CN189093

Overview
NameCN189093
Unique NameCN189093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: DNAK_PELUB (Chaperone protein dnaK OS=Pelagibacter ubique GN=dnaK PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.446e-20
Identity = 56/141 (39.72%), Postives = 78/141 (55.32%), Query Frame = 1
Query:  265 VLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDSSKVQTSLYP---KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATK 678
            ++GIDLGTT S V++M+G  P V+E  EG R T       PSVV F  +GE  VG+ A       P   +F  K L+G  ++   V+  +     KIV   KG+AW+E +   +SP++I AFIL KM+   E YL +  TK
Sbjct:    4 IIGIDLGTTNSCVSIMEGSQPKVLENAEGARTT-------PSVVAFTEDGEKLVGQPAKRQAVTNPENTIFAVKRLIGRSFEDPTVKKDIAAAPFKIVNSEKGDAWIEAKGEKYSPSQISAFILQKMKETAEKYLGQEVTK 137          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: DNAK_RHIEC (Chaperone protein dnaK OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=dnaK PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.889e-20
Identity = 63/141 (44.68%), Postives = 77/141 (54.61%), Query Frame = 1
Query:  265 VLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDSSKVQTS--LYP-KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATK 678
            V+GIDLGTT S VAVM G+D  VIE  EG R T       PS+V F  +GE  VG+ A       P+  LF  K L+G  Y+   V+    L P  IV+G  G+AWVE     +SPA+I A IL KM+   E YL E   K
Sbjct:    4 VIGIDLGTTNSCVAVMDGKDAKVIENAEGARTT-------PSMVAFSDDGERLVGQPAKRQAVTNPTNTLFAVKRLIGRRYEDPTVEKDKHLVPFSIVKGDNGDAWVEANGKGYSPAQISAMILQKMKETAESYLGEKVEK 137          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: DNAK_RHIE6 (Chaperone protein dnaK OS=Rhizobium etli (strain CIAT 652) GN=dnaK PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.889e-20
Identity = 63/141 (44.68%), Postives = 77/141 (54.61%), Query Frame = 1
Query:  265 VLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDSSKVQTS--LYP-KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATK 678
            V+GIDLGTT S VAVM G+D  VIE  EG R T       PS+V F  +GE  VG+ A       P+  LF  K L+G  Y+   V+    L P  IV+G  G+AWVE     +SPA+I A IL KM+   E YL E   K
Sbjct:    4 VIGIDLGTTNSCVAVMDGKDAKVIENAEGARTT-------PSMVAFSDDGERLVGQPAKRQAVTNPTNTLFAVKRLIGRRYEDPTVEKDKHLVPFSIVKGDNGDAWVEANGKGYSPAQISAMILQKMKETAESYLGEKVEK 137          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: DNAK_NITWN (Chaperone protein dnaK OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=dnaK PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.889e-20
Identity = 59/137 (43.07%), Postives = 76/137 (55.47%), Query Frame = 1
Query:  259 GNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDSSKVQ--TSLYP-KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYL 660
            G V+GIDLGTT S VAVM G+ P VIE  EG        R+ PS+V F  +GE  VG+ A       P R +F  K L+G  YD   V+    L P KI +   G+AWVE +   +SP++I AF L KM+   E +L
Sbjct:    2 GKVIGIDLGTTNSCVAVMDGKTPKVIENAEG-------MRTTPSIVAFSDDGERLVGQPAKRQAVTNPERTIFAVKRLIGRRYDDPTVEKDKQLVPYKIAKAGNGDAWVEADGKTYSPSQISAFTLQKMKETAEAHL 131          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: DNAK_NITHX (Chaperone protein dnaK OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=dnaK PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.889e-20
