CN189155

Overview
NameCN189155
Unique NameCN189155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189155_ssr248 microsatellite CN189155_ssr248:248..262. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN189155 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.280e-14
Identity = 39/89 (43.82%), Postives = 54/89 (60.67%), Query Frame = -2
Query:  427 LEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRY 693
            L  G F G+ELL+W L       LP S+ T   +  +EAF L A +L+++   FR +  +++L+ T RYYS  W+TWAA  IQ AWRRY
Sbjct:  549 LGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALKADDLKFVASQFR-RLHSKQLRHTFRYYSQQWKTWAACFIQAAWRRY 636          
BLAST of CN189155 vs. ExPASy Swiss-Prot
Match: CNG15_ARATH (Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.280e-14
Identity = 39/93 (41.94%), Postives = 59/93 (63.44%), Query Frame = -2
Query:  418 VLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMR 696
            ++ PG F G+ELL+W L    +  LP+S+ T   +  +EAF L A++L+++   FR +   ++L+   R+YS  WRTWAA  IQ AWRR+R R
Sbjct:  533 LIGPGDFCGEELLTWALDPRPVVILPSSTRTVKAICEVEAFALKAEDLQFVASQFR-RLHTKQLRHKFRFYSHQWRTWAACFIQAAWRRHRKR 624          
BLAST of CN189155 vs. ExPASy Swiss-Prot
Match: CNG16_ARATH (Probable cyclic nucleotide-gated ion channel 16 OS=Arabidopsis thaliana GN=CNGC16 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.672e-14
Identity = 38/92 (41.30%), Postives = 54/92 (58.70%), Query Frame = -2
Query:  418 LEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMR 693
            L PG F G+ELL+W L       LP S+ T   +  +EAF L A++L+++ + FR +  +++L+   RYYS  WR W    IQ AWRRY  R
Sbjct:  520 LRPGDFCGEELLTWALVPNINHNLPLSTRTVRTLSEVEAFALRAEDLKFVANQFR-RLHSKKLQHAFRYYSHQWRAWGTCFIQAAWRRYMKR 610          
BLAST of CN189155 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 42/122 (34.43%), Postives = 64/122 (52.46%), Query Frame = -2
Query:  328 LEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVISVTENGEGNESNRLMRYAAMFMSI 693
            L+P  F G++LL+W L        P S+ T   +  +EAF L A +L+ +   FR +  +++L+ T R+YS  WRTW A  IQ AWRR+  R     ++  E+   N   +  R AA   S+
Sbjct:  537 LKPSDFCGEDLLTWALDPQSSSHFPISTRTVQALTEVEAFALAADDLKLVASQFR-RLHSKQLQHTFRFYSVQWRTWGASFIQAAWRRHCRRKLARSLTEEEDRFRNAITKRERNAASSSSL 657          
BLAST of CN189155 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 35/92 (38.04%), Postives = 52/92 (56.52%), Query Frame = -2
Query:  418 LEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMR 693
            L+   F G++LL W L        P S+ T   +  +EAF L A++L+ +   FR +  +++L+ T R+YS  WRTW+   IQ AWRRY  R
Sbjct:  536 LKASDFCGEDLLPWALDPQSSSHFPISTRTVQALTEVEAFALTAEDLKSVASQFR-RLHSKQLQHTFRFYSVQWRTWSVSFIQAAWRRYCRR 626          
The following BLAST results are available for this feature:
BLAST of CN189155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
CNGC1_ARATH1.280e-1443.82Cyclic nucleotide-gated ion channel 1 OS=Arabidops... [more]
CNG15_ARATH1.280e-1441.94Putative cyclic nucleotide-gated ion channel 15 OS... [more]
CNG16_ARATH1.672e-1441.30Probable cyclic nucleotide-gated ion channel 16 OS... [more]
CNG13_ARATH2.414e-1334.43Putative cyclic nucleotide-gated ion channel 13 OS... [more]
CNG10_ARATH5.947e-1238.04Probable cyclic nucleotide-gated ion channel 10 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001G13_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001G13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189155 ID=CN189155; Name=CN189155; organism=Citrus sinensis; type=EST; length=706bp
TTTTTTTTTTTTTTTTTACCTTCAAATAGTCTTCAACTTTTTTATTAATC
CCAAATAATTTATTTTAAAAAAAAAATTCATTCAAATATGATTAACTAAT
GACTGAGAAATCTAGCTTGCTTTCTTATCATTCATCTGCTAGCAAAATCC
TGAACTAGGAAAGAATTTCCCCCCCTTTTTCTTTTATTTCAAATCCAATT
GTCTAAATCGAGTGCAAGTTCGATGTTCCATGGCTAAATTGCTACCCAAA
GAAAAGAAAAGAAACTTTATTCATCAATGGAAGAATTGCACGACACGGTG
TGCTTATTCAAGGTGATCATGTGGTCTAATTGACATGAACATAGCAGCAT
ATCTCATAAGTCTGTTGCTCTCATTGCCTTCTCCATTTTCAGTTACAGAA
ATCACAGGACCTCTAGTCCTCATCCTGTATCTTCTCCAAGCAAATTGAAT
ATTCACAGCCGCCCATGTCCTCCAATTTGATGAATAATATCTCGCGGTTC
TCTTCAGCCTTTCGTTGGCAAATTTGTACCGGAAATGATCTGTGATGTAT
CGGAGATTCTTTGCATCTAACCCAAATGCTTCTATGGATTCCATACAAAC
AAATGTTGCTGATGATGCTGGCAGCCGATCGATAAACGGGCGGCGTAGGC
ACCAAGAAAGCAACTCATCACCCAGAAACCCTCCTGGTTCAAGCACACTT
GTTGCT
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