CN189098

Overview
NameCN189098
Unique NameCN189098
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CESA2_ARATH (Cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Arabidopsis thaliana GN=CESA2 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.841e-24
Identity = 53/119 (44.54%), Postives = 79/119 (66.39%), Query Frame = 1 
Query:    4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSLFG 360
            SREK     H  KAGA+N L+RVSA+++NAP +L +DCD   N+ +     +C++ DP +   + +VQFPQRF G+ ++D Y++     F IN  G+DG++GP YVGTG  F R++L+G
Sbjct:  527 SREKRPGFDHHKKAGAMNSLIRVSAVLSNAPYLLNVDCDHYINNSKAIRESMCFMMDPQSGKKVCYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYG 645

HSP 2 Score: 91.2781 bits (225), Expect = 5.189e-18
Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 1 
Query:  430 PIHESPA-MLSLAHHVAGCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWAI 681
            P + SPA +L  A  V  C YE++T+WG ++G  YGS+ ED  TG+ +HC GWRS++C P R AF G AP  L D L+Q  RWA+
Sbjct:  744 PRNASPACLLREAIQVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCMPKRAAFKGSAPINLSDRLHQVLRWAL 828
[Close]
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSJ (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.841e-24
Identity = 60/138 (43.48%), Postives = 81/138 (58.70%), Query Frame = 1 
Query:    4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSLFGSPSTLISPEIPQLHPNHVV 417
            SREK     H  KAGA+N L+RVSA++TN   +L +DCD   N  +     +C++ DPA      +VQFPQRF G+  +D YA+     F IN  G+DG++GP YVGTG  F R++L+G    L   +   L PN VV
Sbjct:  522 SREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNSSKALREAMCFMMDPALGRKTCYVQFPQRFDGIDLHDRYANRNIVFFDINMKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEAD---LEPNIVV 656

HSP 2 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 40/84 (47.62%), Postives = 52/84 (61.90%), Query Frame = 1 
Query:  430 PIHESPAMLSLAHHVAGCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWAI 681
            P     ++L  A HV  C YE++T+WG ++G  YGS+ ED  TG+ +H  GW SI+C P RP F G AP  L D LNQ  RWA+
Sbjct:  736 PSTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPCFKGSAPINLSDRLNQVLRWAL 819
[Close]
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSI (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.841e-24
Identity = 60/138 (43.48%), Postives = 81/138 (58.70%), Query Frame = 1 
Query:    4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSLFGSPSTLISPEIPQLHPNHVV 417
            SREK     H  KAGA+N L+RVSA++TN   +L +DCD   N  +     +C++ DPA      +VQFPQRF G+  +D YA+     F IN  G+DG++GP YVGTG  F R++L+G    L   +   L PN VV
Sbjct:  522 SREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNSSKALREAMCFMMDPALGRKTCYVQFPQRFDGIDLHDRYANRNIVFFDINMKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEAD---LEPNIVV 656

HSP 2 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 40/84 (47.62%), Postives = 52/84 (61.90%), Query Frame = 1 
Query:  430 PIHESPAMLSLAHHVAGCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWAI 681
            P     ++L  A HV  C YE++T+WG ++G  YGS+ ED  TG+ +H  GW SI+C P RP F G AP  L D LNQ  RWA+
Sbjct:  736 PSTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPCFKGSAPINLSDRLNQVLRWAL 819
[Close]
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CSLD6_ARATH (Putative cellulose synthase-like protein D6 OS=Arabidopsis thaliana GN=CSLD6 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.940e-21
Identity = 56/132 (42.42%), Postives = 77/132 (58.33%), Query Frame = 1 
Query:    4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSLFG--SPSTLISPEIP 393
            SREK     H  KAGA+N L+R SAIM+N P +L LDCD    + +     +C++ D      +S+VQFPQRF G+  +D YA++    F IN   +DG++GP YVGTG  F R +L+G   P   +  E P
Sbjct:  435 SREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYVYNSRAFRDGICFMMDH-DGDRVSYVQFPQRFEGIDPSDRYANKNTVFFDINLRALDGIQGPMYVGTGCLFRRTALYGFNPPDVFVVEEEP 565

