CN189098

Overview
NameCN189098
Unique NameCN189098
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2703 contig Csv1_Contig2703:1..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSJ (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. japonica GN=CSLF3 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.151e-33
Identity = 80/241 (33.20%), Postives = 124/241 (51.45%), Query Frame = 1
Query:    4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSLFGSP-----STLISPEIPQLHPN--------HVVDKDKPIHESPA---MLSLAHHVAGCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWA 678
            SR K+    H  KAGALN  LR SA+++NA  ++  DCD   N+ Q     +C++ D     N +FVQFPQRF  +   D Y +  +  F    L ++GL+GP+Y+GTG  F R +L+G          I+PE  +   +          +++D+    SP     ++    V   +++ +T WG  +G  Y    ED  TG+ +H +GWRS++C  +  AF G AP  L + L+Q  RW+
Sbjct:  376 SRGKNPNYDHNKKAGALNAQLRASALLSNAQFIINFDCDHYINNSQAFRAAICFMLDQREGDNTAFVQFPQRFDNVDPKDRYGNHNRVFFDGTMLALNGLQGPSYLGTGCMFRRLALYGIDPPHWRQDNITPEASKFGNSILLLESVLEALNQDRFATPSPVNDIFVNELEMVVSASFDKETDWGKGVGYIYDIATEDIVTGFRIHGQGWRSMYCTMEHDAFCGTAPINLTERLHQIVRWS 616          
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSI (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. indica GN=CSLF3 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.151e-33
Identity = 80/241 (33.20%), Postives = 124/241 (51.45%), Query Frame = 1
Query:    4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSLFGSP-----STLISPEIPQLHPN--------HVVDKDKPIHESPA---MLSLAHHVAGCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWA 678
            SR K+    H  KAGALN  LR SA+++NA  ++  DCD   N+ Q     +C++ D     N +FVQFPQRF  +   D Y +  +  F    L ++GL+GP+Y+GTG  F R +L+G          I+PE  +   +          +++D+    SP     ++    V   +++ +T WG  +G  Y    ED  TG+ +H +GWRS++C  +  AF G AP  L + L+Q  RW+
Sbjct:  376 SRGKNPNYDHNKKAGALNAQLRASALLSNAQFIINFDCDHYINNSQALRAAICFMLDQREGDNTAFVQFPQRFDNVDPKDRYGNHNRVFFDGTMLALNGLQGPSYLGTGCMFRRLALYGIDPPHWRQDNITPESSKFGNSILLLESVLEALNQDRFATPSPVNDIFVNELEMVVSASFDKETDWGKGVGYIYDIATEDIVTGFRIHGQGWRSMYCTMEHDAFCGTAPINLTERLHQIVRWS 616          
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSJ (Cellulose synthase-like protein D5 OS=Oryza sativa subsp. japonica GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.563e-33
Identity = 94/304 (30.92%), Postives = 132/304 (43.42%), Query Frame = 1
Query:    4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCR--------------RSLFGSPSTLISPE---------------------------IPQLHPNHVVDKD------------------KPIHESPAMLS------------------LAHHVA--GCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWA 678
            SREK     H  KAGA+N ++R SAI++N P +L  DCD    + Q     +CY+ D      + ++QFPQRF G+  +D YA+     F  N   +DGL+GP YVGTG  F R              R  +G     I P                            +   HP+H   +                   +P+ + P++L+                  +A  V+   C YE+ T+WG ++G  YGS+ ED  TGY +H  GWRS++C   R AF G AP  L D L+Q  RWA
Sbjct:  458 SREKRAGYDHNKKAGAMNAMVRASAILSNGPFMLNFDCDHYIYNCQAIREAMCYMLDRGG-DRICYIQFPQRFEGIDPSDRYANHNTVFFDGNMRALDGLQGPMYVGTGCLFRRYAIYGFNPPRAIEYRGTYGQTKVPIDPRQGSEAMPGAGGGRSGGGSVGGDHELQALSTAHPDHEAPQKFGKSKMFIESIAVAEYQGRPLQDHPSVLNGRPPGALLMPRPPLDAATVAESVSVISCWYEDNTEWGQRVGWIYGSVTEDVVTGYRMHNRGWRSVYCITRRDAFRGTAPINLTDRLHQVLRWA 760          
