CN189136

Overview
NameCN189136
Unique NameCN189136
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1278 contig Csv1_Contig1278:24..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN189136 vs. ExPASy Swiss-Prot
Match: RLP24_YEAST (Ribosome biogenesis protein RLP24 OS=Saccharomyces cerevisiae GN=RLP24 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 33/90 (36.67%), Postives = 50/90 (55.56%), Query Frame = 1 
Query:   40 CKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVK--KKRRATKKPYSRSIVGATLEVIQK 303
            C F  +  YPG GI F+R+D++ F F  SKC + F  R  P KL WT  +RK   K++A ++     +RR     Y+R +V  TL+ + +
Sbjct:    6 CHFCSSPCYPGHGIMFVRNDAKEFRFCRSKCHKAFKQRRNPRKLKWTKAFRKAAGKELAVDSTLTFAQRRNVPVRYNRELVATTLKAMAR 95
The following BLAST results are available for this feature:
BLAST of CN189136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RLP24_YEAST2.758e-1136.67Ribosome biogenesis protein RLP24 OS=Saccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001G01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189136 ID=CN189136; Name=CN189136; organism=Citrus sinensis; type=EST; length=681bp
GACCCTTCATCAGAAACCATGGTTCTCAAGACTGAACTTTGCAAATTCAG
CGGTGCCAAGATATACCCTGGTAAGGGTATCAGATTTATTCGTTCAGACT
CTCAGGTTTTCCTCTTTGCCAATTCTAAATGCAAGAGGTACTTCCACAAC
CGATTGAAGCCATCGAAGCTTACATGGACAGCCATGTACAGGAAACAGCA
CAAGAAGGACATTGCTGCTGAGGCAGTTAAGAAGAAGCGTCGTGCCACTA
AGAAGCCCTATTCAAGATCTATAGTTGGTGCCACCTTGGAAGTTATCCAG
AAGAGAAGAACTGAGAAGCCAGAAGTCCGAGATGCTGCACGGGAGGCTGC
ACTTCGTGAAATTAAGGAGAGGATCAAGAAGACTAAGGATGAAAAGAAGG
CAAAGAAAGCGGAGACGATGTCCAAGTCACAGAAGTCTCAAGTCAAAAGT
AGCGTGCCTAAGGGTGCCGCCCCGAAGGGCCCCAAGCTAGGCGGTGGTGG
TGGAAAGCGGTGAATTGCTTAGTCTTTTCAAATCTGCAGATGAGTATAAA
CAATTAGAACTTAATTTCATGTTTCTTGTATGGATTGATCAATCATGTAG
ACCAGATTTTTTTGTGGTTTTTGTTTATGGTTTTGCATTGNGAGTTAATT
TGCCTTTTACTTAATTGAATCAAAGTTTTCT
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