CN189098

Overview
NameCN189098
Unique NameCN189098
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CSLB3_ARATH (Cellulose synthase-like protein B3 OS=Arabidopsis thaliana GN=CSLB3 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.003e-29
Identity = 85/252 (33.73%), Postives = 116/252 (46.03%), Query Frame = 1
Query:    4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATRPN-LSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSLFG----------SPSTLI----------------SPEIPQLHPNHVVDKDKPIHESPAMLSLAHHVAGCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWA 678
            SREK     H +KAGA+N L+RVS +MTNAP +L +DCDM +N+     + +C     +   N  +FVQFPQ F      D  A E   L      G+ G++GP Y G+G F  RR ++G          S S+L                 S E+       +  K  P +     L  A  V  C++E QT WG  +G  Y S  ED  T   +H  GW S + +P  PAF G  P    + + Q +RWA
Sbjct:  258 SREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVVRQAMCIFLQKSMNSNHCAFVQFPQEFY-----DSNADELTVLQSYLGRGIAGIQGPTYAGSGCFHTRRVMYGLSIDDLEDDGSLSSLATRKYLAEENLAREFGNSNEMVTSVVEALQRKPNPQNTLANSLEAAQEVGHCHFEYQTSWGKTIGWLYESTAEDANTSIGIHSRGWTSSYISPKPPAFLGAMPPGGPEAMLQQRRWA 504          
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CSLB4_ARATH (Cellulose synthase-like protein B4 OS=Arabidopsis thaliana GN=CSLB4 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.533e-29
Identity = 83/252 (32.94%), Postives = 118/252 (46.83%), Query Frame = 1
Query:    4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLC-YISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSLF----------GSPSTLI----------------SPEIPQLHPNHVVDKDKPIHESPAMLSLAHHVAGCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWA 678
            SREK     H +KAGA+N L+RVS +MTNAP +L +DCDM  N+     + +C ++       + +FVQ+PQ F      D    E   L L    G+ G++GP Y G+G F  RR ++          GS S++                 S E+ +   + +  K  P       L  A  +  C+YE QT WG  +G  Y S  ED  T   +H  GW S +  PD PAF G  P    +++ Q +RWA
Sbjct:  258 SREKRPNHFHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYVNEADVVRQAMCIFLQKSMDSNHCAFVQYPQDF-----YDSNVGELTVLQLYLGRGIAGIQGPQYAGSGCFHTRRVMYGLSLDDLGDDGSLSSIATRKYLAEESLTREFGNSKEMVKSVVDALQRKPFPQKNLKDSLETAQEMGHCHYEYQTSWGKNIGWLYDSTTEDVNTSIGIHSRGWTSSYIFPDPPAFLGCMPQGGPEVMVQQRRWA 504          
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CSLB1_ARATH (Cellulose synthase-like protein B1 OS=Arabidopsis thaliana GN=CSLB1 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.114e-28
Identity = 83/255 (32.55%), Postives = 119/255 (46.67%), Query Frame = 1
Query:    4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLC-YISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINF---LGMDGLKGPNYVGTGAFFCRRSLFG-SPST---------------LISPEIPQLHPN------HVVD----KDKPIHESPAMLSLAHHVAGCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWA 678
            SREK     H  K GA+N L RVS +MTNAP +L +DCDM +ND     + +C  + +     + +FVQF Q F        Y S  + + ++      G+ G++GP Y+G+G    RR ++G SP                 L+   + +   N       VVD       P +     +  A  V  C YE QT WG+ +G  Y S+ ED  T   +H  GW S + +PD PAF G  P  + + L Q +RWA
Sbjct:  259 SREKRPNYVHNQKCGAMNFLARVSGLMTNAPYILNVDCDMYANDADVVRQAMCILLQESLNMKHCAFVQFRQEF--------YDSSTELIVVLQSHLGRGIAGIQGPIYIGSGCVHTRRVMYGLSPDDFEVDGSLSSVATREFLVKDSLARRFGNSKEMMKSVVDAIQRNPNPQNILTNSIEAAREVGHCQYEYQTSWGNTIGWLYDSVAEDLNTSIGIHSRGWTSSYISPDTPAFLGSMPAGVPEALLQQRRWA 505          
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSJ (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA4 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.362e-26
Identity = 60/132 (45.45%), Postives = 87/132 (65.91%), Query Frame = 1
Query:    4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSLFG-SPSTLISPEIPQ 396
            SREK     H  KAGA+N L+RVSA++TNAP +L LDCD   N+ +     +C++ DP+   ++ +VQFPQRF G+ ++D YA+     F +N  G+DGL+GP YVGTG  F R++L+G  P +L  P +P+
Sbjct:  438 SREKRPGYQHHKKAGAMNALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPSVGRDVCYVQFPQRFDGIDRSDRYANRNVVFFDVNMKGLDGLQGPVYVGTGCCFYRQALYGYGPPSL--PALPK 567          

