CN182560

Overview
NameCN182560
Unique NameCN182560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length531
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: PPIB_ORPSP (Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyces sp. (strain PC-2) GN=CYPB PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 8.243e-35
Identity = 70/101 (69.31%), Postives = 81/101 (80.20%), Query Frame = -1
Query:  232 GDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQL 531
            GDFT G+GTGG+SIYG +FADENF  +HTGPGILSMANAG  TNGSQFF+ T  T WLDG+HVVFG+V+EGMDVV AIE   +  G R   PV+IADCG+L
Sbjct:   91 GDFTRGDGTGGKSIYGERFADENFKLRHTGPGILSMANAGRDTNGSQFFITTVTTSWLDGRHVVFGKVIEGMDVVTAIETTKTLPGDRPATPVIIADCGEL 191          
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: CYPH_YEAST (Peptidyl-prolyl cis-trans isomerase OS=Saccharomyces cerevisiae GN=CPR1 PE=1 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 8.243e-35
Identity = 67/100 (67.00%), Postives = 78/100 (78.00%), Query Frame = -1
Query:  232 GDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 531
            GDFTAGNGTGG+SIYG KF DENF K H  PG+LSMANAGP TNGSQFF+ T    WLDGKHVVFG+VV+G D+VK +E +GS SG T   +V+A  G+L
Sbjct:   63 GDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVDGYDIVKKVESLGSPSGATKARIVVAKSGEL 162          
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: CYPH_NEUCR (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Neurospora crassa GN=NCU00726 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.836e-34
Identity = 73/104 (70.19%), Postives = 79/104 (75.96%), Query Frame = -1
Query:  232 GDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVV--EGMDVVKAIEKVGSSSG--RTNKPVVIADCGQL 531
            GDFT GNGTGG+SIYG KFADENF KKH  PG+LSMANAGP TNGSQFFV T  T WLDG+HVVFG+V   E M VVKA+E  GSSSG  R +K   I DCG L
Sbjct:  120 GDFTRGNGTGGKSIYGEKFADENFAKKHVRPGLLSMANAGPNTNGSQFFVTTVPTSWLDGRHVVFGEVADDESMKVVKALEATGSSSGAIRYSKKPTIVDCGAL 223          
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: CYPX_USEUD (Peptidyl-prolyl cis-trans isomerase OS=Unspecified eudicot DB-1992 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.091e-34
Identity = 73/103 (70.87%), Postives = 82/103 (79.61%), Query Frame = -1
Query:  232 GDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQL 531
            GDFT GNG GGESIYG+KFADENF+ KHT PG+LSMANAGPGTNGSQFF+ T  T  LDGKHVVFG+VVEGMDVV+ IE   + + R +KP   V IA CGQL
Sbjct:   69 GDFTLGNGRGGESIYGAKFADENFIHKHTTPGLLSMANAGPGTNGSQFFITTVATPHLDGKHVVFGKVVEGMDVVRKIE--ATQTDRGDKPLSEVKIAKCGQL 169          
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: CP20A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.091e-34
Identity = 69/100 (69.00%), Postives = 75/100 (75.00%), Query Frame = -1
Query:  232 GDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 531
            GDFT GNG GGESIYG KFADENF  KHTGPG LSMANAG  TNGSQFF+ T  T WLDG+HVVFG+VV GMDVV  +E  G+ SG     VVI D G+L
Sbjct:  103 GDFTHGNGMGGESIYGEKFADENFKLKHTGPGFLSMANAGQDTNGSQFFITTVTTSWLDGRHVVFGKVVTGMDVVYKVEAEGNQSGTPKSKVVIVDSGEL 202          
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: PPIB_DICDI (Peptidyl-prolyl cis-trans isomerase B OS=Dictyostelium discoideum GN=cypB PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.343e-34
Identity = 65/100 (65.00%), Postives = 79/100 (79.00%), Query Frame = -1
Query:  232 GDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 531
            GDFT G+GTGGESIYG KF DENF  KH+ PG+LSMANAGP TNGSQFF+ T  T WLDG+H VFG+V+EGMD+VK +E +GS SG  +K   I++ G+L
Sbjct:   98 GDFTRGDGTGGESIYGKKFNDENFKIKHSKPGLLSMANAGPNTNGSQFFITTVVTSWLDGRHTVFGEVIEGMDIVKLLESIGSQSGTPSKIAKISNSGEL 197          
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: PPIB_CRYNE (Peptidyl-prolyl cis-trans isomerase B OS=Cryptococcus neoformans GN=CPR2 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.343e-34
Identity = 69/101 (68.32%), Postives = 81/101 (80.20%), Query Frame = -1