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSI (Putative cellulose synthase-like protein D5 OS=Oryza sativa subsp. indica GN=CSLD5 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.563e-33
Identity = 94/304 (30.92%), Postives = 132/304 (43.42%), Query Frame = 1
Query:    4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCR--------------RSLFGSPSTLISPE---------------------------IPQLHPNHVVDKD------------------KPIHESPAMLS------------------LAHHVA--GCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWA 678
            SREK     H  KAGA+N ++R SAI++N P +L  DCD    + Q     +CY+ D      + ++QFPQRF G+  +D YA+     F  N   +DGL+GP YVGTG  F R              R  +G     I P                            +   HP+H   +                   +P+ + P++L+                  +A  V+   C YE+ T+WG ++G  YGS+ ED  TGY +H  GWRS++C   R AF G AP  L D L+Q  RWA
Sbjct:  458 SREKRAGYDHNKKAGAMNAMVRASAILSNGPFMLNFDCDHYIYNCQAIREAMCYMLDRGG-DRICYIQFPQRFEGIDPSDRYANHNTVFFDGNMRALDGLQGPMYVGTGCLFRRYAIYGFNPPRAIEYRGTYGQTKVPIDPRQGSEAMPGAGGGRSGGGSVGGDHELQALSTAHPDHEAPQKFGKSKMFIESIAVAEYQGRPLQDHPSVLNGRPPGALLMPRPPLDAATVAESVSVISCWYEDNTEWGQRVGWIYGSVTEDVVTGYRMHNRGWRSVYCITRRDAFRGTAPINLTDRLHQVLRWA 760          
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSJ (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. japonica GN=CSLH2 PE=2 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 3.348e-33
Identity = 83/230 (36.09%), Postives = 118/230 (51.30%), Query Frame = 1
Query:   58 VLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSLFGSP---------STLISPEIPQLHP-------------NHVVD-KDKPIHESPAMLSLAHHVAGCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWA 678
            V  RVSA+MTNAP++L +DCDM  N+PQ  L  +C +       +  FVQ PQRF    K+D + ++ +  F     G+ G++G  Y GTG F  R++++G P          T+ S    +LH              N + D   KP+ +  + + +A  V+ CNY+  T WG ++G  YGSL ED  TG  +H  GWRS+    + PAF G AP      L Q KRWA
Sbjct:  284 VKTRVSAVMTNAPIMLNMDCDMFVNNPQAVLHAMCLLLGFDDEASSGFVQAPQRFYDALKDDPFGNQMECFFKRFISGVQGVQGAFYAGTGCFHRRKAVYGVPPNFNGAEREDTIGSSSYKELHTRFGNSEELNESARNIIWDLSSKPMVDISSRIEVAKAVSACNYDIGTCWGQEVGWVYGSLTEDILTGQRIHAMGWRSVLMVTEPPAFMGSAPIGGPACLTQFKRWA 513          
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSI (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. indica GN=CSLH2 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.348e-33
Identity = 83/230 (36.09%), Postives = 118/230 (51.30%), Query Frame = 1
Query:   58 VLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSLFGSP---------STLISPEIPQLHP-------------NHVVD-KDKPIHESPAMLSLAHHVAGCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWA 678
            V  RVSA+MTNAP++L +DCDM  N+PQ  L  +C +       +  FVQ PQRF    K+D + ++ +  F     G+ G++G  Y GTG F  R++++G P          T+ S    +LH              N + D   KP+ +  + + +A  V+ CNY+  T WG ++G  YGSL ED  TG  +H  GWRS+    + PAF G AP      L Q KRWA
Sbjct:  284 VKTRVSAVMTNAPIMLNMDCDMFVNNPQAVLHAMCLLLGFDDEASSGFVQAPQRFYDALKDDPFGNQMECFFKRFISGVQGVQGAFYAGTGCFHRRKAVYGVPPNFNGAEREDTIGSSSYKELHTRFGNSEELNESARNIIWDLSSKPMVDISSRIEVAKAVSACNYDIGTCWGQEVGWVYGSLTEDILTGQRIHAMGWRSVLMVTEPPAFMGSAPIGGPACLTQFKRWA 513          
