CN182560

Overview
NameCN182560
Unique NameCN182560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length531
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: CYP6_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizopus oryzae GN=cyp6 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.681e-30
Identity = 60/100 (60.00%), Postives = 71/100 (71.00%), Query Frame = -1
Query:  232 GDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 531
            GDFT G+G GGESIYG  F DENF  KH G G+LSMANAGP TNGSQFF+    T WLDG H VFGQ+V+G  V+  +E+ GS SG  +  + I DCG+L
Sbjct:   75 GDFTMGDGRGGESIYGRTFKDENFTLKHKGKGLLSMANAGPNTNGSQFFITFVDTPWLDGNHTVFGQIVDGSKVLDLLEQHGSRSGMPSAKIEITDCGEL 174          
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: PPID_ASPFU (Peptidyl-prolyl cis-trans isomerase D OS=Aspergillus fumigatus GN=cpr6 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 7.984e-30
Identity = 61/101 (60.40%), Postives = 73/101 (72.28%), Query Frame = -1
Query:  229 GDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 531
            GDFT  NGTGGESIYG KF DENF  KH  P +LSMAN+GPGTNGSQFF+ T  T  LDGKHVVFG+V+ G  +V+ IE + + + +    V I DCG+LS
Sbjct:   80 GDFTNFNGTGGESIYGEKFPDENFELKHDRPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSIVRKIENMPTQADKPTTDVTIVDCGELS 180          
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: PPIB_SCHMA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma mansoni GN=CYP PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.779e-29
Identity = 63/101 (62.38%), Postives = 74/101 (73.27%), Query Frame = -1
Query:  232 GDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIE-KVGSSSGRTNKPVVIADCGQL 531
            GDFT  +GTGG SIYG +F DENF  +H G G LSMANAGP TNGSQFF+ T KT WLDGKHVVFG+VVEGM++V+ IE +   S  R  K + IA CG +
Sbjct:   98 GDFTNHDGTGGFSIYGDRFPDENFKLRHVGAGWLSMANAGPDTNGSQFFITTVKTSWLDGKHVVFGKVVEGMNIVRQIESETTDSRDRPVKSIKIASCGHI 198          
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: PPID_GIBZE (Peptidyl-prolyl cis-trans isomerase D OS=Gibberella zeae GN=CPR6 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.323e-29
Identity = 64/102 (62.75%), Postives = 76/102 (74.51%), Query Frame = -1
Query:  229 GDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQLS 531
            GDFTAG+GTGGESIYG+KF DE F  KH  P +LSMANAGP TNGSQFF+ T  T  LDGKHVVFG+V+ G  VV+ IE + + SG R  K  +I DCG+L+
Sbjct:   79 GDFTAGDGTGGESIYGNKFDDEAFPIKHEKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGEVLNGKSVVRQIENLTTQSGDRPAKEALIVDCGELT 180          
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: PPID_SCHPO (40 kDa peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe GN=wis2 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.034e-29
Identity = 61/98 (62.24%), Postives = 71/98 (72.45%), Query Frame = -1
Query:  238 GDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCG 531
            GDFT GNGTGGESIYG KF DENF  KH  P +LSMANAGP TNGSQFF+ T  T  LDGKHVVFG+V++G   V+ IE + + +     PVVI +CG
Sbjct:   68 GDFTRGNGTGGESIYGEKFEDENFELKHDKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGKVIQGKSTVRTIENLETKNDDPVVPVVIEECG 165          
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: PPIB_ARTBE (Peptidyl-prolyl cis-trans isomerase B OS=Arthroderma benhamiae GN=CPR2 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.034e-29
Identity = 63/101 (62.38%), Postives = 74/101 (73.27%), Query Frame = -1
Query:  232 GDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSS-SGRTNKPVVIADCGQL 531
            GDFT G+GTGG+SIYG+KF DENF  +HT  G+LSMANAG  TNGSQFF+ TA T WLDGKHVVFG+V+EG D+V  I+ V      R  K V I  CG+L
Sbjct:   96 GDFTNGDGTGGKSIYGNKFEDENFKLRHTKKGVLSMANAGKDTNGSQFFITTAITAWLDGKHVVFGEVLEGYDIVDKIQVVPKGFQDRPTKDVKIVKCGEL 196          
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: PPIB_YARLI (Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia lipolytica GN=CPR2 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.175e-29
