CN189070

Overview
NameCN189070
Unique NameCN189070
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189070 vs. ExPASy Swiss-Prot
Match: PAP3_ORYSJ (Probable plastid-lipid-associated protein 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PAP3 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.616e-20
Identity = 49/113 (43.36%), Postives = 75/113 (66.37%), Query Frame = -1
Query:  272 FEVRSPQRVQIKFEEGILGTPQVTDSLVIPENVEFLGQKIDFSPFKGILFSVQDTGSFVAKAIFSQPPLKFFI-FNSNGQSWVLTPYLDEDFWISRADAGRVFVFIKEGSPLL 607
            F+V+SP R++++F+EG    P+++ S+ +P  V+  GQKI   P + +L  +Q   + +A +I  QPPLK  I  N+  +SW+LT YLD+D  ISR D G +F+ +KEGSPLL
Sbjct:  260 FDVQSPSRIEVQFKEGSFQPPKISSSVDLPAEVDIFGQKISLGPVQQVLNPLQQAFASIAGSISGQPPLKLPIPGNNRARSWLLTTYLDKDLRISRGDGG-LFILVKEGSPLL 371          
BLAST of CN189070 vs. ExPASy Swiss-Prot
Match: PAP3_ARATH (Probable plastid-lipid-associated protein 3, chloroplastic OS=Arabidopsis thaliana GN=PAP3 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.616e-20
Identity = 51/112 (45.54%), Postives = 71/112 (63.39%), Query Frame = -1
Query:  272 FEVRSPQRVQIKFEEGILGTPQVTDSLVIPENVEFLGQKIDFSPFKGILFSVQDTGSFVAKAIFSQPPLKFFIFNSNGQSWVLTPYLDEDFWISRADAGRVFVFIKEGSPLL 607
            FEVRSP R+++ F+EG L  P +  S+ +PE+V   GQ+I  S  K  L  +QD  + +++A+  QPPLK     + G SW+LT YLD+D  ISR D G +FV  +EGS LL
Sbjct:  264 FEVRSPSRIEVSFKEGTLKPPVIKSSVDLPESVGVFGQQISLSLLKQSLNPLQDVAANISRALSGQPPLKLPFPGNRGSSWLLTTYLDKDLRISRGDGG-LFVLAREGSSLL 374          
BLAST of CN189070 vs. ExPASy Swiss-Prot
Match: PG1_PEA (Plastoglobulin-1, chloroplastic OS=Pisum sativum GN=PG1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.215e-17
Identity = 45/112 (40.18%), Postives = 67/112 (59.82%), Query Frame = -1
Query:  272 FEVRSPQRVQIKFEEGILGTPQVTDSLVIPENVEFLGQKIDFSPFKGILFSVQDTGSFVAKAIFSQPPLKFFIFNSNGQSWVLTPYLDEDFWISRADAGRVFVFIKEGSPLL 607
            FEVRSP R+Q+ F+EG L  P++   + +PEN+   GQ++   P    L  +++  + +++ I  Q PLK  I      SW++T YLD+D  ISR D G +FV  +EGS LL
Sbjct:  246 FEVRSPTRIQVTFKEGSLQPPEIKSKIDLPENINIFGQQLSLGPLLQSLGPLENVVANISRVISGQSPLKIPIPGERTSSWLITTYLDKDLRISRGDGG-LFVLAREGSSLL 356          
The following BLAST results are available for this feature:
BLAST of CN189070 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PAP3_ORYSJ2.616e-2043.36Probable plastid-lipid-associated protein 3, chlor... [more]
PAP3_ARATH2.616e-2045.54Probable plastid-lipid-associated protein 3, chlor... [more]
PG1_PEA1.215e-1740.18Plastoglobulin-1, chloroplastic OS=Pisum sativum G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001E09_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189070 ID=CN189070; Name=CN189070; organism=Citrus sinensis; type=EST; length=607bp
TTTTTTTTTTTTTTTTTGAATTTCAAATAATTATATTTAATTGAACACAC
AAATTCAACAACTAAAACAAATTAGGGGGCCCAAAAAATTGTTTAGTATT
TACCCCCTTCCTACTTTGAAATCTACGGCACGGGTATCTAGCTGCAAATC
TAGTAACACCGAGGGTATCATTCCATTACTTGAAAATACTTAAAAAGCAC
CAACACGTTCAAGTCTTTATTCAATATTACCATACCGAAGGAGTGAACAT
TTGGGTGGGCGTTCATGGCATCAAAAGGGGGCTTCCTTCCTTGATGAAAA
CAAAAACCCTGCCAGCATCTGCCCTTGAAATCCAAAAATCTTCATCAAGG
TATGGGGTTAGCACCCATGATTGACCATTGCTGTTAAAAATAAAAAACTT
CAAAGGGGGTTGGCTAAAAATGGCCTTTGCAACAAATGAACCTGTGTCTT
GGACTGAAAAAAGTATGCCTTTGAAGGGGGAAAAATCAATCTTTTGTCCC
AAAAATTCAACATTTTCCGGTATCACTAGGGAATCAGTTACCTGAGGCGT
CCCAAGGATACCTTCCTCAAACTTGATCTGCACACGCTGGGGGCTCCGCA
CTTCAAA
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