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CSLF4_ORYSJ (Mixed-linked glucan synthase 4 OS=Oryza sativa subsp. japonica GN=CSLF4 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.711e-33
Identity = 87/249 (34.94%), Postives = 125/249 (50.20%), Query Frame = 1
Query:    4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDP-ATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSL-----------------------FGSPSTLISPEIPQLHPNHVVDKDKPIHESPAMLSLAHHVAGCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWA 678
            SREK     H+ KAGA+N LLRVSA+++NAP ++  DCD   N+ Q     +C++ D      +++FVQFPQRF  +   D YA+  +  F    L ++GL+GP+Y+GTG  F R +L                       FG+ STL+S  +   +    +     I  S A    A  V  C Y+  T WG   G  Y    ED  TG+ +H +GWRS++ + +  AF G AP  L + L Q  RW+
Sbjct:  385 SREKRPGYNHQKKAGAMNALLRVSALLSNAPFIINFDCDHYVNNSQAFRAPMCFMLDRRGGGDDVAFVQFPQRFDDVDPTDRYANHNRVFFDGTTLSLNGLQGPSYLGTGTMFRRAALYGLEPPRWGAAGSQIKAMDNANKFGASSTLVSSMLDGANQERSITPPVAIDGSVARDLAA--VTACGYDLGTSWGRDAGWVYDIATEDVATGFRMHQQGWRSVYTSMEPAAFRGTAPINLTERLYQILRWS 631          
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CSLF2_ORYSJ (Mixed-linked glucan synthase 2 OS=Oryza sativa subsp. japonica GN=CSLF2 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.170e-32
Identity = 88/248 (35.48%), Postives = 125/248 (50.40%), Query Frame = 1
Query:    4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATR--PNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSLFGSPSTLISPEIPQLHPNHVVDK------------DKPIHESPA--MLSLAHHVAG-------CNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWA 678
            SREK     H+ KAGA+NV+LRVSA+++NAP V+  D D   N+ Q     +C++ D   R   N +FVQFPQRF  +   D YA+  +  F    L ++GL+GP+Y+GTG  F R +L+G           Q+    + +K            D    E     +  L   VAG       C YE+ T WG  +G  Y    ED  TG+ +H +GWRS++ + +  AF G AP  L + L Q  RW+
Sbjct:  375 SREKRPGYNHQKKAGAMNVMLRVSALLSNAPFVINFDGDHYVNNSQAFRAPMCFMLDGRGRGGENTAFVQFPQRFDDVDPTDRYANHNRVFFDGTMLSLNGLQGPSYLGTGTMFRRVALYGVEPPRWGAAASQIKAMDIANKFGSSTSFVGTMLDGANQERSITPLAVLDESVAGDLAALTACAYEDGTSWGRDVGWVYNIATEDVVTGFRMHRQGWRSVYASVEPAAFRGTAPINLTERLYQILRWS 622          
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CSLF1_ORYSJ (Putative mixed-linked glucan synthase 1 OS=Oryza sativa subsp. japonica GN=CSFL1 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.170e-32
Identity = 88/248 (35.48%), Postives = 125/248 (50.40%), Query Frame = 1
Query:    4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATR--PNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSLFGSPSTLISPEIPQLHPNHVVDK------------DKPIHESPA--MLSLAHHVAG-------CNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWA 678
            SREK     H+ KAGA+NV+LRVSA+++NAP V+  D D   N+ Q     +C++ D   R   N +FVQFPQRF  +   D YA+  +  F    L ++GL+GP+Y+GTG  F R +L+G           Q+    + +K            D    E     +  L   VAG       C YE+ T WG  +G  Y    ED  TG+ +H +GWRS++ + +  AF G AP  L + L Q  RW+
