CN182545

Overview
NameCN182545
Unique NameCN182545
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H32_MEDSA (Histone H3.2 OS=Medicago sativa GN=H3-1.1 PE=1 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.950e-48
Identity = 98/105 (93.33%), Postives = 99/105 (94.29%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H331_CAEEL (Histone H3.3 type 1 OS=Caenorhabditis elegans GN=his-71 PE=2 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 3.853e-48
Identity = 97/105 (92.38%), Postives = 100/105 (95.24%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAPTTGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H3_STRDR (Histone H3, embryonic OS=Strongylocentrotus droebachiensis PE=2 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 5.032e-48
Identity = 96/105 (91.43%), Postives = 100/105 (95.24%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H3_SOLST (Histone H3, embryonic OS=Solaster stimpsoni PE=2 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 5.032e-48
Identity = 96/105 (91.43%), Postives = 100/105 (95.24%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H3_PYCHE (Histone H3, embryonic OS=Pycnopodia helianthoides PE=2 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 5.032e-48
Identity = 96/105 (91.43%), Postives = 100/105 (95.24%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H3_PSAMI (Histone H3, embryonic OS=Psammechinus miliaris PE=2 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 5.032e-48
Identity = 96/105 (91.43%), Postives = 100/105 (95.24%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H3_PISOC (Histone H3, embryonic OS=Pisaster ochraceus PE=2 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 5.032e-48
Identity = 96/105 (91.43%), Postives = 100/105 (95.24%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H3_PISBR (Histone H3, embryonic OS=Pisaster brevispinus PE=2 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 5.032e-48
Identity = 96/105 (91.43%), Postives = 100/105 (95.24%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H3_PARLI (Histone H3, embryonic OS=Paracentrotus lividus PE=2 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 5.032e-48
Identity = 96/105 (91.43%), Postives = 100/105 (95.24%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H3_LYTPI (Histone H3, embryonic OS=Lytechinus pictus PE=2 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 5.032e-48
Identity = 96/105 (91.43%), Postives = 100/105 (95.24%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
The following BLAST results are available for this feature:
BLAST of CN182545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
H32_MEDSA2.950e-4893.33Histone H3.2 OS=Medicago sativa GN=H3-1.1 PE=1 SV=... [more]
H331_CAEEL3.853e-4892.38Histone H3.3 type 1 OS=Caenorhabditis elegans GN=h... [more]
H3_STRDR5.032e-4891.43Histone H3, embryonic OS=Strongylocentrotus droeba... [more]
H3_SOLST5.032e-4891.43Histone H3, embryonic OS=Solaster stimpsoni PE=2 S... [more]
H3_PYCHE5.032e-4891.43Histone H3, embryonic OS=Pycnopodia helianthoides ... [more]
H3_PSAMI5.032e-4891.43Histone H3, embryonic OS=Psammechinus miliaris PE=... [more]
H3_PISOC5.032e-4891.43Histone H3, embryonic OS=Pisaster ochraceus PE=2 S... [more]
H3_PISBR5.032e-4891.43Histone H3, embryonic OS=Pisaster brevispinus PE=2... [more]
H3_PARLI5.032e-4891.43Histone H3, embryonic OS=Paracentrotus lividus PE=... [more]
H3_LYTPI5.032e-4891.43Histone H3, embryonic OS=Lytechinus pictus PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002K07_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002K07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182545 ID=CN182545; Name=CN182545; organism=Citrus sinensis; type=EST; length=816bp
GGGCCCCCTTGATAGAGCAAATAATAGAGATGTTCAACACCACCACTATT
GTGGCAACAGGTATCCAAAAGAACACATAAAAGCCAGTCTCTTATGGCGA
ATTAAAATCCCCATCATCAACAAATAGACATTATAAAACACCACCAAAAA
CAAACCCAGATGATGACAAAAGCCATATTCTAATAACTACTGGAATCCTA
CCCCTATCTACCCCCACCAACCCCCACGTACAAATTAACACATTACAACT
TCCCCCTTCCCTTCCAGTCATTCAATTGAAGCAAGCAGCAATTACGCTTA
AGCACGCTCGCCACGGATCCTACGGGCAAGCTGTATGTCCTTGGGCATAA
TAGTGACACGCTTTGCATGAATGGCGCAGAGGTTAGTGTCCTCGAAGAGA
CCAACAAGGTAAGCCTCCGCTGCCTCCTGCAGGGCCAGTACTGCATGGCT
CTGGAAACGCAGATCAGTCTTAAAGTCCTGAGCAATTTCACGAACAAGTC
TCTGGAATGGGAGTTTCCTGATAAGCAGCTCGGTACTCTTCTGGTACTTG
CGAATTTCTCGAAGGGCGACGGTTCCAGGACGGTAACGATGAGGCTTCTT
AACACCACCGGTGGTGGGCGCAGACTTACGGGCGCAATAAAGAGCCCTCT
ATTTCCAGTTTTAAATTCCAAGTTCTAAGCTCAATCAACATGTCGGACAC
CTGCGGCAACTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAGAAAGGAA
GCAGCTATGCTGCTGACTTCGTCGAGACTGACTTGAGCTTTGTCAGCACC
GTTGTTGTCATGGACG
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