CN189103

Overview
NameCN189103
Unique NameCN189103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:1059..1775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT5_CHICK (Actin, cytoplasmic type 5 OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.462e-29
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = -1 
Query:  524 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 718
            DRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  312 DRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT5C_ANOGA (Actin-5C OS=Anopheles gambiae GN=Act5C PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.462e-29
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = -1 
Query:  524 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 718
            DRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  312 DRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT4_CAEEL (Actin-4 OS=Caenorhabditis elegans GN=act-4 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 5.462e-29
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = -1 
Query:  524 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 718
            DRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  312 DRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT4_BOMMO (Actin, cytoplasmic A4 OS=Bombyx mori GN=A4 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.462e-29
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = -1 
Query:  524 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 718
            DRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  312 DRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT4_ARTSX (Actin, clone 403 OS=Artemia sp. PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.462e-29
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = -1 
Query:  524 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 718
            DRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  312 DRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT3_LIMPO (Actin-3 OS=Limulus polyphemus PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.462e-29
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = -1 
Query:  524 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 718
            DRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  312 DRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT3B_HELAM (Actin-A3b, cytoplasmic OS=Helicoverpa armigera GN=actA3b PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.462e-29
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = -1 
Query:  524 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 718
            DRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  312 DRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT3A_HELAM (Actin, cytoplasmic A3a OS=Helicoverpa armigera GN=actA3a PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.462e-29
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = -1 
Query:  524 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 718
            DRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  312 DRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT2_SACKO (Actin-2 OS=Saccoglossus kowalevskii PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.462e-29
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = -1 
Query:  524 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 718
            DRM KEIT+LAPSSMKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  312 DRMQKEITSLAPSSMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT2_ONCVO (Actin-2 OS=Onchocerca volvulus GN=act-2b PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.462e-29
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = -1 
Query:  524 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 718
            DRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  312 DRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
The following BLAST results are available for this feature:
BLAST of CN189103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
ACT5_CHICK5.462e-2992.31Actin, cytoplasmic type 5 OS=Gallus gallus PE=3 SV... [more]
ACT5C_ANOGA5.462e-2992.31Actin-5C OS=Anopheles gambiae GN=Act5C PE=2 SV=1[more]
ACT4_CAEEL5.462e-2992.31Actin-4 OS=Caenorhabditis elegans GN=act-4 PE=2 SV... [more]
ACT4_BOMMO5.462e-2992.31Actin, cytoplasmic A4 OS=Bombyx mori GN=A4 PE=2 SV... [more]
ACT4_ARTSX5.462e-2992.31Actin, clone 403 OS=Artemia sp. PE=2 SV=1[more]
ACT3_LIMPO5.462e-2992.31Actin-3 OS=Limulus polyphemus PE=1 SV=1[more]
ACT3B_HELAM5.462e-2992.31Actin-A3b, cytoplasmic OS=Helicoverpa armigera GN=... [more]
ACT3A_HELAM5.462e-2992.31Actin, cytoplasmic A3a OS=Helicoverpa armigera GN=... [more]
ACT2_SACKO5.462e-2992.31Actin-2 OS=Saccoglossus kowalevskii PE=2 SV=1[more]
ACT2_ONCVO5.462e-2992.31Actin-2 OS=Onchocerca volvulus GN=act-2b PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001F04_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189103 ID=CN189103; Name=CN189103; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTAATTTGAAATAAGACATTGATTCATCATTGAAA
GCTCTCAAACAAGTATTAAATATATTTTAATAACCAAATTTATGACTGCA
AGCTGACACTAATTAAAGTTTTCTCATACAATAGCTATTAACATTAATGT
TCCTTTTGAGAGGGGGAGAAAAAAAAACCTTCAAATATGAAAATTTAGAA
AATGAAATAGAAAAGCATCACAACCACTCTTCATCTCCAGCTACAAACAT
CCTACTTTAAAAAAAAAAAAGGAAAAAAAAGAAAAAAGACTTGGTTGAAC
ACCAGATGAATGCAAGGCAAGGAAGACGGTTGAGTACAGAAATAAGCCCC
CCTCAAACGCTGTAAGAAGCTTGTATAATAACATCAATATCGAGATATGC
CTCCTTCAATGGCCCCAACCTTAGCACTTCTCCATGTCAACCAACTTGAG
TTCGCGAAACGAGACACAAAAAACCAACTAAATGGAAAAAAAGAACTCAC
CCATCAAGCACTTAAAGAACTTAGAAGCATTTCCTGTGGACAATGGATGG
ACCAGACTCATCATACTCGCCCTTTGAGATCCACATCTGCTGGAAGGTGC
TGAGGGATGCAAGGATTGATCCTCCAATCCAAACACTGTATTTTCTCTCT
GGTGGAGCCACGACCTTGATCTTCATGCTGCTTGGAGCAAGTGCTGTGAT
TTCCTTGCTCATACGGTC
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