CN189098
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSJ (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. japonica GN=CSLD2 PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20 Identity = 51/119 (42.86%), Postives = 70/119 (58.82%), Query Frame = 1 Query: 4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSLFG 360 SREK H KAGA+N L+R SA+M+N P +L LDCD + Q +C++ D + +VQFPQRF G+ +D YA+ F +N +DG+ GP YVGTG F R +L+G Sbjct: 623 SREKRPGYDHNKKAGAMNALVRSSAVMSNGPFILNLDCDHYVYNSQAFREGMCFMMDRGG-DRIGYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGIMGPVYVGTGCLFRRIALYG 740 HSP 2 Score: 78.1814 bits (191), Expect = 4.546e-14 Identity = 34/69 (49.28%), Postives = 45/69 (65.22%), Query Frame = 1 Query: 472 VAGCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWA 678 V C YE++T+WG ++G YGS+ ED TGY +H GW+S++C R AF G AP L D L+Q RWA Sbjct: 848 VISCWYEDKTEWGQRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWA 916
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSI (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. indica GN=CSLD2 PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20 Identity = 51/119 (42.86%), Postives = 70/119 (58.82%), Query Frame = 1 Query: 4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSLFG 360 SREK H KAGA+N L+R SA+M+N P +L LDCD + Q +C++ D + +VQFPQRF G+ +D YA+ F +N +DG+ GP YVGTG F R +L+G Sbjct: 623 SREKRPGYDHNKKAGAMNALVRSSAVMSNGPFILNLDCDHYVYNSQAFREGMCFMMDRGG-DRIGYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGIMGPVYVGTGCLFRRIALYG 740 HSP 2 Score: 78.1814 bits (191), Expect = 4.546e-14 Identity = 34/69 (49.28%), Postives = 45/69 (65.22%), Query Frame = 1 Query: 472 VAGCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWA 678 V C YE++T+WG ++G YGS+ ED TGY +H GW+S++C R AF G AP L D L+Q RWA Sbjct: 848 VISCWYEDKTEWGQRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWA 916
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CSLF6_ORYSJ (Probable mixed-linked glucan synthase 6 OS=Oryza sativa subsp. japonica GN=CSLF6 PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 5.544e-20 Identity = 50/119 (42.02%), Postives = 73/119 (61.34%), Query Frame = 1 Query: 4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSLFG 360 +REK H+ KAGA+N L R SA+++N+P +L LDCD N+ Q +C++ + ++FVQFPQRF G+ D+YA+ + F +DGL+GP YVGTG F R +L+G Sbjct: 393 AREKRPGCNHQKKAGAMNALTRASAVLSNSPFILNLDCDHYINNSQALRAGICFMLGRDS-DTVAFVQFPQRFEGVDPTDLYANHNRIFFDGTLRALDGLQGPIYVGTGCLFRRITLYG 510 HSP 2 Score: 67.3958 bits (163), Expect = 8.024e-11 Identity = 33/77 (42.86%), Postives = 45/77 (58.44%), Query Frame = 1 Query: 448 AMLSLAHHVAGCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWA 678 A ++ A V YE +T WGS +G YG++ ED TGY +H +GWRS +C+ AF G AP L + L Q RW+ Sbjct: 603 AAIAEAVMVTAAAYEKKTGWGSDIGWVYGTVTEDVVTGYRMHIKGWRSRYCSIYPHAFIGTAPINLTERLFQVLRWS 679
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CSLD1_ARATH (Cellulose synthase-like protein D1 OS=Arabidopsis thaliana GN=CSLD1 PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.189e-18 Identity = 48/119 (40.34%), Postives = 69/119 (57.98%), Query Frame = 1 Query: 4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSLFG 360 SREK H KAGA+N ++R SAI++N +L LDCD + + +C++ D + ++QFPQRF G+ +D YA+ F N +DGL+GP YVGTG F R +L+G Sbjct: 489 SREKRPGFDHNKKAGAMNGMVRASAILSNGAFILNLDCDHYIYNSKAIKEGMCFMMDRGG-DRICYIQFPQRFEGIDPSDRYANHNTVFFDGNMRALDGLQGPVYVGTGCMFRRYALYG 606 HSP 2 Score: 78.9518 bits (193), Expect = 2.665e-14 Identity = 35/69 (50.72%), Postives = 44/69 (63.77%), Query Frame = 1 Query: 472 VAGCNYENQTKWGSKMGIRYGSLVEDYYTGYLLHCEGWRSIFCNPDRPAFYGDAPTTLVDLLNQHKRWA 678 V C YE+ T+WG ++G YGS+ ED TGY +H GWRS++C R AF G AP L D L+Q RWA Sbjct: 716 VISCWYEDNTEWGDRIGWIYGSVTEDVVTGYRMHNRGWRSVYCITKRDAFRGTAPINLTDRLHQVLRWA 784
BLAST of CN189098 vs. ExPASy Swiss-Prot
Match: CESAB_ORYSJ (Putative cellulose synthase A catalytic subunit 11 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA11 PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 9.786e-17 Identity = 49/119 (41.18%), Postives = 64/119 (53.78%), Query Frame = 1 Query: 4 SREKSKTSPHRFKAGALNVLLRVSAIMTNAPMVLTLDCDMSSNDPQTPLRVLCYISDPATRPNLSFVQFPQRFRGLSKNDIYASEFKRLFLINFLGMDGLKGPNYVGTGAFFCRRSLFG 360 SREK H KAGA+N LLRVSA++TN VL LDCD N+ +C++ DP FVQF R G + + E K L DG++GP YVG+G F R++L+G Sbjct: 298 SREKRPGFRHHGKAGAMNALLRVSAVLTNGAYVLNLDCDHCVNNSSALREAMCFMMDPVAGNRTCFVQFALRDSGGGDSVFFDIEMKCL--------DGIQGPVYVGSGCCFSRKALYG 408 The following BLAST results are available for this feature:
BLAST of CN189098 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189098 ID=CN189098; Name=CN189098; organism=Citrus sinensis; type=EST; length=682bpback to top |