CN189069 | Citrus Genome Database

Overview


Name	CN189069
Unique Name	CN189069
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	798

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Rind cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CN189069 vs. ExPASy Swiss-Prot
Match: S61A1_RAT (Protein transport protein Sec61 subunit alpha isoform 1 OS=Rattus norvegicus GN=Sec61a1 PE=2 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 3.740e-72
Identity = 116/176 (65.91%), Postives = 147/176 (83.52%), Query Frame = 2

Query:  155 RVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSG 682
            + L +++PF   LPE+Q  +RKI F+EKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G++I IG+++ YVM+GMYG  S++GAG  +LI +QL  AG+IV+ LDELLQKGYGLGSG
Sbjct:    4 KFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSG 178

HSP 2 Score: 55.0694 bits (131), Expect = 3.740e-72
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 3

Query:  681 GISLFIAPNICESIIWKAFSPTTINSGPGS*IRG 782
            GISLFIA NICE+I+WKAFSPTT+N+G G    G
Sbjct:  178 GISLFIATNICETIVWKAFSPTTVNTGRGMEFEG 211

BLAST of CN189069 vs. ExPASy Swiss-Prot
Match: S61A1_PONAB (Protein transport protein Sec61 subunit alpha isoform 1 OS=Pongo abelii GN=SEC61A1 PE=2 SV=3)

HSP 1 Score: 238.424 bits (607), Expect = 3.740e-72
Identity = 116/176 (65.91%), Postives = 147/176 (83.52%), Query Frame = 2

Query:  155 RVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSG 682
            + L +++PF   LPE+Q  +RKI F+EKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G++I IG+++ YVM+GMYG  S++GAG  +LI +QL  AG+IV+ LDELLQKGYGLGSG
Sbjct:    4 KFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSG 178

HSP 2 Score: 55.0694 bits (131), Expect = 3.740e-72
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 3

Query:  681 GISLFIAPNICESIIWKAFSPTTINSGPGS*IRG 782
            GISLFIA NICE+I+WKAFSPTT+N+G G    G
Sbjct:  178 GISLFIATNICETIVWKAFSPTTVNTGRGMEFEG 211

BLAST of CN189069 vs. ExPASy Swiss-Prot
Match: S61A1_MOUSE (Protein transport protein Sec61 subunit alpha isoform 1 OS=Mus musculus GN=Sec61a1 PE=2 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 3.740e-72
Identity = 116/176 (65.91%), Postives = 147/176 (83.52%), Query Frame = 2

Query:  155 RVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSG 682
            + L +++PF   LPE+Q  +RKI F+EKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G++I IG+++ YVM+GMYG  S++GAG  +LI +QL  AG+IV+ LDELLQKGYGLGSG
Sbjct:    4 KFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSG 178

HSP 2 Score: 55.0694 bits (131), Expect = 3.740e-72
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 3

Query:  681 GISLFIAPNICESIIWKAFSPTTINSGPGS*IRG 782
            GISLFIA NICE+I+WKAFSPTT+N+G G    G
Sbjct:  178 GISLFIATNICETIVWKAFSPTTVNTGRGMEFEG 211

BLAST of CN189069 vs. ExPASy Swiss-Prot
Match: S61A1_HUMAN (Protein transport protein Sec61 subunit alpha isoform 1 OS=Homo sapiens GN=SEC61A1 PE=1 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 3.740e-72
Identity = 116/176 (65.91%), Postives = 147/176 (83.52%), Query Frame = 2

Query:  155 RVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSG 682
            + L +++PF   LPE+Q  +RKI F+EKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G++I IG+++ YVM+GMYG  S++GAG  +LI +QL  AG+IV+ LDELLQKGYGLGSG
Sbjct:    4 KFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSG 178

HSP 2 Score: 55.0694 bits (131), Expect = 3.740e-72
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 3

Query:  681 GISLFIAPNICESIIWKAFSPTTINSGPGS*IRG 782
            GISLFIA NICE+I+WKAFSPTT+N+G G    G
Sbjct:  178 GISLFIATNICETIVWKAFSPTTVNTGRGMEFEG 211

