CN182542

Overview
NameCN182542
Unique NameCN182542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182542 vs. ExPASy Swiss-Prot
Match: ADH1B_UROHA (Alcohol dehydrogenase 1B OS=Uromastyx hardwickii PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.718e-11
Identity = 47/150 (31.33%), Postives = 68/150 (45.33%), Query Frame = 3
Query:  156 ADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMIL-TYNSIDRDGTKTY-------------GGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVY 563
            A +V IKIL  GIC SD H       V N+PI+ GHE  G V  VG  V+  K GDKV + + +  C +C SC+    N C    L  +  +  DGT  +             G +++  V  +  V++   + PL+    + C   T Y
Sbjct:   33 AHEVRIKILASGICRSDDHVLSGALKV-NFPIILGHEAAGVVESVGEGVTSMKPGDKV-IPIFLPQCGECNSCRHPRGNVCKKSELGPFTGLLYDGTSRFTYQGKPVYHFVRTGTFTEYTVAPEDSVVKIDASAPLEKVCLIGCGFSTGY 180          
BLAST of CN182542 vs. ExPASy Swiss-Prot
Match: ADH1G_PAPHA (Alcohol dehydrogenase 1C OS=Papio hamadryas GN=ADH1C PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 3.550e-11
Identity = 51/152 (33.55%), Postives = 68/152 (44.74%), Query Frame = 3
Query:  156 ADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYC-PNMILTYNSIDRDGTK--TYGG-----------YSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSP 569
            A +V IK++  GIC SD H       VT  P + GHE  G V  VG  V+  K GDKV + +    C KC  C+    NYC  N +       +DGT+  T GG           +S   VVD++ V +     PL+    + C   T Y P
Sbjct:   34 AHEVRIKMVAVGICRSDDHVVSGTL-VTPLPAILGHEAAGIVEGVGEGVTTVKPGDKV-IPLFTPQCGKCRVCKNPESNYCFKNDLSNPRGTMQDGTRRFTCGGKPIHHFLGISTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGP 183          
BLAST of CN182542 vs. ExPASy Swiss-Prot
Match: TDH_THETN (L-threonine 3-dehydrogenase OS=Thermoanaerobacter tengcongensis GN=tdh PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.056e-11
Identity = 42/127 (33.07%), Postives = 62/127 (48.82%), Query Frame = 3
Query:  153 GADDVTIKILFCGICHSDLHC-ARNEWGVTNY--PIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLD 524
            G D+V IK+    IC +D+H    NEW  +    P   GHE VG V ++G NV+  K GD V     +  C KC +C+ G  + C N ++        G  T G +++ I V +  V     N+PL+
Sbjct:   28 GPDEVLIKVKATSICGTDVHIYVWNEWAKSRIKPPKTMGHEFVGEVVEIGENVTSVKVGDLVSAETHIV-CGKCRACRTGNAHICENTLIL-------GVDTDGAFAEYIKVPESNVWINDKNIPLE 146          
BLAST of CN182542 vs. ExPASy Swiss-Prot
Match: TDH_ANADE (L-threonine 3-dehydrogenase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=tdh PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.056e-11
Identity = 41/132 (31.06%), Postives = 64/132 (48.48%), Query Frame = 3
Query:  147 ETGADDVTIKILFCGICHSDLHCAR-NEWGVTNYPI--VPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGA 533
            E G  DV I++    IC +D+H    +EW     P+  V GHE VG V +VG  V  F+ G++V  G    +C  C +C+ G  + C + +         G    G +++ +V+    V R PD++P D  A
Sbjct:   23 EVGVHDVMIRVTKSAICGTDVHIYNWDEWSQKTVPVPMVVGHEYVGRVERVGAEVEAFRPGERVS-GEGHVTCGFCRNCRAGRRHLCRHTVGV-------GVNRPGSFAEYVVIPADNVYRIPDDIPDDIAA 146          
BLAST of CN182542 vs. ExPASy Swiss-Prot
