CN189093

Overview
NameCN189093
Unique NameCN189093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: DNAK_SYNAS (Chaperone protein dnaK OS=Syntrophus aciditrophicus (strain SB) GN=dnaK PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.309e-18
Identity = 58/145 (40.00%), Postives = 77/145 (53.10%), Query Frame = 1
Query:  259 GNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDSSKVQTSLYPKIVRGFK------GEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESAT 675
            G ++GIDLGTT S VAVM+G DPVVI   EG R T       PS+V F  +GE  VG+ A           ++  K L+G  Y+S +VQ   Y K +  FK      G+A +E     +SPA+I + +L KM+   E YL E  T
Sbjct:    2 GRIIGIDLGTTNSCVAVMEGGDPVVIANQEGNRTT-------PSIVAFTESGERLVGQVAKRQAVTNSENTVYAVKRLIGRKYNSKEVQ---YDKSISPFKISEAPNGDAQIEVRGRAYSPAEISSMVLVKMKQTAEDYLGEKIT 136          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: DNAK_RHOS4 (Chaperone protein dnaK OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dnaK PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.309e-18
Identity = 61/141 (43.26%), Postives = 77/141 (54.61%), Query Frame = 1
Query:  265 VLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDSSKVQTS--LYP-KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATK 678
            V+GIDLGTT S VA+M G  P VIE  EG R T       PS+V F  + E  VG+ A       PS  +F  K L+G     ++V+    L P  IV G  G+AWVE     +SP++I AFIL KM+   E YL ES T+
Sbjct:    4 VIGIDLGTTNSCVAIMDGAQPRVIENSEGARTT-------PSIVGFT-DSERLVGQPAKRQAVTNPSNTVFAVKRLIGRRVGDAEVEKDKKLVPYSIVNGGNGDAWVEVRGEKYSPSQISAFILQKMKETAEAYLGESVTQ 136          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: DNAK_METFK (Chaperone protein dnaK OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=dnaK PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.309e-18
Identity = 58/143 (40.56%), Postives = 75/143 (52.45%), Query Frame = 1
Query:  259 GNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDSSKVQ--TSLYP-KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATK 678
            G ++GIDLGTT S VAVM+G  P VIE  EG R T       PSV+ ++ +GE  VG  A       P   LF  K L+G  +D  +VQ    L P  I +   G+AWVE      +P +I A +L KM+   E YL E  T+
Sbjct:    2 GKIIGIDLGTTNSCVAVMEGGKPRVIENAEGARTT-------PSVIAYQEDGEILVGAPAKRQAVTNPKNTLFAVKRLIGRRFDEKEVQKDIGLMPYTITKADNGDAWVEVRGQKLAPPQISAEVLRKMKKTAEDYLGEEVTE 137          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: DNAK_MESSB (Chaperone protein dnaK OS=Mesorhizobium sp. (strain BNC1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.309e-18
Identity = 59/141 (41.84%), Postives = 75/141 (53.19%), Query Frame = 1
Query:  265 VLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDSSKVQ--TSLYP-KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATK 678
            V+GIDLGTT S VAVM G+D  VIE  EG R T       PS+V F  + E  VG+ A       P    F  K L+G  ++   V+    L P KIV+   G+AWVE+    +SP++I A IL KM+   E YL E   K
Sbjct:    4 VIGIDLGTTNSCVAVMDGKDAKVIENAEGARTT-------PSIVAFTDSDERLVGQPAKRQAVTNPENTFFAIKRLIGRRFEDPMVEKDKKLVPYKIVKADNGDAWVESHGTKYSPSQISAMILQKMKETAESYLGEKVEK 137          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: DNAK_SILPO (Chaperone protein dnaK OS=Silicibacter pomeroyi GN=dnaK PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.015e-18
Identity = 60/143 (41.96%), Postives = 77/143 (53.85%), Query Frame = 1
Query:  259 GNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDSSKV--QTSLYP-KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATK 678
            G V+GIDLGTT S VA+M G  P VIE  EG R T       PS+V F  + E  VG+ A       PS  +F  K L+G   D ++V     + P  IV G  G+AWVE +   +SP++I A IL KM+   E YL E  T+
Sbjct:    2 GKVIGIDLGTTNSCVAIMDGAQPKVIENSEGARTT-------PSIVAF-TDEERLVGQPAKRQAVTNPSNTIFGVKRLIGRRVDDAEVTKDKKMVPFTIVNGGNGDAWVEAKGEKYSPSQISAVILGKMKETAESYLGEEVTQ 136          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: DNAK_SHISS (Chaperone protein dnaK OS=Shigella sonnei (strain Ss046) GN=dnaK PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.015e-18
Identity = 55/143 (38.46%), Postives = 77/143 (53.85%), Query Frame = 1
Query:  259 GNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDSSKVQ--TSLYP-KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATK 678
            G ++GIDLGTT S VA+M G  P V+E  EG R T       PS++ +  +GE+ VG+ A       P   LF  K L+G  +   +VQ   S+ P KI+    G+AWVE +    +P +I A +L KM+   E YL E  T+
Sbjct:    2 GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTT-------PSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTE 137          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: DNAK_SHIDS (Chaperone protein dnaK OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=dnaK PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.015e-18
