CN189093

Overview
NameCN189093
Unique NameCN189093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: DNAK_PELPD (Chaperone protein dnaK OS=Pelobacter propionicus (strain DSM 2379) GN=dnaK PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.222e-20
Identity = 57/140 (40.71%), Postives = 78/140 (55.71%), Query Frame = 1
Query:  265 VLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDSSKVQTSLYP---KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESAT 675
            V+GIDLGTT S VA+M+G +P+VI   EG R T       PS+V F  NGE  VG+QA       P   L+  K L+G  +D+  V+  +     KIV+    +AWVE     +SP +I AF+L KM+   E YL ++ T
Sbjct:    4 VIGIDLGTTNSCVAIMEGGEPIVIANSEGSRTT-------PSIVAFADNGERLVGQQAKRQAVTNPENTLYAIKRLIGRKFDTEAVKRDIAISPFKIVKADNNDAWVEARGKRYSPPEISAFVLQKMKQTAEDYLGQTVT 136          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: DNAK_BEII9 (Chaperone protein dnaK OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=dnaK PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.222e-20
Identity = 60/143 (41.96%), Postives = 79/143 (55.24%), Query Frame = 1
Query:  259 GNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDS--SKVQTSLYP-KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATK 678
            G V+GIDLGTT S VAVM+G  P VIE  EG R T       PS+V F  +GE  VG+ A       P R  F  K L+G  ++   +K    L P KI +   G+AWVE +   +SP++I AFIL KM+   E YL +  ++
Sbjct:    2 GKVIGIDLGTTNSCVAVMEGTTPKVIENAEGARTT-------PSIVAFTDDGERLVGQPAKRQGVTNPERTFFAIKRLIGRTFEDPMTKKDIGLVPYKITKAPNGDAWVEADGKPYSPSQISAFILQKMKETAESYLGQPVSQ 137          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: DNAK_AGRT5 (Chaperone protein dnaK OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=dnaK PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.222e-20
Identity = 61/141 (43.26%), Postives = 80/141 (56.74%), Query Frame = 1
Query:  265 VLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDSSKVQ--TSLYP-KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATK 678
            V+GIDLGTT S VAVM G+D  VIE  EG R T       PS+V F  +GE  VG+ A       P+  LF  K L+G  Y+   V+   +L P +IV+G  G+AWV+ +   +SP++I A IL KM+   E YL E   K
Sbjct:    4 VIGIDLGTTNSCVAVMDGKDTKVIENAEGARTT-------PSMVAFSDDGERLVGQPAKRQAVTNPTNTLFAVKRLIGRRYEDPTVEKDKALVPFEIVKGDNGDAWVKAQDKNYSPSQISAMILQKMKETAESYLGEKVEK 137          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: DNAK_AGRVS (Chaperone protein dnaK OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=dnaK PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.208e-20
Identity = 61/141 (43.26%), Postives = 78/141 (55.32%), Query Frame = 1
Query:  265 VLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDSSKVQTS--LYP-KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATK 678
            V+GIDLGTT S V+VM G+D  VIE  EG R T       PS+V F  +GE  VG+ A       P+  LF  K L+G  Y+   V+    L P  I++G  G+AWVE +   +SPA+I A IL KM+   E YL E   K
Sbjct:    4 VIGIDLGTTNSCVSVMDGKDAKVIENSEGARTT-------PSMVAFSDDGERLVGQPAKRQAVTNPTNTLFAVKRLIGRRYEDPTVEKDKGLVPFPIIKGDNGDAWVEAQGKGYSPAQISAMILQKMKETAEAYLGEKVEK 137          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: DNAK_ACICJ (Chaperone protein dnaK OS=Acidiphilium cryptum (strain JF-5) GN=dnaK PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.208e-20