BLAST of CN189069 vs. ExPASy Swiss-Prot
Match: S61A1_CANFA (Protein transport protein Sec61 subunit alpha isoform 1 OS=Canis familiaris GN=SEC61A1 PE=1 SV=3)

HSP 1 Score: 238.424 bits (607), Expect = 3.740e-72
Identity = 116/176 (65.91%), Postives = 147/176 (83.52%), Query Frame = 2

Query:  155 RVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSG 682
            + L +++PF   LPE+Q  +RKI F+EKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G++I IG+++ YVM+GMYG  S++GAG  +LI +QL  AG+IV+ LDELLQKGYGLGSG
Sbjct:    4 KFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSG 178

HSP 2 Score: 55.0694 bits (131), Expect = 3.740e-72
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 3

Query:  681 GISLFIAPNICESIIWKAFSPTTINSGPGS*IRG 782
            GISLFIA NICE+I+WKAFSPTT+N+G G    G
Sbjct:  178 GISLFIATNICETIVWKAFSPTTVNTGRGMEFEG 211

BLAST of CN189069 vs. ExPASy Swiss-Prot
Match: SC61A_DEBHA (Protein transport protein SEC61 subunit alpha OS=Debaryomyces hansenii GN=SEC61 PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 1.071e-65
Identity = 106/178 (59.55%), Postives = 144/178 (80.90%), Query Frame = 2

Query:  149 GFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSG 682
            GFRVL LV+PF PF+PEV + +RK+ F++++++T ++L IFLV S++PLYGI S+ G+DP YW+R++LASNRGT+MELGI+PIV++G+V QLL G+K+I VD + + DR     AQKL  IL+A+G+A  YV++GMYG  S LG G  +L++LQL FAGI+VI LDELLQKGYGLGSG
Sbjct:    3 GFRVLDLVKPFTPFMPEVIAPERKVAFQQRLMWTGVTLLIFLVMSEIPLYGIASSDGSDPLYWLRMMLASNRGTLMELGISPIVSAGMVFQLLQGTKLITVDMSNKNDRDQFQTAQKLFAILLAVGQATVYVLTGMYGPPSSLGTGVCLLLVLQLVFAGIVVILLDELLQKGYGLGSG 180

HSP 2 Score: 47.7506 bits (112), Expect = 1.071e-65
Identity = 20/34 (58.82%), Postives = 24/34 (70.59%), Query Frame = 3

Query:  681 GISLFIAPNICESIIWKAFSPTTINSGPGS*IRG 782
            GISLF A N+CE + WKAF+PTT N G G+   G
Sbjct:  180 GISLFTATNVCEQVFWKAFAPTTSNIGKGTEFEG 213

BLAST of CN189069 vs. ExPASy Swiss-Prot
Match: SC61A_NEUCR (Protein transport protein SEC61 subunit alpha OS=Neurospora crassa GN=sec-61 PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 2.376e-65
Identity = 105/176 (59.66%), Postives = 140/176 (79.55%), Query Frame = 2

Query:  155 RVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSG 682
            R L LV+PF+PFLPEVQ  + KIPF +K+++T ++L IFLV SQ+PLYGI S+  +DP YW+R+++ASNRGT+MELGITPI++SG+V QLLAG+ +I+V+ +++ DR L   AQKL  ++++IG A  YV +G+YG  S LGAG   L+ILQL  AG+IVI LDELLQKGYGLGSG
Sbjct:    5 RFLDLVKPFVPFLPEVQQPETKIPFNQKLMWTGLTLLIFLVMSQMPLYGIVSSDTSDPLYWLRMMMASNRGTLMELGITPIISSGMVFQLLAGTHMIDVNLDLKADRELYQTAQKLFAVILSIGTATVYVFTGLYGPPSDLGAGIVFLLILQLVVAGMIVILLDELLQKGYGLGSG 180

HSP 2 Score: 53.9138 bits (128), Expect = 2.376e-65
Identity = 24/29 (82.76%), Postives = 27/29 (93.10%), Query Frame = 3