HSP 2 Score: 75.8702 bits (185), Expect = 2.256e-13
Identity = 38/92 (41.30%), Postives = 54/92 (58.70%), Query Frame = 1 
Query:  403 PNHVVDKDKPIHESPAMLSLAHHVAGCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWA 678
            P  +    KP+    A ++ A +V  C YE++T+WG  +G  YGS+ ED  TG+ +H +GWRS +C  +  AF G AP  L D L+Q  RWA
Sbjct:  637 PGSLTGSRKPLDF--ATVNEAVNVISCWYEDKTEWGFNVGWIYGSVTEDVVTGFRMHEKGWRSFYCVTEPDAFRGSAPINLTDRLHQVLRWA 726
[Close]
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CSLD3_ARATH (Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.839e-21
Identity = 54/119 (45.38%), Postives = 70/119 (58.82%), Query Frame = 1 
Query:    4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSLFG 360
            SREK     H  KAGA+N L+R SAIM+N P +L LDCD    + Q     +C++ D      L +VQFPQRF G+  +D YA+     F +N   +DGL GP YVGTG  F R +L+G
Sbjct:  598 SREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGG-DRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLMGPVYVGTGCLFRRIALYG 715

HSP 2 Score: 79.7221 bits (195), Expect = 1.562e-14
Identity = 35/69 (50.72%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:  472 VAGCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWA 678
            V  C YE++T+WGS++G  YGS+ ED  TGY +H  GW+S++C   R AF G AP  L D L+Q  RWA
Sbjct:  823 VISCWYEDKTEWGSRIGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWA 891
[Close]
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CSLD5_ARATH (Cellulose synthase-like protein D5 OS=Arabidopsis thaliana GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.553e-21
Identity = 52/119 (43.70%), Postives = 70/119 (58.82%), Query Frame = 1 
Query:    4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSLFG 360
            SREK     H  KAGA+N L+R SAIM+N P +L LDCD    +       +C++ D      + +VQFPQRF G+  ND YA+     F ++   +DGL+GP YVGTG  F R +L+G
Sbjct:  626 SREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSMALREGMCFMLDRGG-DRICYVQFPQRFEGIDPNDRYANHNTVFFDVSMRALDGLQGPMYVGTGCIFRRTALYG 743

HSP 2 Score: 80.8777 bits (198), Expect = 7.013e-15
Identity = 38/77 (49.35%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:  448 AMLSLAHHVAGCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWA 678
            A ++ A  V  C YE++T+WG ++G  YGS+ ED  TGY +H  GWRSI+C   R AF G AP  L D L+Q  RWA
Sbjct:  851 ATVAEAISVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSIYCVTKRDAFRGTAPINLTDRLHQVLRWA 927
[Close]
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CSLD4_ORYSJ (Cellulose synthase-like protein D4 OS=Oryza sativa subsp. japonica GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.553e-21
Identity = 53/119 (44.54%), Postives = 71/119 (59.66%), Query Frame = 1 
Query:    4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSLFG 360
            SREK     H  KAGA+N L+R SAIM+N P +L LDCD   ++       +C++ D      + FVQFPQRF G+  +D YA+     F ++   MDGL+GP YVGTG  F R +L+G
Sbjct:  645 SREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYVHNSSALREGMCFMLDRGG-DRVCFVQFPQRFEGVDPSDRYANHNLVFFDVSMRAMDGLQGPMYVGTGCVFRRTALYG 762

HSP 2 Score: 78.5666 bits (192), Expect = 3.481e-14
Identity = 38/78 (48.72%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:  448 AMLSLAHHVAGCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFC-NPDRPAFYGDAPTTLVDLLNQHKRWA 678
            A ++ A  V  C YE +T+WG ++G  YGS+ ED  TGY +H  GWRS++C  P R AF G AP  L D L+Q  RWA
Sbjct:  872 ATVAEAIGVISCFYEEKTEWGRRIGWIYGSVTEDVVTGYRMHNRGWRSVYCVTPRRDAFRGTAPINLTDRLHQVLRWA 949
[Close]
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CSLD2_ARATH (Cellulose synthase-like protein D2 OS=Arabidopsis thaliana GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.553e-21
Identity = 53/119 (44.54%), Postives = 70/119 (58.82%), Query Frame = 1 
Query:    4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSLFG 360
            SREK     H  KAGA+N L+R SAIM+N P +L LDCD    + +     +C++ D      L +VQFPQRF G+  +D YA+     F +N   +DGL GP YVGTG  F R +L+G
Sbjct:  601 SREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSEALREGMCFMMDRGG-DRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLMGPVYVGTGCLFRRIALYG 718

HSP 2 Score: 79.7221 bits (195), Expect = 1.562e-14
Identity = 35/69 (50.72%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:  472 VAGCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWA 678
            V  C YE++T+WGS++G  YGS+ ED  TGY +H  GW+S++C   R AF G AP  L D L+Q  RWA
Sbjct:  823 VISCWYEDKTEWGSRIGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWA 891
[Close]
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSJ (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. japonica GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.553e-21
Identity = 53/119 (44.54%), Postives = 71/119 (59.66%), Query Frame = 1 
Query:    4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSLFG 360
            SREK     H  KAGA+N L+R SAIM+N P +L LDCD    + +     +C++ D      L +VQFPQRF G+  +D YA+     F +N   +DGL+GP YVGTG  F R +L+G
Sbjct:  577 SREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYVYNSKAFREGMCFMMDRGG-DRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYG 694

