CN182558

Overview
NameCN182558
Unique NameCN182558
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length606
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182558 vs. ExPASy Swiss-Prot
Match: XTH1_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana GN=XTH1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.986e-24
Identity = 49/124 (39.52%), Postives = 77/124 (62.10%), Query Frame = 1
Query:    1 EDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVDGCEVSVNAKFCETQGKRWWDQKAFQDLDAYQYRRLRWVRQKYTIYNYCNDRARFPTPSPECK 372
            +++P+RVFKN+   G+ +P ++PM++  SLWN ++WAT GG  K +WS APF A+++GF+  GC  +     C +    WW+  ++  L   + +    VRQKY  Y+YC+D+ RF  P  ECK
Sbjct:  171 DNIPVRVFKNTTSQGMNYP-SKPMQVVVSLWNGENWATDGGKSKINWSLAPFKANFQGFNNSGCFTNAEKNACGSSA-YWWNTGSYSKLSDSEQKAYTNVRQKYMNYDYCSDKVRFHVPPSECK 292          
BLAST of CN182558 vs. ExPASy Swiss-Prot
Match: XTH3_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana GN=XTH3 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.094e-24
Identity = 53/126 (42.06%), Postives = 78/126 (61.90%), Query Frame = 1
Query:    1 EDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVDGCEV---SVNAKFCETQGKRWWDQKAFQDLDAYQYRRLRWVRQKYTIYNYCNDRARFPTPSPEC 369
            +++PIRV+KN    GV +P ++PM++ +SLWN DDWAT GG  K +WS +PFIA ++ F + GC +   S N   CE+    WW+   +Q L   + +    VR KY  Y+YC DR+++ TP  EC
Sbjct:  168 DNIPIRVYKNEN--GVSYP-SKPMQVEASLWNGDDWATDGGRTKVNWSYSPFIAHFRDFALSGCNIDGRSNNVGACES-SNYWWNAGNYQRLSGNEQKLYEHVRSKYMNYDYCTDRSKYQTPPREC 289          
BLAST of CN182558 vs. ExPASy Swiss-Prot
Match: XTH26_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 26 OS=Arabidopsis thaliana GN=XTH26 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.632e-23
Identity = 52/130 (40.00%), Postives = 77/130 (59.23%), Query Frame = 1
Query:    1 EDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVDGC--EVSVNAKFC--ETQGKRWWDQKAFQDLDAYQYRRLRWVRQKYTIYNYCNDRARFP-TPSPECKR 375
            +  PIRVF+N +  G+ +P  Q MK+++SLWNA+DWAT+GG  KT+W+ APF+A  + +    C  + SV+ K C   T    WW   +F  L A Q  +++ +R  + IY+YC D  RF     PEC +
Sbjct:  160 DGTPIRVFRNYESEGIAYPNKQGMKVFASLWNAEDWATQGGRVKTNWTLAPFVAEGRRYKARACLWKGSVSIKQCVDPTIRSNWWTSPSFSQLTASQLTKMQKIRDGFMIYDYCKDTNRFKGVMPPECSK 289          
BLAST of CN182558 vs. ExPASy Swiss-Prot
Match: XTH30_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS=Arabidopsis thaliana GN=XTH30 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 6.444e-19
Identity = 47/133 (35.34%), Postives = 74/133 (55.64%), Query Frame = 1
Query:    1 EDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVDGCEV----------SVNAKFCETQGKRWWDQKAFQDLDAYQYRRLRWVRQKYTIYNYCNDRARFPTPSPEC 369
            +DVPIR    +  +G  +P  +PM +Y+++W+A DWAT GG  K ++  APF+A +K F +DGC V          S +  F E+Q         +  ++++Q   +R  RQ++  Y+YC D  R+P P PEC
Sbjct:  170 DDVPIREVIRNDAMGADYPA-KPMALYATIWDASDWATSGGKYKANYKFAPFVAEFKSFSLDGCSVDPIQEVPMDCSDSVDFLESQD--------YSSINSHQRAAMRRFRQRFMYYSYCYDTLRYPEPLPEC 293          
