CN189098

Overview
NameCN189098
Unique NameCN189098
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSJ (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. japonica GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20
Identity = 51/119 (42.86%), Postives = 70/119 (58.82%), Query Frame = 1
Query:    4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSLFG 360
            SREK     H  KAGA+N L+R SA+M+N P +L LDCD    + Q     +C++ D      + +VQFPQRF G+  +D YA+     F +N   +DG+ GP YVGTG  F R +L+G
Sbjct:  623 SREKRPGYDHNKKAGAMNALVRSSAVMSNGPFILNLDCDHYVYNSQAFREGMCFMMDRGG-DRIGYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGIMGPVYVGTGCLFRRIALYG 740          

HSP 2 Score: 78.1814 bits (191), Expect = 4.546e-14
Identity = 34/69 (49.28%), Postives = 45/69 (65.22%), Query Frame = 1
Query:  472 VAGCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWA 678
            V  C YE++T+WG ++G  YGS+ ED  TGY +H  GW+S++C   R AF G AP  L D L+Q  RWA
Sbjct:  848 VISCWYEDKTEWGQRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWA 916          
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSI (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. indica GN=CSLD2 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20
Identity = 51/119 (42.86%), Postives = 70/119 (58.82%), Query Frame = 1
Query:    4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSLFG 360
            SREK     H  KAGA+N L+R SA+M+N P +L LDCD    + Q     +C++ D      + +VQFPQRF G+  +D YA+     F +N   +DG+ GP YVGTG  F R +L+G
Sbjct:  623 SREKRPGYDHNKKAGAMNALVRSSAVMSNGPFILNLDCDHYVYNSQAFREGMCFMMDRGG-DRIGYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGIMGPVYVGTGCLFRRIALYG 740          

HSP 2 Score: 78.1814 bits (191), Expect = 4.546e-14
Identity = 34/69 (49.28%), Postives = 45/69 (65.22%), Query Frame = 1
Query:  472 VAGCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWA 678
            V  C YE++T+WG ++G  YGS+ ED  TGY +H  GW+S++C   R AF G AP  L D L+Q  RWA
Sbjct:  848 VISCWYEDKTEWGQRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWA 916          
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CSLF6_ORYSJ (Probable mixed-linked glucan synthase 6 OS=Oryza sativa subsp. japonica GN=CSLF6 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.544e-20
Identity = 50/119 (42.02%), Postives = 73/119 (61.34%), Query Frame = 1
Query:    4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSLFG 360
            +REK     H+ KAGA+N L R SA+++N+P +L LDCD   N+ Q     +C++    +   ++FVQFPQRF G+   D+YA+  +  F      +DGL+GP YVGTG  F R +L+G
Sbjct:  393 AREKRPGCNHQKKAGAMNALTRASAVLSNSPFILNLDCDHYINNSQALRAGICFMLGRDS-DTVAFVQFPQRFEGVDPTDLYANHNRIFFDGTLRALDGLQGPIYVGTGCLFRRITLYG 510          

HSP 2 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 33/77 (42.86%), Postives = 45/77 (58.44%), Query Frame = 1
Query:  448 AMLSLAHHVAGCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWA 678
            A ++ A  V    YE +T WGS +G  YG++ ED  TGY +H +GWRS +C+    AF G AP  L + L Q  RW+
Sbjct:  603 AAIAEAVMVTAAAYEKKTGWGSDIGWVYGTVTEDVVTGYRMHIKGWRSRYCSIYPHAFIGTAPINLTERLFQVLRWS 679          
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CSLD1_ARATH (Cellulose synthase-like protein D1 OS=Arabidopsis thaliana GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.189e-18
Identity = 48/119 (40.34%), Postives = 69/119 (57.98%), Query Frame = 1
Query:    4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSLFG 360
            SREK     H  KAGA+N ++R SAI++N   +L LDCD    + +     +C++ D      + ++QFPQRF G+  +D YA+     F  N   +DGL+GP YVGTG  F R +L+G
Sbjct:  489 SREKRPGFDHNKKAGAMNGMVRASAILSNGAFILNLDCDHYIYNSKAIKEGMCFMMDRGG-DRICYIQFPQRFEGIDPSDRYANHNTVFFDGNMRALDGLQGPVYVGTGCMFRRYALYG 606          

