CN182560

Overview
NameCN182560
Unique NameCN182560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length531
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: PPIA_HEMPU (Peptidyl-prolyl cis-trans isomerase OS=Hemicentrotus pulcherrimus PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 9.410e-39
Identity = 72/100 (72.00%), Postives = 82/100 (82.00%), Query Frame = -1
Query:  232 GDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 531
            GDFT  NGTGG+SIYG KFADENF  KHT PGILSMANAG  TNGSQFF+CTA T WLDGKHVVFG V +G+D++K +E  GS SG+T+K + IADCGQL
Sbjct:   65 GDFTRHNGTGGKSIYGEKFADENFTLKHTQPGILSMANAGVNTNGSQFFICTAVTSWLDGKHVVFGAVTQGLDIIKKVESYGSDSGKTSKKITIADCGQL 164          
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: CYP1_CAEEL (Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhabditis elegans GN=cyn-1 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.738e-38
Identity = 75/100 (75.00%), Postives = 80/100 (80.00%), Query Frame = -1
Query:  232 GDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 531
            GDFT  NGTGGESIYG+KF DENF  KHTGPG LSMANAGP TNGSQFF+CT  T WLDG HVVFGQV +GM VVK IEK+GS SG   K V IADCG+L
Sbjct:   90 GDFTRHNGTGGESIYGNKFKDENFDLKHTGPGCLSMANAGPNTNGSQFFICTVDTPWLDGGHVVFGQVTDGMSVVKKIEKMGSRSGAPAKTVTIADCGEL 189          
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: PPIA_DROME (Peptidyl-prolyl cis-trans isomerase OS=Drosophila melanogaster GN=Cyp1 PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 5.163e-37
Identity = 71/100 (71.00%), Postives = 82/100 (82.00%), Query Frame = -1
Query:  232 GDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 531
            GDFT  NGTGG+SIYG+KF DENF  KHTG GILSMANAG  TNGSQFF+CT KT WLD KHVVFG+VVEG+DVVK IE  GS SG+T+K +++A+ G L
Sbjct:  128 GDFTNHNGTGGKSIYGNKFPDENFELKHTGSGILSMANAGANTNGSQFFICTVKTAWLDNKHVVFGEVVEGLDVVKKIESYGSQSGKTSKKIIVANSGSL 227          
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: PPIA_ECHGR (Peptidyl-prolyl cis-trans isomerase OS=Echinococcus granulosus GN=CYP-1 PE=2 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.502e-36
Identity = 73/100 (73.00%), Postives = 83/100 (83.00%), Query Frame = -1
Query:  232 GDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 531
            GDFTAGNGTGG+SIYGSKF DENF  KH+ P +LSMANAG  TNGSQFF+ TA T WLDGKHVVFG+V  G DVVK +E VGSSSG+T++ V+I DCGQL
Sbjct:   63 GDFTAGNGTGGKSIYGSKFEDENFNHKHSKPMMLSMANAGKNTNGSQFFITTAVTSWLDGKHVVFGEVESGEDVVKDMEAVGSSSGKTSQEVLITDCGQL 162          
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: CP20B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic OS=Arabidopsis thaliana GN=CYP20-2 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.563e-36
Identity = 71/101 (70.30%), Postives = 80/101 (79.21%), Query Frame = -1
Query:  232 GDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQL 531
            GDF  GNGTGG+S+YG  F DENF   H GPG+LSMANAGP TNGSQFF+CT KT WLDG+HVVFGQV+EGM+VVK IE+  +  G R  K VVIADCGQL
Sbjct:  154 GDFEKGNGTGGKSVYGRTFKDENFKLSHVGPGVLSMANAGPNTNGSQFFICTIKTSWLDGRHVVFGQVIEGMEVVKLIEEQETDRGDRPRKKVVIADCGQL 254          
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: PPIE_HUMAN (Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.709e-36
Identity = 67/99 (67.68%), Postives = 81/99 (81.82%), Query Frame = -1
Query:  235 GDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 531
            GDFT  NGTGG+SIYG KF DENF+ KHTGPG+LSMAN+GP TNGSQFF+   KT+WLDGKHVVFG+V EG+DV++ IE  GS  G+  + V+IADCG+
Sbjct:  201 GDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 299          
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: PPIF_BOVIN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Bos taurus GN=PPIF PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 7.456e-36
