CN182545

Overview
NameCN182545
Unique NameCN182545
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H3_DERIM (Histone H3, embryonic OS=Dermasterias imbricata PE=2 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 5.032e-48
Identity = 96/105 (91.43%), Postives = 100/105 (95.24%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H3_ACRFO (Histone H3 OS=Acropora formosa PE=3 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 5.032e-48
Identity = 97/105 (92.38%), Postives = 99/105 (94.29%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   A KSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AVLALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAAAKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H33_TRIPS (Histone H3.3 OS=Trichinella pseudospiralis GN=HHT3 PE=2 SV=3)

HSP 1 Score: 191.43 bits (485), Expect = 5.032e-48
Identity = 97/105 (92.38%), Postives = 100/105 (95.24%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H32_ENCAL (Histone H3.2 OS=Encephalartos altensteinii PE=1 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 5.032e-48
Identity = 97/105 (92.38%), Postives = 99/105 (94.29%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAP TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPATGGVKKPHRFRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H32_CRILO (Histone H3.2 OS=Cricetulus longicaudatus PE=2 SV=3)

HSP 1 Score: 191.43 bits (485), Expect = 5.032e-48
Identity = 96/105 (91.43%), Postives = 99/105 (94.29%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAP TGGVKKPHRYRPGTV LREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPATGGVKKPHRYRPGTVTLREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H332_CAEEL (Histone H3.3 type 2 OS=Caenorhabditis elegans GN=his-72 PE=1 SV=3)

HSP 1 Score: 190.66 bits (483), Expect = 8.583e-48
Identity = 96/105 (91.43%), Postives = 100/105 (95.24%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAPTTGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKD+Q
Sbjct:   22 ATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H33_XENTR (Histone H3.3 OS=Xenopus tropicalis GN=TGas113e22.1 PE=1 SV=3)

HSP 1 Score: 190.274 bits (482), Expect = 1.121e-47
Identity = 96/105 (91.43%), Postives = 100/105 (95.24%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H33_XENLA (Histone H3.3 OS=Xenopus laevis PE=1 SV=3)

HSP 1 Score: 190.274 bits (482), Expect = 1.121e-47
Identity = 96/105 (91.43%), Postives = 100/105 (95.24%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H33_SPISO (Histone H3.3 OS=Spisula solidissima PE=1 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 1.121e-47
Identity = 96/105 (91.43%), Postives = 100/105 (95.24%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H33_RAT (Histone H3.3 OS=Rattus norvegicus GN=H3f3b PE=1 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 1.121e-47
Identity = 96/105 (91.43%), Postives = 100/105 (95.24%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
The following BLAST results are available for this feature:
BLAST of CN182545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
H3_DERIM5.032e-4891.43Histone H3, embryonic OS=Dermasterias imbricata PE... [more]
H3_ACRFO5.032e-4892.38Histone H3 OS=Acropora formosa PE=3 SV=2[more]
H33_TRIPS5.032e-4892.38Histone H3.3 OS=Trichinella pseudospiralis GN=HHT3... [more]
H32_ENCAL5.032e-4892.38Histone H3.2 OS=Encephalartos altensteinii PE=1 SV... [more]
H32_CRILO5.032e-4891.43Histone H3.2 OS=Cricetulus longicaudatus PE=2 SV=3[more]
H332_CAEEL8.583e-4891.43Histone H3.3 type 2 OS=Caenorhabditis elegans GN=h... [more]
H33_XENTR1.121e-4791.43Histone H3.3 OS=Xenopus tropicalis GN=TGas113e22.1... [more]
H33_XENLA1.121e-4791.43Histone H3.3 OS=Xenopus laevis PE=1 SV=3[more]
H33_SPISO1.121e-4791.43Histone H3.3 OS=Spisula solidissima PE=1 SV=2[more]
H33_RAT1.121e-4791.43Histone H3.3 OS=Rattus norvegicus GN=H3f3b PE=1 SV... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0002K07_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002K07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182545 ID=CN182545; Name=CN182545; organism=Citrus sinensis; type=EST; length=816bp
GGGCCCCCTTGATAGAGCAAATAATAGAGATGTTCAACACCACCACTATT
GTGGCAACAGGTATCCAAAAGAACACATAAAAGCCAGTCTCTTATGGCGA
ATTAAAATCCCCATCATCAACAAATAGACATTATAAAACACCACCAAAAA
CAAACCCAGATGATGACAAAAGCCATATTCTAATAACTACTGGAATCCTA
CCCCTATCTACCCCCACCAACCCCCACGTACAAATTAACACATTACAACT
TCCCCCTTCCCTTCCAGTCATTCAATTGAAGCAAGCAGCAATTACGCTTA
AGCACGCTCGCCACGGATCCTACGGGCAAGCTGTATGTCCTTGGGCATAA
TAGTGACACGCTTTGCATGAATGGCGCAGAGGTTAGTGTCCTCGAAGAGA
CCAACAAGGTAAGCCTCCGCTGCCTCCTGCAGGGCCAGTACTGCATGGCT
CTGGAAACGCAGATCAGTCTTAAAGTCCTGAGCAATTTCACGAACAAGTC
TCTGGAATGGGAGTTTCCTGATAAGCAGCTCGGTACTCTTCTGGTACTTG
CGAATTTCTCGAAGGGCGACGGTTCCAGGACGGTAACGATGAGGCTTCTT
AACACCACCGGTGGTGGGCGCAGACTTACGGGCGCAATAAAGAGCCCTCT
ATTTCCAGTTTTAAATTCCAAGTTCTAAGCTCAATCAACATGTCGGACAC
CTGCGGCAACTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAGAAAGGAA
GCAGCTATGCTGCTGACTTCGTCGAGACTGACTTGAGCTTTGTCAGCACC
GTTGTTGTCATGGACG
back to top