HSP 2 Score: 78.9518 bits (193), Expect = 2.665e-14
Identity = 35/69 (50.72%), Postives = 44/69 (63.77%), Query Frame = 1
Query:  472 VAGCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWA 678
            V  C YE+ T+WG ++G  YGS+ ED  TGY +H  GWRS++C   R AF G AP  L D L+Q  RWA
Sbjct:  716 VISCWYEDNTEWGDRIGWIYGSVTEDVVTGYRMHNRGWRSVYCITKRDAFRGTAPINLTDRLHQVLRWA 784          
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CESAB_ORYSJ (Putative cellulose synthase A catalytic subunit 11 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA11 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.786e-17
Identity = 49/119 (41.18%), Postives = 64/119 (53.78%), Query Frame = 1
Query:    4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSLFG 360
            SREK     H  KAGA+N LLRVSA++TN   VL LDCD   N+       +C++ DP       FVQF  R  G   +  +  E K L        DG++GP YVG+G  F R++L+G
Sbjct:  298 SREKRPGFRHHGKAGAMNALLRVSAVLTNGAYVLNLDCDHCVNNSSALREAMCFMMDPVAGNRTCFVQFALRDSGGGDSVFFDIEMKCL--------DGIQGPVYVGSGCCFSRKALYG 408          
The following BLAST results are available for this feature:
BLAST of CN189098 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLD2_ORYSJ2.489e-2042.86Cellulose synthase-like protein D2 OS=Oryza sativa... [more]
CSLD2_ORYSI2.489e-2042.86Cellulose synthase-like protein D2 OS=Oryza sativa... [more]
CSLF6_ORYSJ5.544e-2042.02Probable mixed-linked glucan synthase 6 OS=Oryza s... [more]
CSLD1_ARATH5.189e-1840.34Cellulose synthase-like protein D1 OS=Arabidopsis ... [more]
CESAB_ORYSJ9.786e-1741.18Putative cellulose synthase A catalytic subunit 11... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001F01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189098 ID=CN189098; Name=CN189098; organism=Citrus sinensis; type=EST; length=682bp
AGGTCTAGAGAGAAAAGCAAGACTTCTCCTCACCGTTTCAAAGCCGGTGC
CCTCAACGTCCTGCTTCGAGTGTCGGCTATAATGACCAATGCACCAATGG
TCTTGACATTGGACTGCGACATGAGCTCAAATGATCCTCAGACACCTCTT
CGAGTGCTGTGCTACATATCAGACCCAGCAACTCGACCAAACTTGTCATT
CGTCCAGTTCCCTCAACGTTTTCGCGGACTAAGCAAGAACGACATTTACG
CTTCTGAGTTTAAACGCTTGTTTCTGATTAATTTTCTGGGAATGGACGGG
TTAAAGGGTCCTAATTACGTTGGAACCGGAGCCTTCTTTTGTCGACGGTC
GTTATTCGGTAGCCCATCTACTCTAATTTCCCCAGAAATTCCCCAACTCC
ATCCAAACCATGTCGTTGATAAAGATAAACCAATTCATGAGTCCCCGGCC
ATGCTGTCGCTGGCTCATCACGTAGCAGGTTGCAATTATGAGAACCAAAC
CAAATGGGGGTCTAAGATGGGCATCAGATATGGCTCGTTGGTCGAGGACT
ACTACACTGGATATCTACTGCACTGCGAAGGATGGAGGTCCATATTTTGC
AATCCTGATAGGCCAGCATTTTATGGTGACGCCCCAACAACTCTCGTTGA
TTTGCTAAATCAACACAAGCGATGGGCCATTG
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