HSP 2 Score: 93.5893 bits (231), Expect = 1.046e-18
Identity = 40/77 (51.95%), Postives = 52/77 (67.53%), Query Frame = 1
Query:  451 MLSLAHHVAGCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWAI 681
            ++  A HV  C YE +T+WG ++G  YGS+ ED  TG+ +HC GWRSI+C P RPAF G AP  L D L+Q  RWA+
Sbjct:  656 LIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPIRPAFKGSAPINLSDRLHQVLRWAL 732          
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSI (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA4 PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.362e-26
Identity = 60/132 (45.45%), Postives = 87/132 (65.91%), Query Frame = 1
Query:    4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSLFG-SPSTLISPEIPQ 396
            SREK     H  KAGA+N L+RVSA++TNAP +L LDCD   N+ +     +C++ DP+   ++ +VQFPQRF G+ ++D YA+     F +N  G+DGL+GP YVGTG  F R++L+G  P +L  P +P+
Sbjct:  438 SREKRPGYQHHKKAGAMNALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPSVGRDVCYVQFPQRFDGIDRSDRYANRNVVFFDVNMKGLDGLQGPVYVGTGCCFYRQALYGYGPPSL--PALPK 567          

HSP 2 Score: 93.5893 bits (231), Expect = 1.046e-18
Identity = 40/77 (51.95%), Postives = 52/77 (67.53%), Query Frame = 1
Query:  451 MLSLAHHVAGCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWAI 681
            ++  A HV  C YE +T+WG ++G  YGS+ ED  TG+ +HC GWRSI+C P RPAF G AP  L D L+Q  RWA+
Sbjct:  656 LIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPIRPAFKGSAPINLSDRLHQVLRWAL 732          
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CESA8_ARATH (Cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Arabidopsis thaliana GN=CESA8 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.779e-26
Identity = 62/135 (45.93%), Postives = 85/135 (62.96%), Query Frame = 1
Query:    4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSLFG-SPSTLISPEIPQLHP 405
            SREK     H  KAGA N L+RVSA++TNAP +L LDCD   N+ +     +C++ DP    ++ FVQFPQRF G+ K+D YA+     F +N  G+DG++GP YVGTG  F R++L+G SP     P  P++ P
Sbjct:  434 SREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYVNNSKAVREAMCFLMDPVVGQDVCFVQFPQRFDGIDKSDRYANRNIVFFDVNMRGLDGIQGPVYVGTGTVFRRQALYGYSP-----PSKPRILP 563          

