CN189159

Overview
NameCN189159
Unique NameCN189159
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189159_ssr28 microsatellite CN189159_ssr28:28..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2013 contig Csv1_Contig2013:746..1314. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189159 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 8.074e-34
Identity = 63/83 (75.90%), Postives = 73/83 (87.95%), Query Frame = -2
Query:  318 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKA 566
            ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA+I+NK+ AWDD W+FWVGPFIGA +AA YH  ++RA   K+
Sbjct:  202 ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDNAWDDHWVFWVGPFIGAALAALYHVIVIRAIPFKS 284          
BLAST of CN189159 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 8.074e-34
Identity = 63/83 (75.90%), Postives = 73/83 (87.95%), Query Frame = -2
Query:  318 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKA 566
            ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IYNK+ +WDD W+FWVGPFIGA +AA YH  ++RA   K+
Sbjct:  202 ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRAIPFKS 284          
BLAST of CN189159 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 8.074e-34
Identity = 63/83 (75.90%), Postives = 73/83 (87.95%), Query Frame = -2
Query:  318 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKA 566
            ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IYNK+ +WDD W+FWVGPFIGA +AA YH  ++RA   K+
Sbjct:  202 ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRAIPFKS 284          
BLAST of CN189159 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 4.007e-33
Identity = 62/83 (74.70%), Postives = 73/83 (87.95%), Query Frame = -2
Query:  318 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKA 566
            ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA+++NK+  W+D WIFWVGPFIGA +AA YHQ ++RA   K+
Sbjct:  206 ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVFNKKIGWNDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 288          
BLAST of CN189159 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.007e-33
Identity = 64/78 (82.05%), Postives = 70/78 (89.74%), Query Frame = -2
Query:  333 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRA 566
            ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IYN E AW+D WIFWVGP IGA +AA YHQ I+RA
Sbjct:  203 ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNDEHAWNDHWIFWVGPMIGAALAAIYHQIIIRA 280          
BLAST of CN189159 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.007e-33
Identity = 63/83 (75.90%), Postives = 72/83 (86.75%), Query Frame = -2
Query:  318 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKA 566
            ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA++YN+  AW+D WIFWVGPFIGA +AA YH  I+RA   K+
Sbjct:  204 ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVYNRSHAWNDHWIFWVGPFIGAALAAIYHVVIIRALPFKS 286          
BLAST of CN189159 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.166e-32
Identity = 62/83 (74.70%), Postives = 71/83 (85.54%), Query Frame = -2
Query:  318 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKA 566
            ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA++YN+  AW D WIFWVGPFIGA +AA YH  ++RA   K+
Sbjct:  204 ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVYNRAHAWHDHWIFWVGPFIGAALAAIYHVVVIRAIPFKS 286          
BLAST of CN189159 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.597e-32
Identity = 64/83 (77.11%), Postives = 71/83 (85.54%), Query Frame = -2
Query:  318 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKA 566
            ARDSHVP+LAPLPIGFAVF+VHLAT+ ITGTGINPARS GAAVIYN+  AW D WIFWVGPFIGA +AA YHQ I+RA   K+
Sbjct:  203 ARDSHVPILAPLPIGFAVFLVHLATMGITGTGINPARSLGAAVIYNQHHAWADHWIFWVGPFIGAALAAIYHQVIIRAIPFKS 285          
BLAST of CN189159 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.091e-30
Identity = 61/83 (73.49%), Postives = 67/83 (80.72%), Query Frame = -2
Query:  318 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKA 566
            ARDSHVP LAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IY+    W   WIFWVGPF GA +AA YHQ +LRA   K+
Sbjct:  210 ARDSHVPALAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYDNPHGWHGHWIFWVGPFAGAALAAVYHQVVLRAIPFKS 292          
BLAST of CN189159 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.275e-28
Identity = 62/88 (70.45%), Postives = 65/88 (73.86%), Query Frame = -2
Query:  309 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI--YNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGS 566
            ARDSHVPVLAPLPIG AV +VHLATIPITGTGINPARS G A++      KAW   WIFWVGPF GA  A  YH YILR AA KA  S
Sbjct:  185 ARDSHVPVLAPLPIGLAVLVVHLATIPITGTGINPARSLGPALVLGLGTTKAWSHLWIFWVGPFAGAAAAMIYHHYILRGAAAKAFAS 272          
The following BLAST results are available for this feature:
BLAST of CN189159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
PIP12_ARATH8.074e-3475.90Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
PIP11_VICFA8.074e-3475.90Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]
PIP11_ARATH8.074e-3475.90Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
PIP2_PEA4.007e-3374.70Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP1_SOLLC4.007e-3382.05Probable aquaporin PIP-type pTOM75 OS=Solanum lyco... [more]
PIP15_MAIZE4.007e-3375.90Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
PIP13_ORYSJ1.166e-3274.70Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
PIP11_MAIZE2.597e-3277.11Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]
PIP16_MAIZE1.091e-3073.49Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1[more]
PIP28_ORYSJ2.275e-2870.45Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001G16_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001G16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189159 ID=CN189159; Name=CN189159; organism=Citrus sinensis; type=EST; length=570bp
CCTTTTTAAGAAAGGATATATAAAAAACACCACCACCACTTATAAACACA
CCCAAAGAAAAAAATTAAAATGGGATACCAAAATCCACCCTTACACATAG
ATAAAGCATAGGCATAAAATGCATAATGTTCAAATATCTACAATTCAATA
GCCCTCTAATTCAGCTCAAATTCAATGGCCCTCTAAAGAGCTTGAAAAGA
GATTTCTTAAAGGGCCTTCGTAACAGACTTGCACTCCTGATCATGCTGTA
AATTTTTCACCTTGGAAGCACCAGACATCATATTTAAAGCTTAAGCATTG
CTCCTGAAGGATCCAAGAGCCTTAATGGCTGCTGCCCTGAGAATGTATTG
GTGGTAGAATGCAGCAACGAAAGCTCCAATGAATGGTCCAACCCAGAAGA
TCCATTGGTCATCCCAGGCTTTCTCCTTGTTGTAGATCACAGCAGCTCCA
AAACTCCTAGCTGGGTTGATGCCGGTTCCGGTGATGGGGATGGTGGCCAA
GTGAACCATGAACACAGCAAACCCAATGGGGAGTGGTGCCAAGACCGGAA
CATGGGAGTCTCTTGCGCCT
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