CN189109

Overview
NameCN189109
Unique NameCN189109
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189109 vs. ExPASy Swiss-Prot
Match: PPID_CRYNE (Peptidyl-prolyl cis-trans isomerase D OS=Cryptococcus neoformans GN=CPR6 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 7.908e-41
Identity = 87/165 (52.73%), Postives = 106/165 (64.24%), Query Frame = 3
Query:  117 YFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 611
            YFD+ IA +PAGR+   LF   VPKTA NF+ LC G+K   ++G  L Y GS+FHR I  FMLQ            ESIYGEKF DENF+LKH  P LLSMANAGP TNGSQFFITTV T  LDG+HVVFG+V+    +V ++E     +  P   V ++ +G L
Sbjct:    7 YFDITIANEPAGRLTFELFDDVVPKTANNFKHLCIGDK-TNEAGVKLAYAGSSFHRCIKGFMLQGGDFTRGDGTGGESIYGEKFEDENFELKHDKPMLLSMANAGPGTNGSQFFITTVPTPHLDGKHVVFGRVIYNRSLVRRIENIPTTSDRPDQAVTISSAGVL 170          
BLAST of CN189109 vs. ExPASy Swiss-Prot
Match: PPIH_SCHPO (Peptidyl-prolyl cis-trans isomerase cyp3 OS=Schizosaccharomyces pombe GN=cyp3 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.033e-40
Identity = 87/168 (51.79%), Postives = 110/168 (65.48%), Query Frame = 3
Query:  114 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEK-FPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEG-RQNGTPKSKVVVADSGEL 611
            V+ D+ I G+  GRI + LF   VPKTAENFR  CTGE  +G + KP+ YK STFHRII  FM+Q             +I+  + FPDENF LKH  PGLLSMANAG D+NG QFFITTV   +LDG+HVVFG+V+ G D+V ++E+     N  PKS V + + GE+
Sbjct:    7 VFMDIAIDGRLLGRIKIRLFSSIVPKTAENFRQFCTGET-LGVNQKPIGYKNSTFHRIIQGFMIQGGDFVSGDGTGSATIFNSRTFPDENFTLKHDRPGLLSMANAGKDSNGCQFFITTVPCDFLDGKHVVFGEVIEGYDIVKEIESTPVGANSRPKSNVAIVECGEM 173          
BLAST of CN189109 vs. ExPASy Swiss-Prot
Match: PPIA_SCHMA (Peptidyl-prolyl cis-trans isomerase OS=Schistosoma mansoni PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.033e-40
Identity = 88/166 (53.01%), Postives = 105/166 (63.25%), Query Frame = 3
Query:  111 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 608
            K +FD++   +  GRI+  LF   VP T  NFR LCT +   G       YKGS FHRIIP FM Q            +SIYG KF DENF  KH    L SMANAGP+TNGSQFFITTV  SWLDG+HVVFGKV+SG+DVV K+E+ G  +G P  K+++ D GE
Sbjct:    4 KAFFDIKAGDERLGRIIFELFND-VPDTTRNFRELCTHKNNFG-------YKGSVFHRIIPGFMCQGGDFTNGDGTGGKSIYGNKFKDENFNHKHEAFSL-SMANAGPNTNGSQFFITTVPCSWLDGKHVVFGKVVSGIDVVKKMESLGSTSGKPSKKIIIEDCGE 160          
BLAST of CN189109 vs. ExPASy Swiss-Prot
Match: PPIH_MOUSE (Peptidyl-prolyl cis-trans isomerase H OS=Mus musculus GN=Ppih PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.762e-40
Identity = 82/153 (53.59%), Postives = 99/153 (64.71%), Query Frame = 3
Query:   90 NLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE 548
            N   +   V+FDV I G+  GR+ + LF   VPKTAENFR  CTGE    K G P+ YKGSTFHR+I  FM+Q             SIY   F DENFKL+H+ PGLLSMAN+GP TNG QFFIT     WLDG+HVVFGK++ G+ V+ K+E
Sbjct:    5 NSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGE--FRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIE 155          
BLAST of CN189109 vs. ExPASy Swiss-Prot
Match: PPIH_EMENI (Peptidyl-prolyl cis-trans isomerase H OS=Emericella nidulans GN=cyp3 PE=3 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 1.762e-40
