CN182545

Overview
NameCN182545
Unique NameCN182545
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H32_ASPOF (Histone H3.2 OS=Asparagus officinalis PE=2 SV=3)

HSP 1 Score: 192.586 bits (488), Expect = 2.259e-48
Identity = 98/105 (93.33%), Postives = 99/105 (94.29%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H32_ARATH (Histone H3.2 OS=Arabidopsis thaliana GN=HTR2 PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 2.259e-48
Identity = 98/105 (93.33%), Postives = 99/105 (94.29%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H31_RAT (Histone H3.1 OS=Rattus norvegicus PE=1 SV=3)

HSP 1 Score: 192.586 bits (488), Expect = 2.259e-48
Identity = 97/105 (92.38%), Postives = 99/105 (94.29%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H31_MUSPA (Histone H3.1 OS=Mus pahari GN=H3110 PE=2 SV=3)

HSP 1 Score: 192.586 bits (488), Expect = 2.259e-48
Identity = 97/105 (92.38%), Postives = 99/105 (94.29%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H31_MOUSE (Histone H3.1 OS=Mus musculus GN=Hist1h3a PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 2.259e-48
Identity = 97/105 (92.38%), Postives = 99/105 (94.29%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H31_HUMAN (Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 2.259e-48
Identity = 97/105 (92.38%), Postives = 99/105 (94.29%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H31_BOVIN (Histone H3.1 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 2.259e-48
Identity = 97/105 (92.38%), Postives = 99/105 (94.29%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H32_WHEAT (Histone H3.2 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.950e-48
Identity = 98/105 (93.33%), Postives = 99/105 (94.29%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H32_PEA (Histone H3.2 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.950e-48
Identity = 98/105 (93.33%), Postives = 99/105 (94.29%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H32_ONOVI (Histone H3.2 OS=Onobrychis viciifolia PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.950e-48
Identity = 98/105 (93.33%), Postives = 99/105 (94.29%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
The following BLAST results are available for this feature:
BLAST of CN182545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
H32_ASPOF2.259e-4893.33Histone H3.2 OS=Asparagus officinalis PE=2 SV=3[more]
H32_ARATH2.259e-4893.33Histone H3.2 OS=Arabidopsis thaliana GN=HTR2 PE=1 ... [more]
H31_RAT2.259e-4892.38Histone H3.1 OS=Rattus norvegicus PE=1 SV=3[more]
H31_MUSPA2.259e-4892.38Histone H3.1 OS=Mus pahari GN=H3110 PE=2 SV=3[more]
H31_MOUSE2.259e-4892.38Histone H3.1 OS=Mus musculus GN=Hist1h3a PE=1 SV=2[more]
H31_HUMAN2.259e-4892.38Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2[more]
H31_BOVIN2.259e-4892.38Histone H3.1 OS=Bos taurus PE=1 SV=2[more]
H32_WHEAT2.950e-4893.33Histone H3.2 OS=Triticum aestivum PE=1 SV=2[more]
H32_PEA2.950e-4893.33Histone H3.2 OS=Pisum sativum PE=1 SV=2[more]
H32_ONOVI2.950e-4893.33Histone H3.2 OS=Onobrychis viciifolia PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002K07_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002K07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182545 ID=CN182545; Name=CN182545; organism=Citrus sinensis; type=EST; length=816bp
GGGCCCCCTTGATAGAGCAAATAATAGAGATGTTCAACACCACCACTATT
GTGGCAACAGGTATCCAAAAGAACACATAAAAGCCAGTCTCTTATGGCGA
ATTAAAATCCCCATCATCAACAAATAGACATTATAAAACACCACCAAAAA
CAAACCCAGATGATGACAAAAGCCATATTCTAATAACTACTGGAATCCTA
CCCCTATCTACCCCCACCAACCCCCACGTACAAATTAACACATTACAACT
TCCCCCTTCCCTTCCAGTCATTCAATTGAAGCAAGCAGCAATTACGCTTA
AGCACGCTCGCCACGGATCCTACGGGCAAGCTGTATGTCCTTGGGCATAA
TAGTGACACGCTTTGCATGAATGGCGCAGAGGTTAGTGTCCTCGAAGAGA
CCAACAAGGTAAGCCTCCGCTGCCTCCTGCAGGGCCAGTACTGCATGGCT
CTGGAAACGCAGATCAGTCTTAAAGTCCTGAGCAATTTCACGAACAAGTC
TCTGGAATGGGAGTTTCCTGATAAGCAGCTCGGTACTCTTCTGGTACTTG
CGAATTTCTCGAAGGGCGACGGTTCCAGGACGGTAACGATGAGGCTTCTT
AACACCACCGGTGGTGGGCGCAGACTTACGGGCGCAATAAAGAGCCCTCT
ATTTCCAGTTTTAAATTCCAAGTTCTAAGCTCAATCAACATGTCGGACAC
CTGCGGCAACTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAGAAAGGAA
GCAGCTATGCTGCTGACTTCGTCGAGACTGACTTGAGCTTTGTCAGCACC
GTTGTTGTCATGGACG
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