Query:  681 GISLFIAPNICESIIWKAFSPTTINSGPG 767
            GISLFIA NICESI+WKAFSPT+IN+G G
Sbjct:  180 GISLFIATNICESIMWKAFSPTSINTGRG 208

BLAST of CN189069 vs. ExPASy Swiss-Prot
Match: SC61A_YARLI (Protein transport protein SEC61 subunit alpha OS=Yarrowia lipolytica GN=SEC61 PE=3 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 5.267e-65
Identity = 101/178 (56.74%), Postives = 141/178 (79.21%), Query Frame = 2

Query:  149 GFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSG 682
            G R L LV+PF PFLPEVQ+ +RK+PF +K+++T ++L IFLV S++PLYGI+S+  +D  YW+R++LASNRG++MELGITPIV+SG+V QLL G+++IEV+ +++ DR L   AQKL  I++++G+A  YV++GMYG    LG G  +L+I QL  A ++VI LDELLQKGYGLGSG
Sbjct:    3 GVRFLDLVKPFTPFLPEVQAPERKVPFNQKIMWTAVTLMIFLVMSEIPLYGINSSDKSDALYWLRMMLASNRGSLMELGITPIVSSGMVFQLLGGTQLIEVNMDLKSDRELYQTAQKLFAIILSLGQATVYVLTGMYGPPKDLGVGVCLLLIFQLVLAALVVILLDELLQKGYGLGSG 180

HSP 2 Score: 51.6026 bits (122), Expect = 5.267e-65
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 3

Query:  681 GISLFIAPNICESIIWKAFSPTTINSGPG 767
            GISLFIA NICE I WKAF+PTT+N G G
Sbjct:  180 GISLFIATNICEQIFWKAFAPTTVNKGRG 208

BLAST of CN189069 vs. ExPASy Swiss-Prot
Match: SC61A_CANAL (Protein transport protein SEC61 subunit alpha OS=Candida albicans GN=SEC61 PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 9.760e-64
Identity = 109/178 (61.24%), Postives = 141/178 (79.21%), Query Frame = 2

Query:  149 GFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSG 682
            GFRVL LV+PF PFLPEV + +RK+ F+++V++T+I+L IFLV S++PLYGI S+  +DP +W+R++LASNRGT+MELGI+PIV+SG++ QLL G+KII VD   + DR     AQKLL IL+A+G+A  YV++GMYG  S LG G   L+ILQL FA  IVI LDELLQKGYGLGSG
Sbjct:    3 GFRVLDLVKPFSPFLPEVIAPERKVQFQQRVMWTIITLLIFLVMSEIPLYGIASSDSSDPLFWLRMMLASNRGTLMELGISPIVSSGMLFQLLQGTKIIHVDMQNKNDRETFQTAQKLLAILLAVGQATVYVLTGMYGPPSSLGVGVCSLLILQLVFASTIVILLDELLQKGYGLGSG 180

HSP 2 Score: 42.743 bits (99), Expect = 9.760e-64
Identity = 17/30 (56.67%), Postives = 21/30 (70.00%), Query Frame = 3

Query:  681 GISLFIAPNICESIIWKAFSPTTINSGPGS 770
            G+SLF A N CE + WKAF+PTT  S  G+
Sbjct:  180 GVSLFTATNTCEQVFWKAFAPTTSTSAKGT 209

BLAST of CN189069 vs. ExPASy Swiss-Prot
Match: SC61A_HANAN (Protein transport protein SEC61 subunit alpha OS=Hansenula anomala GN=SEC61 PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.679e-63
Identity = 102/177 (57.63%), Postives = 140/177 (79.10%), Query Frame = 2

Query:  152 FRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSG 682
            FRVL LV+P   +LPEV + +RK+PF +K+++T ++L IFLV S++PLYGI S+  +DP +W+R++LASNRGT+MELGI+PIV+SG+V QLL G+++++V+   + DR     AQKL  IL++IG+A  YV++G+YG  S LG G  +L+ILQL FAGIIVI LDELLQKGYGLGSG
Sbjct:    4 FRVLDLVKPLTGYLPEVIAPERKVPFNQKLMWTGVTLLIFLVMSEIPLYGIVSSESSDPLFWLRMMLASNRGTLMELGISPIVSSGMVFQLLQGTQLLDVNLESKTDRETFQTAQKLFAILLSIGQATVYVLTGIYGRPSDLGVGVCLLLILQLVFAGIIVILLDELLQKGYGLGSG 180