Sbjct:  345 SREKRPGYNHQKKAGAMNVMLRVSALLSNAPFVINFDGDHYVNNSQAFRAPMCFMLDGRGRGGENTAFVQFPQRFDDVDPTDRYANHNRVFFDGTMLSLNGLQGPSYLGTGTMFRRVALYGVEPPRWGAAASQIKAMDIANKFGSSTSFVGTMLDGANQERSITPLAVLDESVAGDLAALTACAYEDGTSWGRDVGWVYNIATEDVVTGFRMHRQGWRSVYASVEPAAFRGTAPINLTERLYQILRWS 592          
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CSLB2_ARATH (Cellulose synthase-like protein B2 OS=Arabidopsis thaliana GN=CSLB2 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.718e-30
Identity = 85/255 (33.33%), Postives = 121/255 (47.45%), Query Frame = 1
Query:    4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLC-YISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFL---GMDGLKGPNYVGTGAFFCRRSLFG-SPSTL-------------------------ISPEIPQLHPNHVVDKDKPIHESPAMLSLAHHVAGCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWA 678
            SREK     H +KAGA+N L RVS +MTNAP +L +DCDM +N+     + +C ++     + + +FVQFPQ F        Y S   +L +I      G+ G++GP  VG+G F  RR ++G SP  L                          S E+       +  K  P +     +  A  V  C+YE+QT WG  +G  Y S+ ED  T   +H  GW S +  PD PAF G  P   ++ + Q +RWA
Sbjct:  258 SREKRPNYLHHYKAGAMNFLARVSGLMTNAPYMLNVDCDMYANEADVVRQAMCIFLQKSQNQNHCAFVQFPQEF--------YDSNTIKLTVIKSYMGRGIAGIQGPINVGSGCFHSRRVMYGLSPDELEDNGSLSSVATRELLAEDSLSSGFGNSKEMVTSVVEALQRKPNPQNILTNSIEAAQEVGHCDYESQTSWGKTIGWLYDSMSEDMNTSIGIHSRGWTSSYIAPDPPAFLGSMPPGGLEAMIQQRRWA 504          
The following BLAST results are available for this feature:
BLAST of CN189098 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLF3_ORYSJ1.151e-3333.20Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLF3_ORYSI1.151e-3333.20Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLD5_ORYSJ2.563e-3330.92Cellulose synthase-like protein D5 OS=Oryza sativa... [more]
CSLD5_ORYSI2.563e-3330.92Putative cellulose synthase-like protein D5 OS=Ory... [more]
CSLH2_ORYSJ3.348e-3336.09Cellulose synthase-like protein H2 OS=Oryza sativa... [more]
CSLH2_ORYSI3.348e-3336.09Cellulose synthase-like protein H2 OS=Oryza sativa... [more]
CSLF4_ORYSJ5.711e-3334.94Mixed-linked glucan synthase 4 OS=Oryza sativa sub... [more]
CSLF2_ORYSJ2.170e-3235.48Mixed-linked glucan synthase 2 OS=Oryza sativa sub... [more]
CSLF1_ORYSJ2.170e-3235.48Putative mixed-linked glucan synthase 1 OS=Oryza s... [more]
CSLB2_ARATH7.718e-3033.33Cellulose synthase-like protein B2 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001F01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189098 ID=CN189098; Name=CN189098; organism=Citrus sinensis; type=EST; length=682bp
AGGTCTAGAGAGAAAAGCAAGACTTCTCCTCACCGTTTCAAAGCCGGTGC
CCTCAACGTCCTGCTTCGAGTGTCGGCTATAATGACCAATGCACCAATGG
TCTTGACATTGGACTGCGACATGAGCTCAAATGATCCTCAGACACCTCTT
CGAGTGCTGTGCTACATATCAGACCCAGCAACTCGACCAAACTTGTCATT
CGTCCAGTTCCCTCAACGTTTTCGCGGACTAAGCAAGAACGACATTTACG
CTTCTGAGTTTAAACGCTTGTTTCTGATTAATTTTCTGGGAATGGACGGG
TTAAAGGGTCCTAATTACGTTGGAACCGGAGCCTTCTTTTGTCGACGGTC
GTTATTCGGTAGCCCATCTACTCTAATTTCCCCAGAAATTCCCCAACTCC
ATCCAAACCATGTCGTTGATAAAGATAAACCAATTCATGAGTCCCCGGCC
ATGCTGTCGCTGGCTCATCACGTAGCAGGTTGCAATTATGAGAACCAAAC
CAAATGGGGGTCTAAGATGGGCATCAGATATGGCTCGTTGGTCGAGGACT
ACTACACTGGATATCTACTGCACTGCGAAGGATGGAGGTCCATATTTTGC
AATCCTGATAGGCCAGCATTTTATGGTGACGCCCCAACAACTCTCGTTGA
TTTGCTAAATCAACACAAGCGATGGGCCATTG
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