CN189103

Overview
NameCN189103
Unique NameCN189103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:1059..1775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT1_TOBAC (Actin OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.453e-30
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = -1 
Query:  524 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 718
            DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  313 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT1_ORYSJ (Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.453e-30
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = -1 
Query:  524 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 718
            DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  313 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT1_ORYSI (Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.453e-30
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = -1 
Query:  524 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 718
            DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  313 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT1_ARATH (Actin-1/3 OS=Arabidopsis thaliana GN=ACT1 PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 6.453e-30
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = -1 
Query:  524 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 718
            DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  313 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT12_ARATH (Actin-12 OS=Arabidopsis thaliana GN=ACT12 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.453e-30
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = -1 
Query:  524 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 718
            DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  313 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT11_SOLTU (Actin-97 OS=Solanum tuberosum GN=AC97 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.453e-30
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = -1 
Query:  524 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 718
            DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  313 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT11_ARATH (Actin-11 OS=Arabidopsis thaliana GN=ACT11 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.453e-30
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = -1 
Query:  524 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 718
            DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  313 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT3_SOLTU (Actin-58 OS=Solanum tuberosum GN=AC58 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.101e-29
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = -1 
Query:  524 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 718
            DRMSKE+TALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  313 DRMSKELTALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT2_DAUCA (Actin-2 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.101e-29
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = -1 
Query:  524 MSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 712
            MSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  319 MSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 381
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT1_PEA (Actin-1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.101e-29
Identity = 63/65 (96.92%), Postives = 63/65 (96.92%), Query Frame = -1 
Query:  524 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 718
            DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK EYDE GPSIVHRKCF
Sbjct:  312 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDERGPSIVHRKCF 376
The following BLAST results are available for this feature:
BLAST of CN189103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
ACT1_TOBAC6.453e-3096.92Actin OS=Nicotiana tabacum PE=3 SV=1[more]
ACT1_ORYSJ6.453e-3096.92Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE... [more]
ACT1_ORYSI6.453e-3096.92Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2... [more]
ACT1_ARATH6.453e-3096.92Actin-1/3 OS=Arabidopsis thaliana GN=ACT1 PE=1 SV=... [more]
ACT12_ARATH6.453e-3096.92Actin-12 OS=Arabidopsis thaliana GN=ACT12 PE=1 SV=... [more]
ACT11_SOLTU6.453e-3096.92Actin-97 OS=Solanum tuberosum GN=AC97 PE=3 SV=1[more]
ACT11_ARATH6.453e-3096.92Actin-11 OS=Arabidopsis thaliana GN=ACT11 PE=1 SV=... [more]
ACT3_SOLTU1.101e-2995.38Actin-58 OS=Solanum tuberosum GN=AC58 PE=3 SV=1[more]
ACT2_DAUCA1.101e-29100.00Actin-2 OS=Daucus carota PE=2 SV=1[more]
ACT1_PEA1.101e-2996.92Actin-1 OS=Pisum sativum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001F04_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189103 ID=CN189103; Name=CN189103; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTAATTTGAAATAAGACATTGATTCATCATTGAAA
GCTCTCAAACAAGTATTAAATATATTTTAATAACCAAATTTATGACTGCA
AGCTGACACTAATTAAAGTTTTCTCATACAATAGCTATTAACATTAATGT
TCCTTTTGAGAGGGGGAGAAAAAAAAACCTTCAAATATGAAAATTTAGAA
AATGAAATAGAAAAGCATCACAACCACTCTTCATCTCCAGCTACAAACAT
CCTACTTTAAAAAAAAAAAAGGAAAAAAAAGAAAAAAGACTTGGTTGAAC
ACCAGATGAATGCAAGGCAAGGAAGACGGTTGAGTACAGAAATAAGCCCC
CCTCAAACGCTGTAAGAAGCTTGTATAATAACATCAATATCGAGATATGC
CTCCTTCAATGGCCCCAACCTTAGCACTTCTCCATGTCAACCAACTTGAG
TTCGCGAAACGAGACACAAAAAACCAACTAAATGGAAAAAAAGAACTCAC
CCATCAAGCACTTAAAGAACTTAGAAGCATTTCCTGTGGACAATGGATGG
ACCAGACTCATCATACTCGCCCTTTGAGATCCACATCTGCTGGAAGGTGC
TGAGGGATGCAAGGATTGATCCTCCAATCCAAACACTGTATTTTCTCTCT
GGTGGAGCCACGACCTTGATCTTCATGCTGCTTGGAGCAAGTGCTGTGAT
TTCCTTGCTCATACGGTC
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