CN189113

Overview
NameCN189113
Unique NameCN189113
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9649 contig Csv1_Contig9649:724..1440. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189113 vs. ExPASy Swiss-Prot
Match: KGUA_STAAR (Guanylate kinase OS=Staphylococcus aureus (strain MRSA252) GN=gmk PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.286e-13
Identity = 34/91 (37.36%), Postives = 61/91 (67.03%), Query Frame = -2
Query:  444 VEAVEAVADAGKRCILDIDVQGARSVKASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLE 716
            V+ V+   D G    L+I+V+GA+ V+    DA+FIF+ PPS++ L ERL  RGTE++++I  R+  A++E++      ++D+++ ND++E
Sbjct:   87 VQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLDHLRERLVGRGTESDEKIQSRINEARKEVEM---MNLYDYVVVNDEVE 174          
BLAST of CN189113 vs. ExPASy Swiss-Prot
Match: KGUA_STAAB (Guanylate kinase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=gmk PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.286e-13
Identity = 34/91 (37.36%), Postives = 61/91 (67.03%), Query Frame = -2
Query:  444 VEAVEAVADAGKRCILDIDVQGARSVKASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLE 716
            V+ V+   D G    L+I+V+GA+ V+    DA+FIF+ PPS++ L ERL  RGTE++++I  R+  A++E++      ++D+++ ND++E
Sbjct:   87 VQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLDHLRERLVGRGTESDEKIQSRINEARKEVEM---MNLYDYVVVNDEVE 174          
BLAST of CN189113 vs. ExPASy Swiss-Prot
Match: KGUA_CHRVO (Guanylate kinase OS=Chromobacterium violaceum GN=gmk PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.286e-13
Identity = 41/83 (49.40%), Postives = 56/83 (67.47%), Query Frame = -2
Query:  444 DAGKRCILDIDVQGARSVKASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLE 692
            +AG+  +L+ID QGA  V+    DAI IFI PPS+EELE RLR R T+TE+ IL+RL +A+ EI +      +D+I+ ND  E
Sbjct:   94 EAGRDILLEIDWQGAEQVRKVFPDAIGIFIAPPSIEELERRLRGRDTDTEEVILRRLASARAEIDK---IAEYDYIVVNDDFE 173          
BLAST of CN189113 vs. ExPASy Swiss-Prot
Match: KGUA_ZYMMO (Guanylate kinase OS=Zymomonas mobilis GN=gmk PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 40/102 (39.22%), Postives = 62/102 (60.78%), Query Frame = -2
Query:  405 VEAVADAGKRCILDIDVQGARSV-KASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD 707
            VE +   G+  + DID QGA+ + + +  D I ++I PPS EELE RLR RGT++E+ I KR+  A  EI        +D++L ND ++EC + +K  L ++
Sbjct:   95 VEEMLHKGQDVLFDIDWQGAQQLWQQASGDTIRVYILPPSFEELERRLRGRGTDSEEVIQKRMARAASEISHWDG---YDYVLINDDMDECVKQVKNILTVE 193          
BLAST of CN189113 vs. ExPASy Swiss-Prot
Match: KGUA_STRA5 (Guanylate kinase OS=Streptococcus agalactiae serotype V GN=gmk PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 39/96 (40.62%), Postives = 58/96 (60.42%), Query Frame = -2
Query:  420 VEAVADAGKRCILDIDVQGARSVKASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 707
            V    D G    L+I+VQGA  VK+   D +FIF+ PP +EELEERL  RGT++ + I +R+  AKEEI   +    +D+ + ND++    E +K+
Sbjct:   89 VNETLDKGIDVFLEIEVQGALQVKSKVPDGVFIFLTPPDLEELEERLVGRGTDSPEVIAQRIERAKEEIALMRE---YDYAVVNDQVSLAAERVKR 181          
BLAST of CN189113 vs. ExPASy Swiss-Prot
Match: KGUA_STRA3 (Guanylate kinase OS=Streptococcus agalactiae serotype III GN=gmk PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 39/96 (40.62%), Postives = 58/96 (60.42%), Query Frame = -2
Query:  420 VEAVADAGKRCILDIDVQGARSVKASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 707
            V    D G    L+I+VQGA  VK+   D +FIF+ PP +EELEERL  RGT++ + I +R+  AKEEI   +    +D+ + ND++    E +K+
Sbjct:   89 VNETLDKGIDVFLEIEVQGALQVKSKVPDGVFIFLTPPDLEELEERLVGRGTDSPEVIAQRIERAKEEIALMRE---YDYAVVNDQVSLAAERVKR 181          
BLAST of CN189113 vs. ExPASy Swiss-Prot
Match: KGUA_STRA1 (Guanylate kinase OS=Streptococcus agalactiae serotype Ia GN=gmk PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 39/96 (40.62%), Postives = 58/96 (60.42%), Query Frame = -2
Query:  420 VEAVADAGKRCILDIDVQGARSVKASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 707