HSP 2 Score: 93.5893 bits (231), Expect = 1.046e-18
Identity = 40/77 (51.95%), Postives = 52/77 (67.53%), Query Frame = 1
Query:  451 MLSLAHHVAGCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWAI 681
            ++  A HV  C YE +T+WG ++G  YGS+ ED  TG+ +HC GWRSI+C P RPAF G AP  L D L+Q  RWA+
Sbjct:  651 LIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWRSIYCMPLRPAFKGSAPINLSDRLHQVLRWAL 727          
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CESA3_ARATH (Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.324e-26
Identity = 60/133 (45.11%), Postives = 81/133 (60.90%), Query Frame = 1
Query:    4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSLFG-SPSTLISPEIPQL 399
            SREK     H  KAGA+N L+RVSA++TN P +L LDCD   N+ +     +C++ DP     + +VQFPQRF G+ KND YA+     F IN  G+DG++GP YVGTG  F R +L+G  P   +  + P L
Sbjct:  509 SREKRPGFQHHKKAGAMNALVRVSAVLTNGPFILNLDCDHYINNSKALREAMCFLMDPNLGKQVCYVQFPQRFDGIDKNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPIKVKHKKPSL 641          

HSP 2 Score: 88.5817 bits (218), Expect = 3.363e-17
Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 1
Query:  451 MLSLAHHVAGCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWAI 681
            +L  A HV  C YE+++ WG ++G  YGS+ ED  TG+ +H  GWRSI+C P  PAF G AP  L D LNQ  RWA+
Sbjct:  733 LLKEAIHVISCGYEDKSDWGMEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKLPAFKGSAPINLSDRLNQVLRWAL 809          
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CESA7_ORYSJ (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA7 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25
Identity = 60/139 (43.17%), Postives = 82/139 (58.99%), Query Frame = 1
Query:    4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSLFGSPSTLISPEIPQLHPNHVVD 420
            SREK     H  KAGA+N L+RVSA++TNAP +L LDCD   N+ +     +C++ D      L +VQFPQRF G+ ++D YA+     F IN  G+DG++GP YVGTG  F R++L+G       P  P+  P    D
Sbjct:  463 SREKRPGYNHHKKAGAMNSLVRVSAVLTNAPFILNLDCDHYVNNSKAVREAMCFLMDKQLGKKLCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGTVFNRQALYG-----YDPPRPEKRPKMTCD 596          

HSP 2 Score: 91.6633 bits (226), Expect = 3.973e-18
Identity = 38/78 (48.72%), Postives = 52/78 (66.67%), Query Frame = 1
Query:  448 AMLSLAHHVAGCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWAI 681
            A++  A HV  C YE +T+WG ++G  YGS+ ED  TG+ +HC GW+S++C P R AF G AP  L D L+Q  RWA+
Sbjct:  729 ALIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCTPARAAFKGSAPINLSDRLHQVLRWAL 806          
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CESA3_ORYSJ (Probable cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA3 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25
Identity = 59/129 (45.74%), Postives = 82/129 (63.57%), Query Frame = 1
Query:    4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSLFG--SPSTLISP 384
            SREK     H  KAGA+N L+RVSA++TNAP +L LDCD   N+ +     +C++ DP     + +VQFPQRF G+ ++D YA+     F IN  G+DG++GP YVGTG  F R++L+G  +P T   P
Sbjct:  529 SREKRPGYNHHKKAGAMNALVRVSAVLTNAPYMLNLDCDHYINNSKAIKEAMCFMMDPLVGKKVCYVQFPQRFDGIDRHDRYANRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPKTKKPP 657          

HSP 2 Score: 92.8189 bits (229), Expect = 1.783e-18
Identity = 43/81 (53.09%), Postives = 54/81 (66.67%), Query Frame = 1
Query:  442 SPA-MLSLAHHVAGCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWAI 681
            SPA +L  A HV  C YE++T WG ++G  YGS+ ED  TG+ +HC GWRSI+C P  PAF G AP  L D L+Q  RWA+
Sbjct:  757 SPASLLKEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSIYCIPKLPAFKGSAPLNLSDRLHQVLRWAL 837          
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSJ (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.506e-25
Identity = 56/119 (47.06%), Postives = 78/119 (65.55%), Query Frame = 1
Query:    4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSLFG 360
            SREK     H  KAGA+N L+RVSA++TNAP +L LDCD   N+ +     +C++ DP     + +VQFPQRF G+ ++D YA+     F IN  G+DG++GP YVGTG  F R++L+G
Sbjct:  528 SREKRPGYNHHKKAGAMNALVRVSAVLTNAPYMLNLDCDHYINNSKAIKEAMCFMMDPLVGKKVCYVQFPQRFDGIDRHDRYANRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYG 646          