Identity = 59/137 (43.07%), Postives = 76/137 (55.47%), Query Frame = 1
Query:  259 GNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDSSKVQTS--LYP-KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYL 660
            G V+GIDLGTT S VAVM G+ P VIE  EG        R+ PS+V F  +GE  VG+ A       P R +F  K L+G  YD   V+    L P KI +   G+AWVE +   +SP++I AF L KM+   E +L
Sbjct:    2 GKVIGIDLGTTNSCVAVMDGKTPKVIENAEG-------MRTTPSIVAFSDDGERLVGQPAKRQAVTNPERTIFAVKRLIGRRYDDPTVEKDKHLVPYKIAKAGNGDAWVEVDGKTYSPSQISAFTLQKMKETAEAHL 131          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: HSP71_TRYCR (Heat shock 70 kDa protein, mitochondrial OS=Trypanosoma cruzi GN=MTP70 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.467e-20
Identity = 64/153 (41.83%), Postives = 87/153 (56.86%), Query Frame = 1
Query:  214 VSSMSLARNFSSKSQGNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDSSKVQTSLYP---KIVRGFKGEAWVETEFG-IFSPAKIQAFILAKMRAIGEVYL 660
            +++ SLAR  SSK  G+V+GIDLGTTYS VAVM+G+ P V+E  EG       FR+ PSVV FK   E  VG  A       P    F  K L+G  ++ S +Q  +     KI R   G+AWV+   G  +SP+++ AF+L KM+   E +L
Sbjct:   12 LAAASLARWQSSKVTGDVIGIDLGTTYSCVAVMEGDKPRVLENTEG-------FRATPSVVAFK-GQEKLVGLAAKRQAVTNPQSTFFAVKRLIGRRFEDSNIQHDIKNVPYKIGRSSNGDAWVQDANGKQYSPSQVGAFVLEKMKETAENFL 156          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: DNAK_RHILW (Chaperone protein dnaK OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=dnaK PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.467e-20
Identity = 63/141 (44.68%), Postives = 77/141 (54.61%), Query Frame = 1
Query:  265 VLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDSSKVQTS--LYP-KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATK 678
            V+GIDLGTT S VAVM G+D  VIE  EG R T       PS+V F  +GE  VG+ A       P+  LF  K L+G  Y+   V+    L P  IV+G  G+AWVE     +SPA+I A IL KM+   E YL E   K
Sbjct:    4 VIGIDLGTTNSCVAVMDGKDAKVIENAEGARTT-------PSMVAFSDDGERLVGQPAKRQAVTNPTNTLFAVKRLIGRRYEDPTVEKDKHLVPFTIVKGDNGDAWVEANGKGYSPAQISAMILQKMKETAESYLGEKVEK 137          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: DNAK_RHILE (Chaperone protein dnaK OS=Rhizobium leguminosarum GN=dnaK PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.467e-20
Identity = 63/141 (44.68%), Postives = 77/141 (54.61%), Query Frame = 1
Query:  265 VLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDSSKVQTS--LYP-KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATK 678
            V+GIDLGTT S VAVM G+D  VIE  EG R T       PS+V F  +GE  VG+ A       P+  LF  K L+G  Y+   V+    L P  IV+G  G+AWVE     +SPA+I A IL KM+   E YL E   K
Sbjct:    4 VIGIDLGTTNSCVAVMDGKDAKVIENAEGARTT-------PSMVAFSDDGERLVGQPAKRQAVTNPTNTLFAVKRLIGRRYEDPTVEKDKHLVPFTIVKGDNGDAWVEANGKGYSPAQISAMILQKMKETAESYLGEKVEK 137          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: DNAK_RHIL3 (Chaperone protein dnaK OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=dnaK PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.467e-20
Identity = 63/141 (44.68%), Postives = 77/141 (54.61%), Query Frame = 1
