CN189136
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN189136 vs. ExPASy Swiss-Prot
Match: RL24_SCHJA (60S ribosomal protein L24 OS=Schistosoma japonicum GN=RPL24 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 3.973e-18 Identity = 44/110 (40.00%), Postives = 68/110 (61.82%), Query Frame = 1 Query: 25 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 354 +K E+C +SG K+YPG G R IR D + F F N K +R + + P +++WT +YR+++KK ++ E K + K +R I GA+L I +R +KPEVR A R+ A+ Sbjct: 1 MKLEVCSYSGFKVYPGHGKRVIRVDGRSFYFINKKSERSHYLKRNPREISWTVLYRRKYKKGMSEEQTKNELSVLTKT-ARGIAGASLAEIMAKRNQKPEVRKAMRDQAI 109
BLAST of CN189136 vs. ExPASy Swiss-Prot
Match: RLP24_SCHPO (Ribosome biogenesis protein rlp24 OS=Schizosaccharomyces pombe GN=rlp24 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.013e-13 Identity = 36/96 (37.50%), Postives = 53/96 (55.21%), Query Frame = 1 Query: 25 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDI---AAEAVKKKRRATKKPYSRSIVGATLEVIQK 303 ++ C F +YPG GI F+R+DS+VF F SKC + F + P K+ WT YRK H K++ A AV RR Y R+++ TL +++ Sbjct: 1 MRVHTCYFCSGPVYPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPRKVAWTKAYRKAHGKEMVYDTALAVTAARRNVPVRYDRNVIATTLNAMKR 96
BLAST of CN189136 vs. ExPASy Swiss-Prot
Match: RLP24_DROME (Probable ribosome biogenesis protein RLP24 OS=Drosophila melanogaster GN=CG6764 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.120e-12 Identity = 41/104 (39.42%), Postives = 57/104 (54.81%), Query Frame = 1 Query: 25 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEA--VKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVR 330 ++ + C F +KIYPG G++F+R+D +VF F KC + F + P K+ WT YRK K++A + +KRR YSR LE I KR TE E R Sbjct: 1 MRIQTCYFCSSKIYPGHGVQFVRNDCKVFKFCRGKCHKAFKRKKNPRKVGWTKAYRKAAGKELAIDPSFEFEKRRNVPMKYSRETWQKGLEAI-KRVTEIKEKR 103
BLAST of CN189136 vs. ExPASy Swiss-Prot
Match: RLP24_ARATH (Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana GN=At2g44860 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.462e-12 Identity = 34/95 (35.79%), Postives = 55/95 (57.89%), Query Frame = 1 Query: 25 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAV--KKKRRATKKPYSRSIVGATLEVIQK 303 ++ E C F + IYPG GI+F+R+D+++F F SKC + F + P K+ WT +R H KD+ + +K+R + Y R++ TL I+K Sbjct: 1 MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHGKDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKK 95
BLAST of CN189136 vs. ExPASy Swiss-Prot
Match: RLP24_YARLI (Ribosome biogenesis protein RLP24 OS=Yarrowia lipolytica GN=RLP24 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.494e-12 Identity = 35/90 (38.89%), Postives = 51/90 (56.67%), Query Frame = 1 Query: 40 CKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVK--KKRRATKKPYSRSIVGATLEVIQK 303 C F + +YPGKGI F+R+DS+ F F SKC + F + P KL WT +RK K++ ++ RR Y+R +V TLE ++K Sbjct: 6 CHFCSSPVYPGKGIMFVRNDSKEFRFCRSKCHKNFKMKRNPRKLRWTKAFRKAAGKEMVVDSTLAFSARRDVPVRYNRDLVEKTLEAMEK 95
BLAST of CN189136 vs. ExPASy Swiss-Prot