Match: TDH_AERS4 (L-threonine 3-dehydrogenase OS=Aeromonas salmonicida (strain A449) GN=tdh PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.056e-11
Identity = 45/147 (30.61%), Postives = 68/147 (46.26%), Query Frame = 3
Query:  147 ETGADDVTIKILFCGICHSDLHCAR-NEWGVTNYPI--VPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKY 578
            E G +D+ IKI    IC +D+H    +EW     P+  V GHE VG V  VG  V  F  GD+V  G    +C  C +C+ G  + C N I         G    G +++ +V+      + PDN+P +  A     G  V++ + +
Sbjct:   22 ELGHNDLLIKIRKTAICGTDMHIYNWDEWAQKTIPVPMVVGHEYVGEVVAVGQEVRGFAVGDRVS-GEGHITCGHCRNCRAGRTHLCRNTIGV-------GVNRPGSFAEYLVIPAFNAFKLPDNIPDELAAIFDPFGNAVHTALSF 160          
BLAST of CN182542 vs. ExPASy Swiss-Prot
Match: TDH_AERHH (L-threonine 3-dehydrogenase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=tdh PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11
Identity = 44/147 (29.93%), Postives = 68/147 (46.26%), Query Frame = 3
Query:  147 ETGADDVTIKILFCGICHSDLHCAR-NEWGVTNYPI--VPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKY 578
            E G +D+ IKI    IC +D+H    +EW     P+  V GHE VG V  +G  V  F  GD+V  G    +C  C +C+ G  + C N I         G    G +++ +V+      + PDN+P +  A     G  V++ + +
Sbjct:   22 ELGHNDLLIKIRKTAICGTDIHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVRGFAVGDRVS-GEGHITCGHCRNCRAGRTHLCRNTIGV-------GVNRPGAFAEYLVIPAFNAFKLPDNVPDELAAIFDPFGNAVHTALSF 160          
The following BLAST results are available for this feature:
BLAST of CN182542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
ADH1B_UROHA2.718e-1131.33Alcohol dehydrogenase 1B OS=Uromastyx hardwickii P... [more]
ADH1G_PAPHA3.550e-1133.55Alcohol dehydrogenase 1C OS=Papio hamadryas GN=ADH... [more]
TDH_THETN6.056e-1133.07L-threonine 3-dehydrogenase OS=Thermoanaerobacter ... [more]
TDH_ANADE6.056e-1131.06L-threonine 3-dehydrogenase OS=Anaeromyxobacter de... [more]
TDH_AERS46.056e-1130.61L-threonine 3-dehydrogenase OS=Aeromonas salmonici... [more]
TDH_AERHH7.909e-1129.93L-threonine 3-dehydrogenase OS=Aeromonas hydrophil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002K05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002K05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182542 ID=CN182542; Name=CN182542; organism=Citrus sinensis; type=EST; length=793bp
GAGGGTTTAAGTGAGAGTGAAGGATAAAGGCCAGAGAGAGAGAAAGCATG
GCAAAATCACCAGAAACAGAGCAGCCTCAAAAGGCCATTGGTTGGGCTGC
CAGAGACAACACTGGAACCTTCTCCCCATTCCATTTCTCCAGAAGAGAAA
CTGGTGCTGATGATGTAACTATTAAGATCCTCTTTTGTGGGATTTGCCAC
TCGGACTTGCATTGTGCCAGAAATGAATGGGGTGTCACCAATTACCCAAT
TGTTCCCGGGCATGAAATTGTTGGTACTGTGACAAAAGTTGGAAATAACG
TGTCAAAATTCAAAGAGGGTGACAAGGTTGGAGTTGGGGTCTTGGTAGCC
TCCTGCCAAAAATGTGAAAGCTGTCAGCAGGGCTTGGAGAATTACTGTCC
TAATATGATACTTACATATAACTCCATTGATCGTGATGGAACAAAAACTT
ATGGTGGTTACTCAGATCTGATTGTTGTTGATCAGCATTATGTGCTCCGC
TTTCCTGACAACATGCCTCTTGATGCGGGTGCACCACTTTTGTGTGCGGG
GATCACAGTGTACAGCCCAATGAAATATTATGGAATGACTGAGCCAGGCA
AGCATTTGGGTGTAGCAGGACTTGGTGGGCTTGGCCATGTTGCTGTGAAA
ATTGGCAAGGCCTTTGGGTTGAAAGTCACCGTCATCAGTACTTCTCCGAA
AAAAGAGAGTGAAGCGATCAGCAAACTTGGTGCTGATGCATTCCTTGTTT
CCAGTGATCCTGCTAAAGTTAAGGCTGCTATGGGCACTATGGA
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