            V    D G    L+I+VQGA  VK+   D +FIF+ PP +EELEERL  RGT++ + I +R+  AKEEI   +    +D+ + ND++    E +K+
Sbjct:   89 VNETLDKGIDVFLEIEVQGALQVKSKVPDGVFIFLTPPDLEELEERLVGRGTDSPEVIAQRIERAKEEIALMRE---YDYAVVNDQVSLAAERVKR 181          
BLAST of CN189113 vs. ExPASy Swiss-Prot
Match: KGUA_ANAVT (Guanylate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gmk PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 40/97 (41.24%), Postives = 63/97 (64.95%), Query Frame = -2
Query:  423 EAVEAVADAGKRCILDIDVQGARSVKASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLK 713
            EAV     +GK  +L+I++ GAR ++AS  +A+ IFI PPS EELE+R+R RG ++E+ I +RL+ A EEI   +++  FD  + ND  E   + ++
Sbjct:  101 EAVLNQIQSGKLVVLEIELAGARQIRASFPEALSIFILPPSFEELEKRIRGRGQDSEEAIARRLQRATEEI---QAADEFDIQIVNDDFEAALQAIE 194          
BLAST of CN189113 vs. ExPASy Swiss-Prot
Match: KGUA_STAES (Guanylate kinase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gmk PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 33/91 (36.26%), Postives = 63/91 (69.23%), Query Frame = -2
Query:  444 VEAVEAVADAGKRCILDIDVQGARSVKASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLE 716
            V+ V+   + G    L+I+V+GA+ V+    DA+FIF+ PPS+++L+ERL  RGTE++++I  R+  A++E++      ++D+++ ND++E
Sbjct:   87 VQYVKDTMEEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLDDLKERLVGRGTESDEKIQSRVNEARKEVEM---MNLYDYVVVNDEVE 174          
BLAST of CN189113 vs. ExPASy Swiss-Prot
Match: KGUA_STAAN (Guanylate kinase OS=Staphylococcus aureus (strain N315) GN=gmk PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 34/91 (37.36%), Postives = 60/91 (65.93%), Query Frame = -2
Query:  444 VEAVEAVADAGKRCILDIDVQGARSVKASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLE 716
            V+ V+   D G    L+I+V+GA+ V+    DA+FIF+ PPS++ L ERL  RGTE+ ++I  R+  A++E++      ++D+++ ND++E
Sbjct:   87 VQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLDHLRERLVGRGTESNEKIQSRINEARKEVEM---MNLYDYVVVNDEVE 174          
The following BLAST results are available for this feature:
BLAST of CN189113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
KGUA_STAAR9.286e-1337.36Guanylate kinase OS=Staphylococcus aureus (strain ... [more]
KGUA_STAAB9.286e-1337.36Guanylate kinase OS=Staphylococcus aureus (strain ... [more]
KGUA_CHRVO9.286e-1349.40Guanylate kinase OS=Chromobacterium violaceum GN=g... [more]
KGUA_ZYMMO1.213e-1239.22Guanylate kinase OS=Zymomonas mobilis GN=gmk PE=3 ... [more]
KGUA_STRA51.213e-1240.63Guanylate kinase OS=Streptococcus agalactiae serot... [more]
KGUA_STRA31.213e-1240.63Guanylate kinase OS=Streptococcus agalactiae serot... [more]
KGUA_STRA11.213e-1240.63Guanylate kinase OS=Streptococcus agalactiae serot... [more]
KGUA_ANAVT1.213e-1241.24Guanylate kinase OS=Anabaena variabilis (strain AT... [more]
KGUA_STAES1.584e-1236.26Guanylate kinase OS=Staphylococcus epidermidis (st... [more]
KGUA_STAAN1.584e-1237.36Guanylate kinase OS=Staphylococcus aureus (strain ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001F11_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189113 ID=CN189113; Name=CN189113; organism=Citrus sinensis; type=EST; length=717bp
TTTTTTGAGTGAAAATTGAATAAATTGAATGTCGTAGTCTTACGAAATCA
CAGGTAGAGCTTCATCAAGGCTCTTTTTTTCTAAATTATATAAGTTGAGC
TTCGAGAAATATTTTAAATGAGAAACCACGTTAGCGTCGATGAGGATGGG
AGCTATTAGCTCAACTTATTGACCCCATTTAAACCATCAGAAAATGAATC
AACTGTATAAACTTGGAGCCCTCTAGTCCGTCCAGGTGCTCCGCCTTTCA
GTGAGGATACATCCAAAACCATTAAGTTCTTTGATGCTTTTCCTTCAGCA
GCCCCACACTTTATGATGACTTTGTTAGCAACTTTTGATACTGAATGATC
AGCTGGCAAATCAATCCCTTTGGGTGAGGTTTGATGGTTGGTAGCAATAC
TCCCATCAAGTCCCAAGTGTTTCTTAAGGTTCTCGTAACACTCTTCAAGT
TTATCATTGTACAATATATGATCAAAGATGCCAGAGGATTTCCCTTGCTT
AATCTCTTCCTTGGCATTTCGGAGTCGTTTTAGGATCTGATCCTCTGTCT
CAGTTCCTCTTGCACGGAGGCGCTCCTCAAGCTCCTCCATTGAAGGTGGA
CAGATAAATATGAAAATAGCATCAAGAGGACTCGCCTTCACAGACCTCGC
CCCTTGAACATCAATATCAAGTATGCATCTCTTTCCAGCATCTGCTACTG
CCTCCACAGCTTCAACA
back to top