CN189101

Overview
NameCN189101
Unique NameCN189101
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7291 contig Csv1_Contig7291:102..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189101 vs. ExPASy Swiss-Prot
Match: CHAC_SCHPO (Cation transport regulator-like protein OS=Schizosaccharomyces pombe GN=SPBC31F10.03 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.575e-17
Identity = 66/195 (33.85%), Postives = 91/195 (46.67%), Query Frame = 3
Query:  135 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQE-------------TICWGVAYCVRGGPEKERLAM-EYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHE--DDYIIELANEVRKEL 671
            WVFGYGSL+W+P   YD  I  FIK Y R F +   DHRGT   P    TL   +E               CWG+A+ +   P K    + EYL+ RE    +   V  Y       P L   +V+  T     +  +     L +MA+ I+T  G  G+N  YLF+L K +  +  E  D ++ EL  EVRK++
Sbjct:   11 WVFGYGSLIWHPPPHYDYSIPCFIKGYVRRFWMRSEDHRGTVNSPGLVLTLIPYEEWKQFSDWSFTPFDEGCWGMAFRI---PAKYATQVREYLDDREVNGYTAHSVPVYAHTGDEIPVLENCLVYVGTS---KSPQFQPSDDLTQMAKIISTRRGKSGDNFVYLFELAKCLRHLSPESKDIHVFELEAEVRKQM 199          
BLAST of CN189101 vs. ExPASy Swiss-Prot
Match: CHAC_ECOLI (Cation transport protein chaC OS=Escherichia coli (strain K12) GN=chaC PE=3 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 9.159e-15
Identity = 58/179 (32.40%), Postives = 82/179 (45.81%), Query Frame = 3
Query:  135 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHEDDYIIELANEVRKEL 671
            W+FGYGSL+WNP  E+ E   G +  + R F L     RGT   P R   L++   T   GVAY +   PE E L  E     + E  +   +  + + +         IVF   P    +  Y      + +A  IA A GP G N  YLF LE+ +  +G +DD + +L   V+K L
Sbjct:   48 WIFGYGSLMWNPALEFTESCTGTLVGWHRAFCLRLTAGRGTAHQPGRMLALKEGGRTT--GVAYRL---PE-ETLEQELTLLWKREMITGCYLPTWCQLDLDDGRTVNAIVFIMDP---RHPEYESDTRAQVIAPLIAAASGPLGTNAQYLFSLEQELIKLGMQDDGLNDLLVSVKKLL 217          
BLAST of CN189101 vs. ExPASy Swiss-Prot
Match: CHAC_YEAST (Cation transport regulator-like protein OS=Saccharomyces cerevisiae GN=YER163C PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.564e-13
Identity = 55/198 (27.78%), Postives = 84/198 (42.42%), Query Frame = 3
Query:  135 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTL-------------------------EKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTG---------------VIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAM 608
            WV GYGSL++ P   Y  +I   I  + R F  +  DHRGTP +P R  TL                         +   + +  GV Y +   PE  +   EYL  RE    +   V+ + E      A  G               V++ +     + N+ ++GP  ++E A+ IA + GP G+N +YL KLE+A+
Sbjct:    9 WVLGYGSLIYKPPSHYTHRIPAIIHGFARRFWQSSTDHRGTPANPGRVATLIPYEDIIRQTAFLKNVNLYSESAPIQDPDDLVTIGVVYYI--PPEHAQEVREYLNVREQNGYTLHEVEVHLETNREHEAELGEALEQLPRHNKSGKRVLLTSVYIGTIDNEAFVGPETVDETAKVIAVSHGPSGSNYEYLAKLEQAL 204          
The following BLAST results are available for this feature:
BLAST of CN189101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CHAC_SCHPO2.575e-1733.85Cation transport regulator-like protein OS=Schizos... [more]
CHAC_ECOLI9.159e-1532.40Cation transport protein chaC OS=Escherichia coli ... [more]
CHAC_YEAST6.564e-1327.78Cation transport regulator-like protein OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001F03_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189101 ID=CN189101; Name=CN189101; organism=Citrus sinensis; type=EST; length=683bp
AGAGAGGAGAGGAGCGAAGAGAAATAGAAAGAGAGAATACAGAATCCTAA
CCTTAGACGTTTTAGCTTGTTTCGTTTCCCTCTTTTGCTTCAAGTTTCTT
CCTTTCTCTCGCGATTTCCTTGAAAATGGTGTTCTGGGTTTTTGGGTATG
GATCATTGGTGTGGAACCCAGGGTTTGAATATGATGAGAAAATTTTAGGC
TTCATCAAGGACTACAGGCGCGTGTTTGATCTTGCATGCATTGATCACAG
GGGTACACCTCAACACCCGGCTAGAACTTGCACGCTGGAAAAATCTCAAG
AAACCATTTGTTGGGGTGTTGCTTATTGTGTCCGAGGAGGTCCTGAAAAG
GAAAGACTCGCTATGGAGTATTTGGAACGAAGAGAATGCGAGTACGACTC
TAAGACCCTTGTAGACTTTTACAGGGAAGGGGAGCCTTCACAGCCGGCTC
TAACTGGGGTTATAGTTTTCACGTCTACTCCAGACAAAGTATCAAACAAG
TATTATCTGGGGCCTGCTCCATTGGAGGAAATGGCTAGGCAAATTGCAAC
GGCTGTCGGACCCTGTGGAAACAATAGAGACTACCTTTTCAAGTTGGAGA
AGGCCATGTTTGATATTGGTCATGAGGACGACTACATAATAGAGCTGGCA
AATGAAGTGAGGAAAGAGCTTGGAACTGCTGAA
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