Identity = 57/141 (40.43%), Postives = 80/141 (56.74%), Query Frame = 1
Query:  265 VLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDSSKVQTS---LYPKIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATK 678
            V+GIDLGTT S VA+M+G+D  VIE  EG R T       PS+V F  + E  VG+ A       P+  L+  K L+G  YD   V+     +   IVRG  G+AWVE+    ++P++I +F+L KM+   E YL E+ T+
Sbjct:    4 VIGIDLGTTNSCVAIMEGKDVRVIENSEGARTT-------PSMVAFSESNERLVGQSAKRQAVTNPTNTLYAVKRLIGRRYDDPTVEKDKGLVSYNIVRGDNGDAWVESRGQRYAPSQISSFVLTKMKETAEAYLGEAVTQ 137          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: DNAK_RHOPS (Chaperone protein dnaK OS=Rhodopseudomonas palustris (strain BisB5) GN=dnaK PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.495e-20
Identity = 59/137 (43.07%), Postives = 76/137 (55.47%), Query Frame = 1
Query:  259 GNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDSSKVQ--TSLYP-KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYL 660
            G V+GIDLGTT S VAVM G++  VIE  EG        R+ PS+V    +GE  VG+ A       P R  F  K LVG  YD   V+    L P KIV+   G+AWVE +   +SP+++ AFIL KM+   E +L
Sbjct:    2 GKVIGIDLGTTNSCVAVMDGKNSKVIENAEG-------MRTTPSIVAISDDGERLVGQPAKRQAVTNPERTFFAVKRLVGRRYDDPMVEKDKKLVPYKIVKASNGDAWVEADGQTYSPSQVSAFILQKMKETAEAHL 131          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: DNAK_OLICO (Chaperone protein dnaK OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=dnaK PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.495e-20
Identity = 59/137 (43.07%), Postives = 76/137 (55.47%), Query Frame = 1
Query:  259 GNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDSSKV--QTSLYP-KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYL 660
            G V+GIDLGTT S VAVM G+ P VIE  EG        R+ PS+V    + E  VG+ A       P + +F  K L+G  YD   V     L P KIV+   G+AWVE +  I+SP++I AFIL KM+   E +L
Sbjct:    2 GKVIGIDLGTTNSCVAVMDGKSPRVIENAEG-------MRTTPSIVALTDDDERLVGQPAKRQAVTNPEKTIFAVKRLIGRRYDDPTVAKDKDLVPYKIVKASNGDAWVEADGKIYSPSQISAFILQKMKETAEAHL 131          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: DNAK_SPHWW (Chaperone protein dnaK OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=dnaK PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.177e-20
Identity = 59/141 (41.84%), Postives = 79/141 (56.03%), Query Frame = 1
Query:  265 VLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDS--SKVQTSLYP-KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATK 678
            V+GIDLGTT S VAVM+G  P VIE  EG R T       PS+V F  +GE  +G+ A       P   +F  K L+G  +D   ++  T L P  IV+G  G+AWV+     +SP++I AF L KM+   E YL E+ T+
Sbjct:    4 VIGIDLGTTNSCVAVMEGGKPKVIENAEGARTT-------PSIVAFAKDGERLIGQPAKRQAVTNPDNTIFAVKRLIGRRFDDPITRKDTELVPYHIVKGPNGDAWVQAGGEDYSPSQISAFTLQKMKETAESYLGETVTQ 137          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: DNAK_GLUOX (Chaperone protein dnaK OS=Gluconobacter oxydans GN=dnaK PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.177e-20
Identity = 59/141 (41.84%), Postives = 80/141 (56.74%), Query Frame = 1