Query:  232 GDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQL 531
            GDFT G+GTGG+SIYGSKF DENF  KHTGPG+LSMANAG  TNGSQFF+CT KT WLD +HVVFG V+EGMDVV A+E V +S G +  +P+ IA  G+L
Sbjct:  112 GDFTKGDGTGGKSIYGSKFPDENFKLKHTGPGVLSMANAGRDTNGSQFFICTVKTAWLDNRHVVFGHVLEGMDVVYAMENVKTSRGDKPVEPITIAASGEL 212          
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: PPID_NEUCR (41 kDa peptidyl-prolyl cis-trans isomerase OS=Neurospora crassa GN=cyp-41 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.523e-33
Identity = 68/101 (67.33%), Postives = 77/101 (76.24%), Query Frame = -1
Query:  229 GDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 531
            GDFTAGNGTGGESIYG+KF DENF  KH  P +LSMANAGPGTNGSQFFV T  T  LDGKHVVFG+V+ G  VV+ IE + +   +  K  VIADCG+LS
Sbjct:   80 GDFTAGNGTGGESIYGAKFEDENFQLKHDRPFLLSMANAGPGTNGSQFFVTTVPTPHLDGKHVVFGEVLSGKSVVRQIENLKTQGDKPTKDAVIADCGELS 180          
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: PPIA2_RHIOR (Peptidyl-prolyl cis-trans isomerase A2 OS=Rhizopus oryzae GN=cyp1 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 7.716e-33
Identity = 65/100 (65.00%), Postives = 76/100 (76.00%), Query Frame = -1
Query:  232 GDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 531
            GDFT G+GTGG+SIYG KFADENF  KH+ PG+LSMANAGP TNGSQFF+ T    WLDG HVVFG+V + M++V  IE +GS+SG     VVI DCG L
Sbjct:   62 GDFTRGDGTGGKSIYGEKFADENFKLKHSEPGLLSMANAGPNTNGSQFFITTVPCSWLDGAHVVFGKVTKNMELVSKIESLGSASGAVKAKVVIEDCGVL 161          
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: CYPC_YEAST (Peptidyl-prolyl cis-trans isomerase C, mitochondrial OS=Saccharomyces cerevisiae GN=CPR3 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.316e-32
Identity = 65/100 (65.00%), Postives = 77/100 (77.00%), Query Frame = -1
Query:  232 GDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 531
            GD    NG GG+SIYGSKFADENFVKKH   G+LSMANAGP TNGSQFF+ T    WLDGKHVVFG+V +GMD+VKAIE  G++SG+    +VI + G+L
Sbjct:   83 GDTDLTNGFGGKSIYGSKFADENFVKKHDKAGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVTKGMDIVKAIESYGTASGKPRAEIVIEEAGEL 182          
The following BLAST results are available for this feature:
BLAST of CN182560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
PPIB_ORPSP8.243e-3569.31Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyc... [more]
CYPH_YEAST8.243e-3567.00Peptidyl-prolyl cis-trans isomerase OS=Saccharomyc... [more]
CYPH_NEUCR1.836e-3470.19Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
CYPX_USEUD4.091e-3470.87Peptidyl-prolyl cis-trans isomerase OS=Unspecified... [more]
CP20A_ARATH4.091e-3469.00Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Ara... [more]
PPIB_DICDI5.343e-3465.00Peptidyl-prolyl cis-trans isomerase B OS=Dictyoste... [more]
PPIB_CRYNE5.343e-3468.32Peptidyl-prolyl cis-trans isomerase B OS=Cryptococ... [more]
PPID_NEUCR4.523e-3367.3341 kDa peptidyl-prolyl cis-trans isomerase OS=Neur... [more]
PPIA2_RHIOR7.716e-3365.00Peptidyl-prolyl cis-trans isomerase A2 OS=Rhizopus... [more]
CYPC_YEAST1.316e-3265.00Peptidyl-prolyl cis-trans isomerase C, mitochondri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002K16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182560 ID=CN182560; Name=CN182560; organism=Citrus sinensis; type=EST; length=531bp
GAGGCCTATCTTATTTAAAAAGGCAGCTCATAGAAAGACATAAAAAACAG
TTCATCAAGAACCACCACCGGAGACCCGATCCAACCCGAACAAGTAACAT
AGCAGGAAAATTAGATAAAGATTAAAAGTCCTACAGACACGGCCACATAA
TAATAGATAACATAATCACCATCACGATCGCGATCAGACGGCTCGTGATG
ATGGCGATCATTATCATGATCAAATCTAAGACAATTGACCGCAATCAGCG
ATCACGACGGGCTTGTTGGTCCTTCCGGAGCTGGACCCCACTTTCTCGAT
GGCCTTGACGACGTCCATTCCTTCGACGACTTGACCGAACACAACGTGCT
TCCCATCGAGCCACTCGGTCTTGGCCGTACAGACGAAGAACTGAGATCCG
TTGGTTCCGGGTCCGGCATTCGCCATGGAGAGGATTCCGGGGCCGGTGTG
CTTCTTCACGAAGTTCTCATCGGCGAATTTTGAGCCGTAGATTGATTCGC
CTCCGGTTCCGTTTCCGGCGGTGAAGTCTCC
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