CN189078

Overview
NameCN189078
Unique NameCN189078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UBC7_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC7 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.263e-25
Identity = 56/148 (37.84%), Postives = 86/148 (58.11%), Query Frame = -1
Query:  381 ASKRINKELKDLQKDPPAS*SAGPVADD-MFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 782
            A KR+ KEL+ L KD P    AGP +++ +F W   I GP D+P+A GVF   + FP DYP  PPK+ F   + HPNI  NG +C+ IL             +E+WSP  ++ K+LLS+ S+L++PN +     +   +++ +R ++E
Sbjct:    5 AQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFE 152          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UB2G2_BOVIN (Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.263e-25
Identity = 59/157 (37.58%), Postives = 88/157 (56.05%), Query Frame = -1
Query:  354 ASKRINKELKDLQKDPPAS*SAGPVADD-MFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQK 782
            A KR+  E K L  +PP    AGP+ ++  F W+A IMGP D+ F  GVF   + FP DYP  PPK+ F  ++FHPNI  +G +C+ IL              E+WSP  ++ K+LLS+ S+L +PN +     + + M++ DR ++   A+   QK
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKVAKQIVQK 161          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UBC7_SCHPO (Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosaccharomyces pombe GN=ubc3 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 4.262e-25
Identity = 56/158 (35.44%), Postives = 87/158 (55.06%), Query Frame = -1
Query:  354 MASKRINKELKDLQKDPPAS*SAGPV-ADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQK 785
            MA +R+ KE K+L ++ P   +AGP   DD F W   I GP  +PF GG++  ++ FP DYP  PP + F  + FHPN+  +G++C+ IL              E+WSP  ++ K+LLS+ S+L +PN +     +   M++ DR +Y    R   +K
Sbjct:    5 MALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSMLAEPNDESGANIDACKMWREDREEYCRVVRRLARK 162          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UB2G2_PONAB (Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.262e-25
Identity = 59/157 (37.58%), Postives = 88/157 (56.05%), Query Frame = -1
Query:  354 ASKRINKELKDLQKDPPAS*SAGPVADD-MFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQK 782
            A KR+  E K L  +PP    AGP+ ++  F W+A IMGP D+ F  GVF   + FP DYP  PPK+ F  ++FHPNI  +G +C+ IL              E+WSP  ++ K+LLS+ S+L +PN +     + + M++ DR ++   A+   QK
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 161          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UB2G2_MOUSE (Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus GN=Ube2g2 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.262e-25
Identity = 59/157 (37.58%), Postives = 88/157 (56.05%), Query Frame = -1
Query:  354 ASKRINKELKDLQKDPPAS*SAGPVADD-MFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQK 782
            A KR+  E K L  +PP    AGP+ ++  F W+A IMGP D+ F  GVF   + FP DYP  PPK+ F  ++FHPNI  +G +C+ IL              E+WSP  ++ K+LLS+ S+L +PN +     + + M++ DR ++   A+   QK
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 161          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UB2G2_HUMAN (Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens GN=UBE2G2 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.262e-25
Identity = 59/157 (37.58%), Postives = 88/157 (56.05%), Query Frame = -1
Query:  354 ASKRINKELKDLQKDPPAS*SAGPVADD-MFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQK 782
            A KR+  E K L  +PP    AGP+ ++  F W+A IMGP D+ F  GVF   + FP DYP  PPK+ F  ++FHPNI  +G +C+ IL              E+WSP  ++ K+LLS+ S+L +PN +     + + M++ DR ++   A+   QK
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 161          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.240e-24
Identity = 53/134 (39.55%), Postives = 83/134 (61.94%), Query Frame = -1
Query:  381 SKRINKELKDLQKDPPAS*SAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 779