Query:  265 VLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDSSKVQTS--LYP-KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATK 678
            V+GIDLGTT S VAV +G++  VIE  EG R T       PS+V F  NGE  VG+ A       P+  L+  K L+G  YD   VQ    + P  IVRG  G+AWVE     ++P++I A++L KM+   E YL E+ ++
Sbjct:    4 VIGIDLGTTNSCVAVREGDETKVIENSEGARTT-------PSMVAFTDNGERLVGQAAKRQAVTNPANTLYAVKRLIGRRYDDPTVQKDKEMVPYAIVRGDNGDAWVEARGEKYAPSQIAAYVLGKMKETAESYLGETVSQ 137          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: DNAK_ZYMMO (Chaperone protein dnaK OS=Zymomonas mobilis GN=dnaK PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.224e-19
Identity = 60/140 (42.86%), Postives = 77/140 (55.00%), Query Frame = 1
Query:  259 GNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDS--SKVQTSLYP-KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKES 669
            G V+GIDLGTT S VAVM+G  P VIE  EG R T       PS+V F  + E  +G+ A           +F  K L+G  +D   +K  T L P  IVRG  G+AWV+     +SP++I AFIL KM+   E YL E+
Sbjct:    2 GKVIGIDLGTTNSCVAVMEGGQPKVIENAEGARTT-------PSIVAFTKDSERLIGQPAKRQAVTNSENTIFAVKRLIGRRFDDPVTKRDTELVPYHIVRGSNGDAWVKAGGQDYSPSQISAFILQKMKETAESYLGET 134          
The following BLAST results are available for this feature:
BLAST of CN189093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_PELPD3.222e-2040.71Chaperone protein dnaK OS=Pelobacter propionicus (... [more]
DNAK_BEII93.222e-2041.96Chaperone protein dnaK OS=Beijerinckia indica subs... [more]
DNAK_AGRT53.222e-2043.26Chaperone protein dnaK OS=Agrobacterium tumefacien... [more]
DNAK_AGRVS4.208e-2043.26Chaperone protein dnaK OS=Agrobacterium vitis (str... [more]
DNAK_ACICJ4.208e-2040.43Chaperone protein dnaK OS=Acidiphilium cryptum (st... [more]
DNAK_RHOPS5.495e-2043.07Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_OLICO5.495e-2043.07Chaperone protein dnaK OS=Oligotropha carboxidovor... [more]
DNAK_SPHWW7.177e-2041.84Chaperone protein dnaK OS=Sphingomonas wittichii (... [more]
DNAK_GLUOX7.177e-2041.84Chaperone protein dnaK OS=Gluconobacter oxydans GN... [more]
DNAK_ZYMMO1.224e-1942.86Chaperone protein dnaK OS=Zymomonas mobilis GN=dna... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001E23_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001E23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189093 ID=CN189093; Name=CN189093; organism=Citrus sinensis; type=EST; length=678bp
CCAGAATGTNCATCCACAGCTAAAGAAGCACAAGAACAAGCAATACCAAA
CCCATTGGAGAAATATGAGCAGCTTTGTGAGCTCAGTCGTGCTTATCCAT
TGGCTAAGACTTCTGCCTCTTCCGTCAGCCAGGGATGCAGGGAGTTCTTG
AAACTTGCCAACAAGGTTGTAAGTCCAGAACCCAAATTTGTTCCAGCAAT
GCATCACTGTCTAGTCTCATCTATGAGTTTGGCACGCAATTTCAGTTCTA
AATCTCAGGGAAATGTTCTTGGCATTGATCTTGGAACTACATATTCTCGT
GTTGCAGTTATGCAAGGAGAAGATCCCGTGGTGATTGAAGAGGTAGAAGG
TGGCAGATATACTAAGAAGTCATTTCGATCGATGCCTTCAGTAGTGTTCT
TTAAACCCAATGGGGAGTCATGGGTCGGTAGACAAGCAAATATGATGACA
TCTCTGTACCCATCCCGCGCACTGTTTGATACCAAACATTTGGTGGGTAC
AGTGTATGATAGTAGTAAAGTTCAAACAAGTCTCTACCCGAAGATTGTAA
GGGGTTTTAAAGGAGAGGCATGGGTGGAGACGGAATTCGGCATATTCTCT
CCGGCTAAGATACAAGCATTCATCTTAGCCAAAATGAGAGCAATTGGCGA
AGTTTATTTGAAAGAGTCTGCTACAAAG
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