Identity = 55/143 (38.46%), Postives = 77/143 (53.85%), Query Frame = 1
Query:  259 GNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDSSKVQ--TSLYP-KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATK 678
            G ++GIDLGTT S VA+M G  P V+E  EG R T       PS++ +  +GE+ VG+ A       P   LF  K L+G  +   +VQ   S+ P KI+    G+AWVE +    +P +I A +L KM+   E YL E  T+
Sbjct:    2 GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTT-------PSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTE 137          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: DNAK_SHIBS (Chaperone protein dnaK OS=Shigella boydii serotype 4 (strain Sb227) GN=dnaK PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.015e-18
Identity = 55/143 (38.46%), Postives = 77/143 (53.85%), Query Frame = 1
Query:  259 GNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDSSKVQ--TSLYP-KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATK 678
            G ++GIDLGTT S VA+M G  P V+E  EG R T       PS++ +  +GE+ VG+ A       P   LF  K L+G  +   +VQ   S+ P KI+    G+AWVE +    +P +I A +L KM+   E YL E  T+
Sbjct:    2 GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTT-------PSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTE 137          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: DNAK_RICPR (Chaperone protein dnaK OS=Rickettsia prowazekii GN=dnaK PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.015e-18
Identity = 58/143 (40.56%), Postives = 79/143 (55.24%), Query Frame = 1
Query:  259 GNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDSSKVQ--TSLYP-KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATK 678
            G V+GIDLGTT S VAVM+G++P VI+  EG R T       PS++ F  N E  VG+ A       P   ++  K L+G  +    V+    L P  IV+   G+AWVE +   +SP++I AFIL KM+   E YL E  T+
Sbjct:    2 GKVIGIDLGTTNSCVAVMEGKEPKVIDNAEGERTT-------PSIIAF-ANSERLVGQPAKRQAVTNPRNTIYAVKRLIGRNFTDPMVRKDQGLVPYNIVKADNGDAWVEADNHKYSPSQISAFILQKMKETAENYLGEKVTQ 136          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: DNAK_RHOS5 (Chaperone protein dnaK OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=dnaK PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.015e-18
Identity = 61/141 (43.26%), Postives = 77/141 (54.61%), Query Frame = 1
Query:  265 VLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDSSKVQTS--LYP-KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATK 678
            V+GIDLGTT S VA+M G  P VIE  EG R T       PS+V F  + E  VG+ A       PS  +F  K L+G     ++V+    L P  IV G  G+AWVE     +SP++I AFIL KM+   E YL ES T+
Sbjct:    4 VIGIDLGTTNSCVAIMDGAQPRVIENSEGARTT-------PSIVGFT-DSERLVGQPAKRQAVTNPSNTVFAVKRLIGRRVGDAEVEKDKKLVPYAIVNGGNGDAWVEVRGEKYSPSQISAFILQKMKETAEAYLGESVTQ 136          
The following BLAST results are available for this feature:
BLAST of CN189093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_SYNAS2.309e-1840.00Chaperone protein dnaK OS=Syntrophus aciditrophicu... [more]
DNAK_RHOS42.309e-1843.26Chaperone protein dnaK OS=Rhodobacter sphaeroides ... [more]
DNAK_METFK2.309e-1840.56Chaperone protein dnaK OS=Methylobacillus flagella... [more]
DNAK_MESSB2.309e-1841.84Chaperone protein dnaK OS=Mesorhizobium sp. (strai... [more]
DNAK_SILPO3.015e-1841.96Chaperone protein dnaK OS=Silicibacter pomeroyi GN... [more]
DNAK_SHISS3.015e-1838.46Chaperone protein dnaK OS=Shigella sonnei (strain ... [more]
DNAK_SHIDS3.015e-1838.46Chaperone protein dnaK OS=Shigella dysenteriae ser... [more]
DNAK_SHIBS3.015e-1838.46Chaperone protein dnaK OS=Shigella boydii serotype... [more]
DNAK_RICPR3.015e-1840.56Chaperone protein dnaK OS=Rickettsia prowazekii GN... [more]
DNAK_RHOS53.015e-1843.26Chaperone protein dnaK OS=Rhodobacter sphaeroides ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001E23_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001E23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189093 ID=CN189093; Name=CN189093; organism=Citrus sinensis; type=EST; length=678bp
CCAGAATGTNCATCCACAGCTAAAGAAGCACAAGAACAAGCAATACCAAA
CCCATTGGAGAAATATGAGCAGCTTTGTGAGCTCAGTCGTGCTTATCCAT
TGGCTAAGACTTCTGCCTCTTCCGTCAGCCAGGGATGCAGGGAGTTCTTG
AAACTTGCCAACAAGGTTGTAAGTCCAGAACCCAAATTTGTTCCAGCAAT
GCATCACTGTCTAGTCTCATCTATGAGTTTGGCACGCAATTTCAGTTCTA
AATCTCAGGGAAATGTTCTTGGCATTGATCTTGGAACTACATATTCTCGT
GTTGCAGTTATGCAAGGAGAAGATCCCGTGGTGATTGAAGAGGTAGAAGG
TGGCAGATATACTAAGAAGTCATTTCGATCGATGCCTTCAGTAGTGTTCT
TTAAACCCAATGGGGAGTCATGGGTCGGTAGACAAGCAAATATGATGACA
TCTCTGTACCCATCCCGCGCACTGTTTGATACCAAACATTTGGTGGGTAC
AGTGTATGATAGTAGTAAAGTTCAAACAAGTCTCTACCCGAAGATTGTAA
GGGGTTTTAAAGGAGAGGCATGGGTGGAGACGGAATTCGGCATATTCTCT
CCGGCTAAGATACAAGCATTCATCTTAGCCAAAATGAGAGCAATTGGCGA
AGTTTATTTGAAAGAGTCTGCTACAAAG
back to top