HSP 2 Score: 51.6026 bits (122), Expect = 3.679e-63
Identity = 22/34 (64.71%), Postives = 26/34 (76.47%), Query Frame = 3

Query:  681 GISLFIAPNICESIIWKAFSPTTINSGPGS*IRG 782
            GISLF+A NICE I WKAF+PTT+N+G G    G
Sbjct:  180 GISLFMATNICEQIFWKAFAPTTVNNGRGDEFEG 213

The following BLAST results are available for this feature:

BLAST of CN189069 vs. ExPASy Swiss-Prot

BLAST of CN189069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50


Match Name	E-value	Identity	Description
S61A1_RAT	3.740e-72	65.91	Protein transport protein Sec61 subunit alpha isof...	[more]
S61A1_PONAB	3.740e-72	65.91	Protein transport protein Sec61 subunit alpha isof...	[more]
S61A1_MOUSE	3.740e-72	65.91	Protein transport protein Sec61 subunit alpha isof...	[more]
S61A1_HUMAN	3.740e-72	65.91	Protein transport protein Sec61 subunit alpha isof...	[more]
S61A1_CANFA	3.740e-72	65.91	Protein transport protein Sec61 subunit alpha isof...	[more]
SC61A_DEBHA	1.071e-65	59.55	Protein transport protein SEC61 subunit alpha OS=D...	[more]
SC61A_NEUCR	2.376e-65	59.66	Protein transport protein SEC61 subunit alpha OS=N...	[more]
SC61A_YARLI	5.267e-65	56.74	Protein transport protein SEC61 subunit alpha OS=Y...	[more]
SC61A_CANAL	9.760e-64	61.24	Protein transport protein SEC61 subunit alpha OS=C...	[more]
SC61A_HANAN	3.679e-63	57.63	Protein transport protein SEC61 subunit alpha OS=H...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS06_0001E08_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001E08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN189069 ID=CN189069; Name=CN189069; organism=Citrus sinensis; type=EST; length=798bp
GAGGAAGGGTTTTATAATATTTCAACGTTCAACCCTCTATCCTCCATCTT
GCATCGTTGGAGTTGGTGTTGCCACTGATTCCGAGCCTCTGCTCAAAGTC
AAAGCTTGTCGATCTATTCAGATCTGCTCATTTTTGAAAATGGGAGGAGG
ATTTAGAGTGCTGCATTTGGTGAGACCATTTCTTCCATTTTTGCCGGAGG
TTCAGTCAGCTGACAGGAAAATTCCCTTCCGAGAGAAGGTGATCTACACT
GTCATTTCACTTTTCATCTTTCTGGTATGCAGTCAGCTTCCACTTTATGG
CATCCATTCCACCACCGGTGCTGATCCCTTTTATTGGATGCGTGTTATTC
TTGCATCAAACCGGGGAACTGTGATGGAACTTGGGATTACCCCCATTGTG
ACTTCTGGACTTGTGATGCAACTCTTGGCTGGGTCCAAGATTATTGAGGT
GGATAACAATGTTCGTGAGGATCGTGCGCTCTTAAATGGGGCACAGAAGC
TGTTGGGCATCCTGATTGCTATCGGTGAGGCTGTTGCCTACGTGATGTCG
GGGATGTATGGAAGTGTCAGCCAGCTTGGTGCTGGGAATGCTATTCTCAT
AATCCTCCAACTTTGCTTTGCTGGAATCATTGTGATATGCCTGGATGAAC
TTCTGCAGAAGGGATATGGTTTGGGCTCTGGGAATCTCCCTTTTCATAGC
CCCTAACATTTGTGAAAGCATTATTTGGAAAGCTTTTAGCCCCACAACCA
TAAACAGTGGCCCGGGGAGCTGAATTCGAGGGTGCTGTTATTGCTCTG