Match: RLP24_DANRE (Probable ribosome biogenesis protein RLP24 OS=Danio rerio GN=rsl24d1 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.255e-12 Identity = 34/95 (35.79%), Postives = 53/95 (55.79%), Query Frame = 1 Query: 25 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAE--AVKKKRRATKKPYSRSIVGATLEVIQK 303 ++ E C F A +YPG G+ F+R+D +VF F SKC + F + P K WT +RK K++ + +KRR T Y+R + T+E ++K Sbjct: 1 MRIEKCYFCSAPVYPGHGMMFVRNDCKVFRFCRSKCHKNFKKKRNPRKTRWTKAFRKSAGKELTVDNSLEFEKRRNTPVKYNRELWSKTVEAMRK 95
BLAST of CN189136 vs. ExPASy Swiss-Prot
Match: RLP24_CANGA (Ribosome biogenesis protein RLP24 OS=Candida glabrata GN=RLP24 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12 Identity = 33/90 (36.67%), Postives = 51/90 (56.67%), Query Frame = 1 Query: 40 CKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVK--KKRRATKKPYSRSIVGATLEVIQK 303 C F + +YPG GI F+R+D++ F F SKC + F R P KL WT +RK K++A ++ +RR Y+R +V TL+ + + Sbjct: 6 CHFCSSPVYPGHGIMFVRNDAKEFRFCRSKCHKNFKQRRNPRKLKWTKAFRKAAGKELAVDSTLTFAQRRNVPVRYNRELVATTLKAMSR 95
BLAST of CN189136 vs. ExPASy Swiss-Prot
Match: RLP24_ASHGO (Ribosome biogenesis protein RLP24 OS=Ashbya gossypii GN=RLP24 PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11 Identity = 38/105 (36.19%), Postives = 54/105 (51.43%), Query Frame = 1 Query: 40 CKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVK--KKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREA 348 C F + +YPG GI F+R+D++ F F SKC + F R P KL WT +RK K++A ++ +RR Y+R +V TL K T E+R A Sbjct: 6 CHFCSSPVYPGHGIMFVRNDAKEFRFCRSKCHKAFKQRRNPRKLKWTKAFRKAAGKELAVDSTLTFAQRRNVPVRYNRELVETTL----KAMTRIEEIRQKRERA 106
BLAST of CN189136 vs. ExPASy Swiss-Prot
Match: RLP24_KLULA (Ribosome biogenesis protein RLP24 OS=Kluyveromyces lactis GN=RLP24 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11 Identity = 33/95 (34.74%), Postives = 52/95 (54.74%), Query Frame = 1 Query: 25 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVK--KKRRATKKPYSRSIVGATLEVIQK 303 ++ C F + YPG GI F+R+D++ F F SKC + F R P KL WT +RK K++A ++ +RR Y+R +V TL+ + + Sbjct: 1 MRVYACHFCSSPCYPGHGIMFVRNDAKEFRFCRSKCHKAFKQRRNPRKLRWTKAFRKAAGKELAVDSTLTFAQRRNVPVRYNRELVATTLKAMSR 95
BLAST of CN189136 vs. ExPASy Swiss-Prot
Match: RL24_CAEEL (60S ribosomal protein L24 OS=Caenorhabditis elegans GN=rpl-24.1 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11 Identity = 35/111 (31.53%), Postives = 61/111 (54.95%), Query Frame = 1 Query: 25 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDI--AAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAA 351 +K E C +SG KI+PG G R +R+D +V +F + K + R P + WT +YR ++KK + +KK + + + +R++ G +L+ I +R + + R RE A Sbjct: 1 MKVETCVYSGYKIHPGHGKRLVRTDGKVQIFLSGKALKGAKLRRNPRDIRWTVLYRIKNKKGTHGQEQVTRKKTKKSVQVVNRAVAGLSLDAILAKRNQTEDFRRQQREQA 111 The following BLAST results are available for this feature:
BLAST of CN189136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 41
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189136 ID=CN189136; Name=CN189136; organism=Citrus sinensis; type=EST; length=681bpback to top |