CN189113

Overview
NameCN189113
Unique NameCN189113
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9649 contig Csv1_Contig9649:724..1440. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189113 vs. ExPASy Swiss-Prot
Match: KGUA_LACDA (Guanylate kinase OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=gmk PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 35/95 (36.84%), Postives = 57/95 (60.00%), Query Frame = -2
Query:  423 VEAVADAGKRCILDIDVQGARSVKASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLK 707
            V+ +  AGK  +L+IDV GAR+V+    + +FIF+ PP +  L +RL  RGTE+ED I  R+  A++EI   +    +D+ + ND +     ++K
Sbjct:   89 VKEMLAAGKDVLLEIDVNGARTVRQQMPEGVFIFLTPPDLHTLRDRLEHRGTESEDVIRGRIAQARKEILVMQD---YDYAVVNDTVANAVNHIK 180          
BLAST of CN189113 vs. ExPASy Swiss-Prot
Match: KGUA_DEIGD (Guanylate kinase OS=Deinococcus geothermalis (strain DSM 11300) GN=gmk PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 37/98 (37.76%), Postives = 59/98 (60.20%), Query Frame = -2
Query:  423 EAVEAVADAGKRCILDIDVQGARSVKASP-LDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLK 713
            E +EA    G+  +L+I+V+GA  VK     +A+ +FI PPS+ EL  RL  R TET ++I KRL+ A++EI    ++  F +++ ND L+     L+
Sbjct:  102 EPIEAALARGQDVVLEIEVEGAMQVKERMGEEAVLVFIMPPSLTELRRRLTGRATETPERIEKRLQRARDEI---MAAHAFRYVIVNDDLDRAVRELQ 196          
BLAST of CN189113 vs. ExPASy Swiss-Prot
Match: KGUA_ANADE (Guanylate kinase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=gmk PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 39/95 (41.05%), Postives = 58/95 (61.05%), Query Frame = -2
Query:  423 EAVADAGKRCILDIDVQGARSVKAS-PLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLK 704
            EA+A AGK  + DIDVQG   +KA+ P  A  + + PP   ELE RLR R T++++ I +RL  A+ E+ +G   G +D+++ ND LE     L+
Sbjct:   98 EALA-AGKLALFDIDVQGGAQIKAAWPQQAATVLVLPPDEAELERRLRGRDTDSDETIRRRLVAARAEVARG--LGSYDYVVVNDVLEGALAQLQ 189          
BLAST of CN189113 vs. ExPASy Swiss-Prot
Match: KGUA_AGRT5 (Guanylate kinase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=gmk PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 36/98 (36.73%), Postives = 58/98 (59.18%), Query Frame = -2
Query:  423 EAVEAVADAGKRCILDIDVQGARSVKAS-PLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLK 713
            E VEA   AG+  + DID QGA  ++     D + IFI PP+M EL+ RL  R  ++E+ I  RL N++ EI+  +    +D+++ ND L+  +E ++
Sbjct:   96 EPVEAAMAAGRDMLFDIDWQGAEQLQDKMKADVVSIFILPPTMTELQSRLHRRAEDSEEVIKTRLLNSRAEIEHWRD---YDYVILNDDLQAAFEGIE 190          
The following BLAST results are available for this feature:
BLAST of CN189113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
KGUA_LACDA8.691e-1136.84Guanylate kinase OS=Lactobacillus delbrueckii subs... [more]
KGUA_DEIGD8.691e-1137.76Guanylate kinase OS=Deinococcus geothermalis (stra... [more]
KGUA_ANADE8.691e-1141.05Guanylate kinase OS=Anaeromyxobacter dehalogenans ... [more]
KGUA_AGRT58.691e-1136.73Guanylate kinase OS=Agrobacterium tumefaciens (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001F11_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189113 ID=CN189113; Name=CN189113; organism=Citrus sinensis; type=EST; length=717bp
TTTTTTGAGTGAAAATTGAATAAATTGAATGTCGTAGTCTTACGAAATCA
CAGGTAGAGCTTCATCAAGGCTCTTTTTTTCTAAATTATATAAGTTGAGC
TTCGAGAAATATTTTAAATGAGAAACCACGTTAGCGTCGATGAGGATGGG
AGCTATTAGCTCAACTTATTGACCCCATTTAAACCATCAGAAAATGAATC
AACTGTATAAACTTGGAGCCCTCTAGTCCGTCCAGGTGCTCCGCCTTTCA
GTGAGGATACATCCAAAACCATTAAGTTCTTTGATGCTTTTCCTTCAGCA
GCCCCACACTTTATGATGACTTTGTTAGCAACTTTTGATACTGAATGATC
AGCTGGCAAATCAATCCCTTTGGGTGAGGTTTGATGGTTGGTAGCAATAC
TCCCATCAAGTCCCAAGTGTTTCTTAAGGTTCTCGTAACACTCTTCAAGT
TTATCATTGTACAATATATGATCAAAGATGCCAGAGGATTTCCCTTGCTT
AATCTCTTCCTTGGCATTTCGGAGTCGTTTTAGGATCTGATCCTCTGTCT
CAGTTCCTCTTGCACGGAGGCGCTCCTCAAGCTCCTCCATTGAAGGTGGA
CAGATAAATATGAAAATAGCATCAAGAGGACTCGCCTTCACAGACCTCGC
CCCTTGAACATCAATATCAAGTATGCATCTCTTTCCAGCATCTGCTACTG
CCTCCACAGCTTCAACA
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