CN182560

Overview
NameCN182560
Unique NameCN182560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length531
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: PPIL4_MOUSE (Peptidyl-prolyl cis-trans isomerase-like 4 OS=Mus musculus GN=Ppil4 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.673e-11
Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = -1
Query:  292 GDFTAGNGTGGESIYGSKFADE-NFVK-------KHTGPGILSMANAGPGTNGSQFFVCTAKT-EWLDGKHVVFGQVVEGMDVVKAIEK 531
            GD T G G GGESI+G  + D+ +F +       KH   G +SM N G   +GSQF + T +  ++LDG H VFG+V EGMD+VK I +
Sbjct:   54 GDPT-GTGRGGESIFGQLYGDQASFFEAEKVPRIKHKKKGTVSMVNNGSDQHGSQFLITTGENLDYLDGVHTVFGEVTEGMDIVKKINE 141          
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: PPIL4_HUMAN (Peptidyl-prolyl cis-trans isomerase-like 4 OS=Homo sapiens GN=PPIL4 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.184e-11
Identity = 39/89 (43.82%), Postives = 54/89 (60.67%), Query Frame = -1
Query:  292 GDFTAGNGTGGESIYGSKFADE-NFVK-------KHTGPGILSMANAGPGTNGSQFFVCTAKT-EWLDGKHVVFGQVVEGMDVVKAIEK 531
            GD T G G GGESI+G  + D+ +F +       KH   G +SM N G   +GSQF + T +  ++LDG H VFG+V EGMD++K I +
Sbjct:   54 GDPT-GTGRGGESIFGQLYGDQASFFEAEKVPRIKHKKKGTVSMVNNGSDQHGSQFLITTGENLDYLDGVHTVFGEVTEGMDIIKKINE 141          
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: PPIL2_USTMA (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Ustilago maydis GN=CYP8 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.853e-11
Identity = 44/97 (45.36%), Postives = 56/97 (57.73%), Query Frame = -1
Query:  256 GDFTAGNGTGGESIYGSKFADE---NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMD--VVKAIEKVGSSSGRTNKPV 531
            GD T G G GG SI+ S F DE       KH   G+LSMAN G  TN SQFF+       LDGKH VFG++V+G     +  +E+V S  G T++P+
Sbjct:  346 GDPT-GTGRGGSSIWNSNFRDEFNEPGAFKHDTRGVLSMANKGKDTNASQFFITYRGVPHLDGKHTVFGRLVDGDKDATLTKMEQVPSEQG-TDRPL 440          
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: CYPH_BETVE (Peptidyl-prolyl cis-trans isomerase (Fragments) OS=Betula verrucosa PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.853e-11
Identity = 34/44 (77.27%), Postives = 35/44 (79.55%), Query Frame = -1
Query:  397 DFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNG 528
            DFTAGNGTGGESIYG+K  D       TGPGILSMANAGPGTNG
Sbjct:    1 DFTAGNGTGGESIYGAK--DXXXXXXXTGPGILSMANAGPGTNG 42          
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: PPIL3_USTMA (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Ustilago maydis GN=CYP10 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.726e-11
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = -1
Query:  313 GDFTAGNGTGGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMD 531
            GD T G G GG+SI+G  FADE     K    GI++ ANAGP TN SQFF+  AK   LDGK+ + G+V++G +
Sbjct:   54 GDPT-GTGKGGQSIWGKPFADEIRSSLKFDRRGIVACANAGPDTNKSQFFITYAKQPHLDGKYTIIGKVIDGAE 126          
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: SDC10_MOUSE (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Mus musculus GN=Sdccag10 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.301e-11
Identity = 35/69 (50.72%), Postives = 46/69 (66.67%), Query Frame = -1
Query:  328 GDFTAGNGTGGESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQV 531
            GD T G GTGGESIYG+ F DE   + +    G+++MANAGP  NGSQFF    + + L+ KH +FG+V
Sbjct:   66 GDPT-GTGTGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKV 133          
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: CYP7_YEAST (Peptidyl-prolyl cis-trans isomerase CYP7 OS=Saccharomyces cerevisiae GN=CPR7 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.301e-11
Identity = 46/107 (42.99%), Postives = 53/107 (49.53%), Query Frame = -1
Query:  238 GTGGESIYGSK--------------FADENFVKKHTGPGILSMANAG-PGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVG-SSSGRTNKPVVIADCG 510
            G GG SIY  K              F DEN + +   P  L MAN G P TN SQFF+ T     L+GKH +FGQVV G  VV+ IE     S G     V I+DCG
Sbjct:   90 GKGGCSIYADKEEVKTDDESFCYGNFEDEN-LGEFVEPFTLGMANLGSPNTNNSQFFITTYAAPHLNGKHSIFGQVVHGKSVVRTIENCRVDSDGVPESDVRISDCG 195          
The following BLAST results are available for this feature:
BLAST of CN182560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
PPIL4_MOUSE1.673e-1144.94Peptidyl-prolyl cis-trans isomerase-like 4 OS=Mus ... [more]
PPIL4_HUMAN2.184e-1143.82Peptidyl-prolyl cis-trans isomerase-like 4 OS=Homo... [more]
PPIL2_USTMA2.853e-1145.36Peptidyl-prolyl cis-trans isomerase-like 2 OS=Usti... [more]
CYPH_BETVE2.853e-1177.27Peptidyl-prolyl cis-trans isomerase (Fragments) OS... [more]
PPIL3_USTMA3.726e-1150.00Peptidyl-prolyl cis-trans isomerase-like 3 OS=Usti... [more]
SDC10_MOUSE8.301e-1150.72Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Mu... [more]
CYP7_YEAST8.301e-1142.99Peptidyl-prolyl cis-trans isomerase CYP7 OS=Saccha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002K16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182560 ID=CN182560; Name=CN182560; organism=Citrus sinensis; type=EST; length=531bp
GAGGCCTATCTTATTTAAAAAGGCAGCTCATAGAAAGACATAAAAAACAG
TTCATCAAGAACCACCACCGGAGACCCGATCCAACCCGAACAAGTAACAT
AGCAGGAAAATTAGATAAAGATTAAAAGTCCTACAGACACGGCCACATAA
TAATAGATAACATAATCACCATCACGATCGCGATCAGACGGCTCGTGATG
ATGGCGATCATTATCATGATCAAATCTAAGACAATTGACCGCAATCAGCG
ATCACGACGGGCTTGTTGGTCCTTCCGGAGCTGGACCCCACTTTCTCGAT
GGCCTTGACGACGTCCATTCCTTCGACGACTTGACCGAACACAACGTGCT
TCCCATCGAGCCACTCGGTCTTGGCCGTACAGACGAAGAACTGAGATCCG
TTGGTTCCGGGTCCGGCATTCGCCATGGAGAGGATTCCGGGGCCGGTGTG
CTTCTTCACGAAGTTCTCATCGGCGAATTTTGAGCCGTAGATTGATTCGC
CTCCGGTTCCGTTTCCGGCGGTGAAGTCTCC
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