HSP 2 Score: 78.9518 bits (193), Expect = 2.665e-14
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:  448 AMLSLAHHVAGCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWA 678
            ++++ A  V  C YE +T+WG+++G  YGS+ ED  TGY +H  GW+S++C   R AF G AP  L D L+Q  RWA
Sbjct:  795 SIVAEAISVVSCWYEEKTEWGTRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTHRDAFRGTAPINLTDRLHQVLRWA 871
[Close]
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSI (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. indica GN=CSLD1 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 8.553e-21
Identity = 53/119 (44.54%), Postives = 71/119 (59.66%), Query Frame = 1 
Query:    4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSLFG 360
            SREK     H  KAGA+N L+R SAIM+N P +L LDCD    + +     +C++ D      L +VQFPQRF G+  +D YA+     F +N   +DGL+GP YVGTG  F R +L+G
Sbjct:  577 SREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYVYNSKAFREGMCFMMDRGG-DRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYG 694

HSP 2 Score: 78.9518 bits (193), Expect = 2.665e-14
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:  448 AMLSLAHHVAGCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWA 678
            ++++ A  V  C YE +T+WG+++G  YGS+ ED  TGY +H  GW+S++C   R AF G AP  L D L+Q  RWA
Sbjct:  795 SIVAEAISVVSCWYEEKTEWGTRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTHRDAFRGTAPINLTDRLHQVLRWA 871
The following BLAST results are available for this feature:
BLAST of CN189098 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CESA2_ARATH2.841e-2444.54Cellulose synthase A catalytic subunit 2 [UDP-form... [more]
CESA1_ORYSJ2.841e-2443.48Probable cellulose synthase A catalytic subunit 1 ... [more]
CESA1_ORYSI2.841e-2443.48Probable cellulose synthase A catalytic subunit 1 ... [more]
CSLD6_ARATH2.940e-2142.42Putative cellulose synthase-like protein D6 OS=Ara... [more]
CSLD3_ARATH3.839e-2145.38Cellulose synthase-like protein D3 OS=Arabidopsis ... [more]
CSLD5_ARATH8.553e-2143.70Cellulose synthase-like protein D5 OS=Arabidopsis ... [more]
CSLD4_ORYSJ8.553e-2144.54Cellulose synthase-like protein D4 OS=Oryza sativa... [more]
CSLD2_ARATH8.553e-2144.54Cellulose synthase-like protein D2 OS=Arabidopsis ... [more]
CSLD1_ORYSJ8.553e-2144.54Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CSLD1_ORYSI8.553e-2144.54Cellulose synthase-like protein D1 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001F01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189098 ID=CN189098; Name=CN189098; organism=Citrus sinensis; type=EST; length=682bp
AGGTCTAGAGAGAAAAGCAAGACTTCTCCTCACCGTTTCAAAGCCGGTGC
CCTCAACGTCCTGCTTCGAGTGTCGGCTATAATGACCAATGCACCAATGG
TCTTGACATTGGACTGCGACATGAGCTCAAATGATCCTCAGACACCTCTT
CGAGTGCTGTGCTACATATCAGACCCAGCAACTCGACCAAACTTGTCATT
CGTCCAGTTCCCTCAACGTTTTCGCGGACTAAGCAAGAACGACATTTACG
CTTCTGAGTTTAAACGCTTGTTTCTGATTAATTTTCTGGGAATGGACGGG
TTAAAGGGTCCTAATTACGTTGGAACCGGAGCCTTCTTTTGTCGACGGTC
GTTATTCGGTAGCCCATCTACTCTAATTTCCCCAGAAATTCCCCAACTCC
ATCCAAACCATGTCGTTGATAAAGATAAACCAATTCATGAGTCCCCGGCC
ATGCTGTCGCTGGCTCATCACGTAGCAGGTTGCAATTATGAGAACCAAAC
CAAATGGGGGTCTAAGATGGGCATCAGATATGGCTCGTTGGTCGAGGACT
ACTACACTGGATATCTACTGCACTGCGAAGGATGGAGGTCCATATTTTGC
AATCCTGATAGGCCAGCATTTTATGGTGACGCCCCAACAACTCTCGTTGA
TTTGCTAAATCAACACAAGCGATGGGCCATTG
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