Identity = 63/101 (62.38%), Postives = 73/101 (72.28%), Query Frame = -1
Query:  232 GDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNK-PVVIADCGQL 531
            GDFT G+GTGGESIYG KF DENF  KHT P  LSMANAG  TNGSQFF+ T  T WLDGKHVVFG+V+EG D+V AIE   + +    K  + IAD G++
Sbjct:   93 GDFTRGDGTGGESIYGRKFPDENFQLKHTKPYKLSMANAGRDTNGSQFFITTVVTSWLDGKHVVFGEVLEGQDIVDAIENAPTGARSNPKVDITIADAGEI 193          
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: PPID_MOUSE (40 kDa peptidyl-prolyl cis-trans isomerase OS=Mus musculus GN=Ppid PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 6.759e-29
Identity = 61/100 (61.00%), Postives = 73/100 (73.00%), Query Frame = -1
Query:  232 GDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 531
            GDF+  NGTGGESIYG KF DENF  KH   G+LSMANAGP TNGSQFF+ T  T  LDGKHVVFGQV++G+ V + +E V  +  +  K  VIA+CG+L
Sbjct:   85 GDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARTLENVEVNGEKPAKLCVIAECGEL 184          
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: PPIB_SCHJA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.759e-29
Identity = 63/101 (62.38%), Postives = 74/101 (73.27%), Query Frame = -1
Query:  232 GDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSS-GRTNKPVVIADCGQL 531
            GDFT  +GTGG SIYG +F DENF  KH G G LSMANAGP TNG+QFF+ T +  WLDGKHVVFG+VVEGM VV+ IE + + S  R  K V IA+CG +
Sbjct:   98 GDFTNHDGTGGFSIYGERFPDENFKLKHVGAGWLSMANAGPNTNGAQFFITTTQNPWLDGKHVVFGKVVEGMSVVRQIENMQTDSRDRPVKSVKIANCGHI 198          
BLAST of CN182560 vs. ExPASy Swiss-Prot
Match: PPID_RAT (40 kDa peptidyl-prolyl cis-trans isomerase OS=Rattus norvegicus GN=Ppid PE=1 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 8.828e-29
Identity = 61/100 (61.00%), Postives = 73/100 (73.00%), Query Frame = -1
Query:  232 GDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 531
            GDF+  NGTGGESIYG KF DENF  KH   G+LSMANAGP TNGSQFF+ T  T  LDGKHVVFGQV++G+ V + +E V  +  +  K  VIA+CG+L
Sbjct:   85 GDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARMLENVEVNGEKPAKLCVIAECGEL 184          
The following BLAST results are available for this feature:
BLAST of CN182560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
CYP6_RHIOR4.681e-3060.00Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizop... [more]
PPID_ASPFU7.984e-3060.40Peptidyl-prolyl cis-trans isomerase D OS=Aspergill... [more]
PPIB_SCHMA1.779e-2962.38Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]
PPID_GIBZE2.323e-2962.75Peptidyl-prolyl cis-trans isomerase D OS=Gibberell... [more]
PPID_SCHPO3.034e-2962.2440 kDa peptidyl-prolyl cis-trans isomerase OS=Schi... [more]
PPIB_ARTBE3.034e-2962.38Peptidyl-prolyl cis-trans isomerase B OS=Arthroder... [more]
PPIB_YARLI5.175e-2962.38Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia ... [more]
PPID_MOUSE6.759e-2961.0040 kDa peptidyl-prolyl cis-trans isomerase OS=Mus ... [more]
PPIB_SCHJA6.759e-2962.38Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]
PPID_RAT8.828e-2961.0040 kDa peptidyl-prolyl cis-trans isomerase OS=Ratt... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0002K16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182560 ID=CN182560; Name=CN182560; organism=Citrus sinensis; type=EST; length=531bp
GAGGCCTATCTTATTTAAAAAGGCAGCTCATAGAAAGACATAAAAAACAG
TTCATCAAGAACCACCACCGGAGACCCGATCCAACCCGAACAAGTAACAT
AGCAGGAAAATTAGATAAAGATTAAAAGTCCTACAGACACGGCCACATAA
TAATAGATAACATAATCACCATCACGATCGCGATCAGACGGCTCGTGATG
ATGGCGATCATTATCATGATCAAATCTAAGACAATTGACCGCAATCAGCG
ATCACGACGGGCTTGTTGGTCCTTCCGGAGCTGGACCCCACTTTCTCGAT
GGCCTTGACGACGTCCATTCCTTCGACGACTTGACCGAACACAACGTGCT
TCCCATCGAGCCACTCGGTCTTGGCCGTACAGACGAAGAACTGAGATCCG
TTGGTTCCGGGTCCGGCATTCGCCATGGAGAGGATTCCGGGGCCGGTGTG
CTTCTTCACGAAGTTCTCATCGGCGAATTTTGAGCCGTAGATTGATTCGC
CTCCGGTTCCGTTTCCGGCGGTGAAGTCTCC
back to top