Identity = 69/90 (76.67%), Postives = 76/90 (84.44%), Query Frame = -1
Query:  262 GDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNK 531
            GDFT  NGTGG+SIYGS+F DENF  KH GPG+LSMANAGP TNGSQFF+CT KT+WLDGKHVVFG V EGMDVVK IE  GS SG+T+K
Sbjct:  108 GDFTNHNGTGGKSIYGSRFPDENFKLKHEGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSK 197          
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: PPIE_PONAB (Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 7.456e-36
Identity = 67/99 (67.68%), Postives = 81/99 (81.82%), Query Frame = -1
Query:  235 GDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 531
            GDFT  NGTGG+SIYG KF DENF+ KHTGPG+LSMAN+GP TNGSQFF+   KT+WLDGKHVVFG+V EG+DV++ IE  GS  G+  + V+IADCG+
Sbjct:  201 GDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEARGSKDGKPKQKVIIADCGE 299          
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: PPIA_CANAL (Peptidyl-prolyl cis-trans isomerase OS=Candida albicans GN=CYP1 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 7.456e-36
Identity = 69/100 (69.00%), Postives = 81/100 (81.00%), Query Frame = -1
Query:  232 GDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 531
            GDFT  NGTGG+SIYG+KFADENFVK+H  PG+LSMANAGP TNGSQFF+ T    WLDGKHVVFG+V +G+D+VK IE  GS SG T+K +VI + GQL
Sbjct:   63 GDFTNFNGTGGKSIYGTKFADENFVKRHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVTDGLDIVKKIESFGSGSGATSKKIVIEESGQL 162          
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: CYPH_SCHPO (Peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe GN=ppi1 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 7.456e-36
Identity = 69/98 (70.41%), Postives = 77/98 (78.57%), Query Frame = -1
Query:  238 GDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCG 531
            GDFT GNGTGG+SIYG KF DENF  KH  PG+LSMANAGP TNGSQFF+ T  T WLDGKHVVFG+V EGMDVVK +E +GS+SG T   +VI  CG
Sbjct:   63 GDFTRGNGTGGKSIYGEKFPDENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKHVVFGEVTEGMDVVKKVESLGSNSGATRARIVIDKCG 160          
The following BLAST results are available for this feature:
BLAST of CN182560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
PPIA_HEMPU9.410e-3972.00Peptidyl-prolyl cis-trans isomerase OS=Hemicentrot... [more]
CYP1_CAEEL2.738e-3875.00Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhab... [more]
PPIA_DROME5.163e-3771.00Peptidyl-prolyl cis-trans isomerase OS=Drosophila ... [more]
PPIA_ECHGR1.502e-3673.00Peptidyl-prolyl cis-trans isomerase OS=Echinococcu... [more]
CP20B_ARATH2.563e-3670.30Peptidyl-prolyl cis-trans isomerase CYP20-2, chlor... [more]
PPIE_HUMAN5.709e-3667.68Peptidyl-prolyl cis-trans isomerase E OS=Homo sapi... [more]
PPIF_BOVIN7.456e-3676.67Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIE_PONAB7.456e-3667.68Peptidyl-prolyl cis-trans isomerase E OS=Pongo abe... [more]
PPIA_CANAL7.456e-3669.00Peptidyl-prolyl cis-trans isomerase OS=Candida alb... [more]
CYPH_SCHPO7.456e-3670.41Peptidyl-prolyl cis-trans isomerase OS=Schizosacch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002K16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182560 ID=CN182560; Name=CN182560; organism=Citrus sinensis; type=EST; length=531bp
GAGGCCTATCTTATTTAAAAAGGCAGCTCATAGAAAGACATAAAAAACAG
TTCATCAAGAACCACCACCGGAGACCCGATCCAACCCGAACAAGTAACAT
AGCAGGAAAATTAGATAAAGATTAAAAGTCCTACAGACACGGCCACATAA
TAATAGATAACATAATCACCATCACGATCGCGATCAGACGGCTCGTGATG
ATGGCGATCATTATCATGATCAAATCTAAGACAATTGACCGCAATCAGCG
ATCACGACGGGCTTGTTGGTCCTTCCGGAGCTGGACCCCACTTTCTCGAT
GGCCTTGACGACGTCCATTCCTTCGACGACTTGACCGAACACAACGTGCT
TCCCATCGAGCCACTCGGTCTTGGCCGTACAGACGAAGAACTGAGATCCG
TTGGTTCCGGGTCCGGCATTCGCCATGGAGAGGATTCCGGGGCCGGTGTG
CTTCTTCACGAAGTTCTCATCGGCGAATTTTGAGCCGTAGATTGATTCGC
CTCCGGTTCCGTTTCCGGCGGTGAAGTCTCC
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