Query:  265 VLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDSSKVQTS--LYP-KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATK 678
            V+GIDLGTT S VAVM G+D  VIE  EG R T       PS+V F  +GE  VG+ A       P+  LF  K L+G  Y+   V+    L P  IV+G  G+AWVE     +SPA+I A IL KM+   E YL E   K
Sbjct:    4 VIGIDLGTTNSCVAVMDGKDAKVIENAEGARTT-------PSMVAFSDDGERLVGQPAKRQAVTNPTNTLFAVKRLIGRRYEDPTVEKDKHLVPFTIVKGDNGDAWVEANGKGYSPAQISAMILQKMKETAESYLGEKVEK 137          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: DNAK_RICAH (Chaperone protein dnaK OS=Rickettsia akari (strain Hartford) GN=dnaK PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.222e-20
Identity = 60/143 (41.96%), Postives = 80/143 (55.94%), Query Frame = 1
Query:  259 GNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDS---SKVQTSLYPKIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATK 678
            G V+GIDLGTT S VAVM+G++P VIE  EG R T       PS++ F  NGE  VG+ A       PS  ++  K L+G  +      K Q  +   IV+   G+AWVE +   +SP++I AFIL KM+   E YL E  T+
Sbjct:    2 GKVIGIDLGTTNSCVAVMEGKEPKVIENAEGERTT-------PSIIAF-ANGEKLVGQSAKRQAVTNPSNTIYAVKRLIGRNFTDPMVKKDQDIVPYNIVKADNGDAWVEADSNKYSPSQISAFILQKMKETAENYLGEKVTQ 136          
The following BLAST results are available for this feature:
BLAST of CN189093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_PELUB1.446e-2039.72Chaperone protein dnaK OS=Pelagibacter ubique GN=d... [more]
DNAK_RHIEC1.889e-2044.68Chaperone protein dnaK OS=Rhizobium etli (strain C... [more]
DNAK_RHIE61.889e-2044.68Chaperone protein dnaK OS=Rhizobium etli (strain C... [more]
DNAK_NITWN1.889e-2043.07Chaperone protein dnaK OS=Nitrobacter winogradskyi... [more]
DNAK_NITHX1.889e-2043.07Chaperone protein dnaK OS=Nitrobacter hamburgensis... [more]
HSP71_TRYCR2.467e-2041.83Heat shock 70 kDa protein, mitochondrial OS=Trypan... [more]
DNAK_RHILW2.467e-2044.68Chaperone protein dnaK OS=Rhizobium leguminosarum ... [more]
DNAK_RHILE2.467e-2044.68Chaperone protein dnaK OS=Rhizobium leguminosarum ... [more]
DNAK_RHIL32.467e-2044.68Chaperone protein dnaK OS=Rhizobium leguminosarum ... [more]
DNAK_RICAH3.222e-2041.96Chaperone protein dnaK OS=Rickettsia akari (strain... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001E23_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001E23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189093 ID=CN189093; Name=CN189093; organism=Citrus sinensis; type=EST; length=678bp
CCAGAATGTNCATCCACAGCTAAAGAAGCACAAGAACAAGCAATACCAAA
CCCATTGGAGAAATATGAGCAGCTTTGTGAGCTCAGTCGTGCTTATCCAT
TGGCTAAGACTTCTGCCTCTTCCGTCAGCCAGGGATGCAGGGAGTTCTTG
AAACTTGCCAACAAGGTTGTAAGTCCAGAACCCAAATTTGTTCCAGCAAT
GCATCACTGTCTAGTCTCATCTATGAGTTTGGCACGCAATTTCAGTTCTA
AATCTCAGGGAAATGTTCTTGGCATTGATCTTGGAACTACATATTCTCGT
GTTGCAGTTATGCAAGGAGAAGATCCCGTGGTGATTGAAGAGGTAGAAGG
TGGCAGATATACTAAGAAGTCATTTCGATCGATGCCTTCAGTAGTGTTCT
TTAAACCCAATGGGGAGTCATGGGTCGGTAGACAAGCAAATATGATGACA
TCTCTGTACCCATCCCGCGCACTGTTTGATACCAAACATTTGGTGGGTAC
AGTGTATGATAGTAGTAAAGTTCAAACAAGTCTCTACCCGAAGATTGTAA
GGGGTTTTAAAGGAGAGGCATGGGTGGAGACGGAATTCGGCATATTCTCT
CCGGCTAAGATACAAGCATTCATCTTAGCCAAAATGAGAGCAATTGGCGA
AGTTTATTTGAAAGAGTCTGCTACAAAG
back to top