFAVFIVHLATIPITGTGINPARSLGAAIIYNKDKAWDHHWIFWVGPFAGAAIAAFYHQFVLRAGAIKALGSFRS 282          
BLAST of CN189159 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 8.906e-41
Identity = 80/91 (87.91%), Postives = 85/91 (93.41%), Query Frame = -2
Query:  294 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 566
            ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS GAAVIYNK+KAWDDQWIFWVGP IGA +AA YHQY+LRA+A K LGS+RSNA
Sbjct:  199 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRASATK-LGSYRSNA 288          
BLAST of CN189159 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 8.906e-41
Identity = 80/91 (87.91%), Postives = 85/91 (93.41%), Query Frame = -2
Query:  294 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 566
            ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS GAAVIYNK+KAWDDQWIFWVGP IGA +AA YHQY+LRA+A K LGS+RSNA
Sbjct:  200 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRASATK-LGSYRSNA 289          
BLAST of CN189159 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.384e-40
Identity = 78/91 (85.71%), Postives = 84/91 (92.31%), Query Frame = -2
Query:  294 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 566
            ARDSH+PVLAPLPIGFAVFMVHLATIPITGTGINPARS G AVIYNK+KAWDDQWIFWVGP IGA +AA YHQY+LRA+A K LGS+RSNA
Sbjct:  199 ARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGTAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRASAAK-LGSYRSNA 288          
BLAST of CN189159 vs. ExPASy Swiss-Prot
Match: PIP26_MAIZE (Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.089e-38
Identity = 76/91 (83.52%), Postives = 81/91 (89.01%), Query Frame = -2
Query:  294 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 566
            ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS GAAV+YN  KAW DQWIFWVGPFIGA +AA YHQ +LRA+A +  GSFRSNA
Sbjct:  199 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQIVLRASA-RGYGSFRSNA 288          
BLAST of CN189159 vs. ExPASy Swiss-Prot
Match: PIP25_ORYSJ (Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.422e-38
Identity = 75/91 (82.42%), Postives = 81/91 (89.01%), Query Frame = -2
Query:  294 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 566
            ARDSHVPVLAPLPIGFAVFMVHLATIP+TGTGINPARS GAAV+YN  KAW DQWIFWVGPFIGA +AA YHQ +LRA+A +  GSFRSNA
Sbjct:  194 ARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQIVLRASA-RGYGSFRSNA 283          
BLAST of CN189159 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.425e-38
Identity = 76/91 (83.52%), Postives = 80/91 (87.91%), Query Frame = -2
Query:  294 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 566
            ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS G AV+YN  KAW DQWIFWVGPFIGA +AA YHQ ILRA+A +  GSFRSNA
Sbjct:  197 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGVAVVYNNNKAWSDQWIFWVGPFIGAAIAALYHQVILRASA-RGYGSFRSNA 286          
The following BLAST results are available for this feature:
BLAST of CN189159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
PIP21_ARATH1.374e-4186.81Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]
PIP26_ARATH3.061e-4185.39Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]
PIP23_ARATH3.998e-4185.71Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]
PIP25_ARATH6.819e-4186.52Probable aquaporin PIP2-5 OS=Arabidopsis thaliana ... [more]
PIP24_MAIZE8.906e-4187.91Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]
PIP23_MAIZE8.906e-4187.91Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1[more]
PIP22_ORYSJ3.384e-4085.71Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]
PIP26_MAIZE1.089e-3883.52Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1[more]
PIP25_ORYSJ1.422e-3882.42Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica G... [more]
PIP24_ORYSJ2.425e-3883.52Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001G16_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001G16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189159 ID=CN189159; Name=CN189159; organism=Citrus sinensis; type=EST; length=570bp
CCTTTTTAAGAAAGGATATATAAAAAACACCACCACCACTTATAAACACA
CCCAAAGAAAAAAATTAAAATGGGATACCAAAATCCACCCTTACACATAG
ATAAAGCATAGGCATAAAATGCATAATGTTCAAATATCTACAATTCAATA
GCCCTCTAATTCAGCTCAAATTCAATGGCCCTCTAAAGAGCTTGAAAAGA
GATTTCTTAAAGGGCCTTCGTAACAGACTTGCACTCCTGATCATGCTGTA
AATTTTTCACCTTGGAAGCACCAGACATCATATTTAAAGCTTAAGCATTG
CTCCTGAAGGATCCAAGAGCCTTAATGGCTGCTGCCCTGAGAATGTATTG
GTGGTAGAATGCAGCAACGAAAGCTCCAATGAATGGTCCAACCCAGAAGA
TCCATTGGTCATCCCAGGCTTTCTCCTTGTTGTAGATCACAGCAGCTCCA
AAACTCCTAGCTGGGTTGATGCCGGTTCCGGTGATGGGGATGGTGGCCAA
GTGAACCATGAACACAGCAAACCCAATGGGGAGTGGTGCCAAGACCGGAA
CATGGGAGTCTCTTGCGCCT
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