Identity = 83/167 (49.70%), Postives = 106/167 (63.47%), Query Frame = 3
Query:  114 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGE-KFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 611
            V+FDV + G+P GR+ + LF    P+TAENFR  CTGE    + G+P  YKGS FHR+I  FM+Q             +IYG  KF DENF L+H  PGLLSMAN+GP+TNG QFFITT  T +L+G+HVVFG+V+ GMD+V  +E        P   VV+   GE+
Sbjct:   18 VFFDVALGGEPLGRLKLELFADVTPRTAENFRQFCTGESK-NQQGRPQGYKGSKFHRVIKDFMIQGGDFVNGDGTGSCTIYGTPKFSDENFTLRHDRPGLLSMANSGPNTNGCQFFITTTATPFLNGKHVVFGQVIDGMDIVRMIENTRTTRDKPNQDVVIIQCGEM 183          
BLAST of CN189109 vs. ExPASy Swiss-Prot
Match: CYPD_YEAST (Peptidyl-prolyl cis-trans isomerase D OS=Saccharomyces cerevisiae GN=CPR5 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.762e-40
Identity = 90/185 (48.65%), Postives = 115/185 (62.16%), Query Frame = 3
Query:   60 SSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVVVADSGEL 611
            ++I AK+      EIT+KVYFD+    K  GRIVMGL+G   P+T ENF  L      I +  K + Y  S FHR+IP+FM+Q            +SI+G  F DENF +KH  PG LSMAN G +TNGSQFFITTV   WLDG+HVVFG+VL GMDVV+ +E  +      P  +V++ +SGEL
Sbjct:   18 TAIFAKEDTAEDPEITHKVYFDINHGDKQIGRIVMGLYGLTTPQTVENFYQLT-----ISRDPK-MGYLNSIFHRVIPNFMIQGGDFTHRSGIGGKSIFGNTFKDENFDVKHDKPGRLSMANRGKNTNGSQFFITTVPCPWLDGKHVVFGEVLDGMDVVHYIENVKTDSRNMPVKEVIIVESGEL 196          
BLAST of CN189109 vs. ExPASy Swiss-Prot
Match: PPID_YEAST (Peptidyl-prolyl cis-trans isomerase CPR6 OS=Saccharomyces cerevisiae GN=CPR6 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.301e-40
Identity = 89/171 (52.05%), Postives = 106/171 (61.99%), Query Frame = 3
Query:  111 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGK--PLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAE--GRQNGTPKSKVVVADSGEL 611
            K +FD+ I GKP GRIV  L+   VPKTAENF  LC G  G+ K+    PL YKGS FHR+I  FM Q            ESIY EKF DENF +KH  P LLSMANAGP+TNGSQ FIT V T  LDG+HVVFG+V+ G  +V  +E +   ++N  P   V + D G L
Sbjct:    5 KTFFDISIGGKPQGRIVFELYNDIVPKTAENFLKLCEGNAGMAKTKPDVPLSYKGSIFHRVIKDFMCQFGDFTNFNGTGGESIYDEKFEDENFTVKHDKPFLLSMANAGPNTNGSQAFITCVPTPHLDGKHVVFGEVIQGKRIVRLIENQQCDQENNKPLRDVKIDDCGVL 175          
BLAST of CN189109 vs. ExPASy Swiss-Prot
Match: CYPH_UROFA (Peptidyl-prolyl cis-trans isomerase OS=Uromyces fabae GN=PIG28 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.301e-40
Identity = 87/166 (52.41%), Postives = 102/166 (61.45%), Query Frame = 3
Query:  117 YFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYK-VEAEGRQNGTPKSKVVVADSGEL 611
            YFDV   GKP GRIV  L+   VP+T  NFR LC    G G       +K S FHR+IP FM+Q            ESIYG+KF DENF+ KH   G+LSMANAGP+TNGSQFFIT   T WLDG+HVVFGKV+ G D V K +E  G Q+G   S + + D G L
Sbjct:    5 YFDVSSNGKPLGRIVFELYDDVVPRTTNNFRQLCLNPPGKG-------FKHSIFHRVIPDFMIQGGDFTNGNGTGGESIYGKKFEDENFQKKHVERGMLSMANAGPNTNGSQFFITVTKTPWLDGKHVVFGKVIEGYDQVVKAMEKTGSQSGKTSSVLKIEDCGTL 163          
BLAST of CN189109 vs. ExPASy Swiss-Prot
Match: CYPB_YEAST (Peptidyl-prolyl cis-trans isomerase B OS=Saccharomyces cerevisiae GN=CPR2 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.005e-40
Identity = 95/196 (48.47%), Postives = 120/196 (61.22%), Query Frame = 3