            +KR+  EL  L        SA P +D ++ HW  TI GPSD+ + G  F +S+ FP +YP+ PP + F + ++HPN++ +G+ICLDILK++WS    +  +LLS+ SLL +PN   PL  + A ++  D  +Y+
Sbjct:   30 TKRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIEYK 163          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UB2G1_RAT (Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norvegicus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.619e-24
Identity = 51/140 (36.43%), Postives = 84/140 (60.00%), Query Frame = -1
Query:  393 INKELKDLQKDPPAS*SAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDR 770
            + ++L +L K+P    SAG + D D++ W+  I+GP D+ + GGVF   + FP DYP +PPK+ F T+++HPN++ NG +C+ IL             +E+W P  T+  +++S+ S+L DPN D P   + A  ++ DR
Sbjct:   10 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 149          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UB2G1_MOUSE (Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.619e-24
Identity = 51/140 (36.43%), Postives = 84/140 (60.00%), Query Frame = -1
Query:  393 INKELKDLQKDPPAS*SAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDR 770
            + ++L +L K+P    SAG + D D++ W+  I+GP D+ + GGVF   + FP DYP +PPK+ F T+++HPN++ NG +C+ IL             +E+W P  T+  +++S+ S+L DPN D P   + A  ++ DR
Sbjct:   10 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 149          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UB2G1_HUMAN (Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.619e-24
Identity = 51/140 (36.43%), Postives = 84/140 (60.00%), Query Frame = -1
Query:  393 INKELKDLQKDPPAS*SAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDR 770
            + ++L +L K+P    SAG + D D++ W+  I+GP D+ + GGVF   + FP DYP +PPK+ F T+++HPN++ NG +C+ IL             +E+W P  T+  +++S+ S+L DPN D P   + A  ++ DR
Sbjct:   10 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 149          
The following BLAST results are available for this feature:
BLAST of CN189078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 264
Match NameE-valueIdentityDescription
UBC7_YEAST3.263e-2537.84Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UB2G2_BOVIN3.263e-2537.58Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus G... [more]
UBC7_SCHPO4.262e-2535.44Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosa... [more]
UB2G2_PONAB4.262e-2537.58Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii... [more]
UB2G2_MOUSE4.262e-2537.58Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus... [more]
UB2G2_HUMAN4.262e-2537.58Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens... [more]
UBC11_SCHPO1.240e-2439.55Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UB2G1_RAT1.619e-2436.43Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norve... [more]
UB2G1_MOUSE1.619e-2436.43Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus... [more]
UB2G1_HUMAN1.619e-2436.43Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001E14_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189078 ID=CN189078; Name=CN189078; organism=Citrus sinensis; type=EST; length=785bp
TTTCAAACCATGGGCAACTCTTTTTTCAAATGGGAAGTTGGGAATCATAC
AGGAATGGAGAGGTTACGTTCATTACTATAAATCACATTCTAGAAGCCTT
CAAATAGACCATTACCAACAATAAATAAAGGCAAAGGCAGCTCAATTCTG
CAGTAAATTATAATTTAAGTATTGAAGAACAATGCTAAATTTGAAAGTAA
CCCCACATAAAACCTTTTAACAACTTAGTAAACAAAACCAAATATCGTCT
TTTAATATCTGAAACAAACTTATTTCTATTATTTACTAATAGGACCACAA
GCCATTAATGTTCTCAGGGGCATACAGCCTAGCCCCTCTTAACCCATGGC
ATACTTCTGAGTCCAGGATCGAGCAGTAGTCTCATATTTGGCTCTGTCAG
TCTTGTACATGTGAGCAATCTCAGGCACAAGTGGGTCATCTGGGTTCGGA
TCAGTAAGTAGTGAGCAAATTGACAGAAGTACCTTGGATATTGTCAAAGC
AGGGCTCCACTGCTCCTTGAGAATGTCAAGACAGATGCTACCATTGCTGT
TGATGTTAGGGTGGAAAACCTTAGTACGGAAGGCCACCTTCGGTGGCTTG
AATGGATAATCAGGTGGGAAATGAATGGATACAAGAAATACACCCCCAGC
AAATGGGCTGTCTGATGGGCCCATAATTGTTGCTTGCCAATGGAACATGT
CATCAGCAACAGGGCCAGCGCTTCAAGAAGCAGGAGGGTCCTTCTGTAGG
TCCTTCAACTCCTTGTTGATCCGTTTTGAAGCCAT
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