BLAST of CN182558 vs. ExPASy Swiss-Prot
Match: XTH8_ORYSJ (Xyloglucan endotransglycosylase/hydrolase protein 8 OS=Oryza sativa subsp. japonica GN=XTH8 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.198e-18
Identity = 49/132 (37.12%), Postives = 72/132 (54.55%), Query Frame = 1
Query:    1 EDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVDGCEVSVN------AKFCETQGKRWWDQKAFQDLDAYQYRRLRWVRQKYTIYNYCNDRARFPTPSP-ECKR 375
            +DVP+R FK   DL   +P ++PM+++++LW+   WATR G  K DWS APF+ SY+G+  + C V+ N      + +C      W      ++LD  +   + W  + Y  YNYC D  RFP   P EC R
Sbjct:  165 DDVPVRTFKKYDDLA--YPQSKPMRLHATLWDGSYWATRHGDVKIDWSGAPFVVSYRGYSTNAC-VNNNPAGGWSSSWCPEGTSAW----IHRELDGAELGTVAWAERNYMSYNYCADGWRFPQGFPAECYR 289          
BLAST of CN182558 vs. ExPASy Swiss-Prot
Match: XTH31_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 31 OS=Arabidopsis thaliana GN=XTH31 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 8.709e-16
Identity = 45/123 (36.59%), Postives = 65/123 (52.85%), Query Frame = 1
Query:    1 EDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVDGCEVSVNAKFCETQGKRWWDQKAFQDLDAYQYRRLRWVRQKYTIYNYCNDRARFPTPSPEC 369
            +DVPIR + N K+  + FP  +PM +Y S+W+A DWAT  G  K D+   PF+A YK F + GC    ++  C          +    L   Q   L W ++ + +YNYC+D  R  T +PEC
Sbjct:  178 DDVPIRTY-NRKNEAI-FP-TRPMWVYGSIWDASDWATENGRIKADYRYQPFVAKYKNFKLAGCTAD-SSSSCRPPSPAPMRNRG---LSRQQMAALTWAQRNFLVYNYCHDPKRDHTQTPEC 293          
BLAST of CN182558 vs. ExPASy Swiss-Prot
Match: XTH27_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.258e-14
Identity = 39/123 (31.71%), Postives = 66/123 (53.66%), Query Frame = 1
Query:    1 EDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVDGCEVSVNAKFCETQGKRWWDQKAFQDLDAYQYRRLRWVRQKYTIYNYCNDRARFPTPSPEC 369
            ++VPIR  K + ++G  FP ++PM +Y+++W+   WAT GG    ++  AP+IA +    + GC V    +F         D +A Q++   Q  ++   R++   Y+YC DRAR+     EC
Sbjct:  169 DNVPIREVKRTAEMGGHFP-SKPMSLYTTIWDGSKWATNGGKYGVNYKYAPYIARFSDLVLHGCPVDPIEQFPRCDEGAAEDMRAAQEITPSQRSKMDVFRRRLMTYSYCYDRARYNVALSEC 290          
BLAST of CN182558 vs. ExPASy Swiss-Prot
Match: XTH29_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.241e-14
Identity = 40/137 (29.20%), Postives = 67/137 (48.91%), Query Frame = 1
Query:    1 EDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVDGCEVS--------------VNAKFCETQGKRWWDQKAFQDLDAYQYRRLRWVRQKYTIYNYCNDRARFPTPSPEC 369
            +DVPIR     +++   +P  +PM +Y+++W+A  WAT GG    D++ +PF++ +K   +DGC VS               N   C     ++     +  +   Q   +R  R++Y  Y+YC D  R+  P PEC
Sbjct:  178 DDVPIREILRKEEMNGDYP-QKPMSLYATIWDASSWATSGGKFGVDYTFSPFVSEFKDIALDGCNVSDSFPGENNNNNIGNYNNINCSV-SDQFLMSNDYSTISPKQATAMRRFRERYMYYSYCYDTIRYSVPPPEC 312          
BLAST of CN182558 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13
Identity = 36/123 (29.27%), Postives = 63/123 (51.22%), Query Frame = 1