Query:   33 WAIVLLAT--FSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTV-TTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQ-NGTPKSKVVVADSGE 608
            W ++ L+    +S   +  DQ+ + IT KV+FD+E   +  GRIV+GL+GK  PKTA+NF  L T      K G    + GSTFHR+IP+FM+Q            +SIYG+ FPDENF LKH   G LSMAN G DTNGSQFFITT    SWLDG+HVVFG+V+ GMDVV  ++   R  N  P   V +A  GE
Sbjct:    9 WLLLFLSVNVIASDVGELIDQDDEVITQKVFFDIEHGEEKVGRIVIGLYGKVCPKTAKNFYKLSTTTNS--KKG----FIGSTFHRVIPNFMVQGGDFTDGTGVGGKSIYGDTFPDENFTLKHDRKGRLSMANRGKDTNGSQFFITTTEEASWLDGKHVVFGQVVDGMDVVNYIQHVSRDANDKPLEAVKIAKCGE 198          
BLAST of CN189109 vs. ExPASy Swiss-Prot
Match: CYP11_CAEEL (Peptidyl-prolyl cis-trans isomerase 11 OS=Caenorhabditis elegans GN=cyn-11 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 8.744e-40
Identity = 87/167 (52.10%), Postives = 101/167 (60.48%), Query Frame = 3
Query:  114 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVVVADSGEL 611
            V+ +V   G P G IV+ LF    P+TAENFR  CTGE    K G P  YK  TFHR+I  FM+Q             SIYG KF DENF+LKH GPG+LSMANAG DTNG QFFIT   T +LD +HVVFG+VL GM  V K+E      N  PK  +VV   G+L
Sbjct:   19 VFLEVTAGGAPIGTIVIELFADVTPRTAENFRQFCTGE--YKKDGVPNGYKNCTFHRVIKDFMIQGGDFCNGDGTGLMSIYGSKFRDENFELKHIGPGMLSMANAGSDTNGCQFFITCAKTDFLDNKHVVFGRVLDGMLTVRKIENVPTGANNKPKLPIVVVQCGQL 183          
The following BLAST results are available for this feature:
BLAST of CN189109 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
PPID_CRYNE7.908e-4152.73Peptidyl-prolyl cis-trans isomerase D OS=Cryptococ... [more]
PPIH_SCHPO1.033e-4051.79Peptidyl-prolyl cis-trans isomerase cyp3 OS=Schizo... [more]
PPIA_SCHMA1.033e-4053.01Peptidyl-prolyl cis-trans isomerase OS=Schistosoma... [more]
PPIH_MOUSE1.762e-4053.59Peptidyl-prolyl cis-trans isomerase H OS=Mus muscu... [more]
PPIH_EMENI1.762e-4049.70Peptidyl-prolyl cis-trans isomerase H OS=Emericell... [more]
CYPD_YEAST1.762e-4048.65Peptidyl-prolyl cis-trans isomerase D OS=Saccharom... [more]
PPID_YEAST2.301e-4052.05Peptidyl-prolyl cis-trans isomerase CPR6 OS=Saccha... [more]
CYPH_UROFA2.301e-4052.41Peptidyl-prolyl cis-trans isomerase OS=Uromyces fa... [more]
CYPB_YEAST3.005e-4048.47Peptidyl-prolyl cis-trans isomerase B OS=Saccharom... [more]
CYP11_CAEEL8.744e-4052.10Peptidyl-prolyl cis-trans isomerase 11 OS=Caenorha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001F09_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189109 ID=CN189109; Name=CN189109; organism=Citrus sinensis; type=EST; length=613bp
GCTTCGACAAATTTCTTCCACTCACGATGCTATGGGCTATTGTCCTGTTG
GCCACTTTCTCTTCAATTCAGGCGAAGAAATCGGATCAGAATTTGAAAGA
AATCACAAACAAAGTTTACTTTGACGTTGAGATTGCTGGAAAACCTGCCG
GACGTATTGTAATGGGTCTCTTTGGAAAGGCAGTCCCTAAAACTGCAGAA
AATTTCCGAGCTTTGTGCACAGGGGAGAAAGGGATTGGCAAGAGCGGGAA
GCCACTCCACTACAAGGGAAGTACGTTCCATAGGATTATTCCCAGCTTTA
TGCTTCAAGGAGGTGATTTCACTCTTGGTGATGGAAGAGGTGGAGAGTCA
ATTTATGGAGAGAAGTTCCCTGACGAAAATTTCAAACTGAAGCACACTGG
CCCAGGGCTTTTGTCAATGGCAAATGCTGGTCCAGACACCAATGGTTCAC
AATTCTTCATTACAACTGTGACAACTAGCTGGTTGGATGGCAGGCATGTT
GTATTTGGAAAGGTGCTATCGGGGATGGATGTAGTTTACAAGGTTGAAGC
TGAAGGGAGGCAGAATGGCACTCCGAAGAGCAAAGTCGTCGTTGCGGACA
GCGGTGAACTTCC
back to top