HSP 2 Score: 92.4337 bits (228), Expect = 2.329e-18
Identity = 43/81 (53.09%), Postives = 54/81 (66.67%), Query Frame = 1
Query:  442 SPA-MLSLAHHVAGCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWAI 681
            SPA +L  A HV  C YE++T WG ++G  YGS+ ED  TG+ +HC GWRSI+C P R AF G AP  L D L+Q  RWA+
Sbjct:  756 SPASLLKEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSIYCIPKRAAFKGSAPLNLSDRLHQVLRWAL 836          
The following BLAST results are available for this feature:
BLAST of CN189098 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLB3_ARATH5.003e-2933.73Cellulose synthase-like protein B3 OS=Arabidopsis ... [more]
CSLB4_ARATH8.533e-2932.94Cellulose synthase-like protein B4 OS=Arabidopsis ... [more]
CSLB1_ARATH1.114e-2832.55Cellulose synthase-like protein B1 OS=Arabidopsis ... [more]
CESA4_ORYSJ1.362e-2645.45Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA4_ORYSI1.362e-2645.45Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA8_ARATH1.779e-2645.93Cellulose synthase A catalytic subunit 8 [UDP-form... [more]
CESA3_ARATH2.324e-2645.11Cellulose synthase A catalytic subunit 3 [UDP-form... [more]
CESA7_ORYSJ1.153e-2543.17Cellulose synthase A catalytic subunit 7 [UDP-form... [more]
CESA3_ORYSJ1.153e-2545.74Probable cellulose synthase A catalytic subunit 3 ... [more]
CESA5_ORYSJ1.506e-2547.06Probable cellulose synthase A catalytic subunit 5 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001F01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189098 ID=CN189098; Name=CN189098; organism=Citrus sinensis; type=EST; length=682bp
AGGTCTAGAGAGAAAAGCAAGACTTCTCCTCACCGTTTCAAAGCCGGTGC
CCTCAACGTCCTGCTTCGAGTGTCGGCTATAATGACCAATGCACCAATGG
TCTTGACATTGGACTGCGACATGAGCTCAAATGATCCTCAGACACCTCTT
CGAGTGCTGTGCTACATATCAGACCCAGCAACTCGACCAAACTTGTCATT
CGTCCAGTTCCCTCAACGTTTTCGCGGACTAAGCAAGAACGACATTTACG
CTTCTGAGTTTAAACGCTTGTTTCTGATTAATTTTCTGGGAATGGACGGG
TTAAAGGGTCCTAATTACGTTGGAACCGGAGCCTTCTTTTGTCGACGGTC
GTTATTCGGTAGCCCATCTACTCTAATTTCCCCAGAAATTCCCCAACTCC
ATCCAAACCATGTCGTTGATAAAGATAAACCAATTCATGAGTCCCCGGCC
ATGCTGTCGCTGGCTCATCACGTAGCAGGTTGCAATTATGAGAACCAAAC
CAAATGGGGGTCTAAGATGGGCATCAGATATGGCTCGTTGGTCGAGGACT
ACTACACTGGATATCTACTGCACTGCGAAGGATGGAGGTCCATATTTTGC
AATCCTGATAGGCCAGCATTTTATGGTGACGCCCCAACAACTCTCGTTGA
TTTGCTAAATCAACACAAGCGATGGGCCATTG
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