Query:    1 EDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVDGCEVSVNAKFCETQGKRWWDQKAFQDLDAYQYRRLRWVRQKYTIYNYCNDRARFPTPSPEC 369
            ++VPIR  K +  +G  FP  +PM +YS++W+   WAT GG    ++  AP+++ +    + GC V    KF   + +   + +   ++   Q  ++   RQK+  Y+YC D  R+     EC
Sbjct:  169 DNVPIREVKRTASMGGDFPA-KPMSLYSTIWDGSKWATDGGKYGVNYKYAPYVSQFTDLILHGCAVDPTEKFPSCKDEAVQNLRLASEITESQRNKMEIFRQKHMTYSYCYDHMRYKVVLSEC 290          
BLAST of CN182558 vs. ExPASy Swiss-Prot
Match: XTH32_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana GN=XTH32 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.284e-13
Identity = 42/125 (33.60%), Postives = 60/125 (48.00%), Query Frame = 1
Query:    1 EDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVDGCEVSVNAKFCETQGKRWWDQKAFQDLDAYQYRRLRWVRQKYTIYNYCNDRARFPTPSPECKR 375
            +D+PIR +   K     FP  +PM +Y S+W+A  WAT  G  K D+   PF A Y  F   GC    +A+        +        L   Q++ +RWV+    +YNYC D  R  + +PEC R
Sbjct:  182 DDIPIRRYP--KKSASTFPL-RPMWLYGSIWDASSWATEDGKYKADYKYQPFTAKYTNFKALGCTAYSSARCYPLSASPY----RSGGLTRQQHQAMRWVQTHSMVYNYCKDYKRDHSLTPECWR 299          
The following BLAST results are available for this feature:
BLAST of CN182558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
XTH1_ARATH2.986e-2439.52Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH3_ARATH5.094e-2442.06Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH26_ARATH5.632e-2340.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH30_ARATH6.444e-1935.34Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH8_ORYSJ3.198e-1837.12Xyloglucan endotransglycosylase/hydrolase protein ... [more]
XTH31_ARATH8.709e-1636.59Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH27_ARATH1.258e-1431.71Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH29_ARATH6.241e-1429.20Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH28_ARATH2.372e-1329.27Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH32_ARATH5.284e-1333.60Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002K15_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002K15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182558 ID=CN182558; Name=CN182558; organism=Citrus sinensis; type=EST; length=606bp
GAGGATGTGCCGATTAGAGTGTTCAAGAACAGCAAAGATTTGGGAGTGAG
GTTTCCATTCAACCAACCCATGAAGATATACTCAAGCCTGTGGAATGCAG
ATGACTGGGCAACGAGGGGCGGTTTGGAGAAGACGGACTGGTCGAAGGCT
CCTTTCATAGCCTCCTACAAGGGGTTCCACGTTGATGGGTGTGAGGTATC
TGTGAACGCCAAGTTCTGTGAGACACAGGGCAAGAGATGGTGGGATCAGA
AGGCGTTCCAAGACCTTGACGCCTACCAGTACAGGAGACTCAGATGGGTT
CGCCAGAAATACACCATCTATAACTACTGCAACGATCGTGCCCGCTTCCC
TACGCCTTCACCAGAATGCAAACGAGACCGTGACATTTAAGCGTCAATCT
GAGATTCGCTCTGTGTGTGTACCAAGTATCTTAGTATGCCTTTACCATTT
ATATTTATCAGAGGTATTGAAACAGGGCATGGGAGAGTGTATGTATCCAT
TTTACTTGCGTTCTTCATACATATTGTTGCTGCTTATTCTTATATGTATT
TTTTATCAAACCCTATTCGGGATGCATGGCAATAGAAAGTTTATGGGTAA
AAAAAA
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