CN189061

Overview
NameCN189061
Unique NameCN189061
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189061_ssr153 microsatellite CN189061_ssr153:153..164. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2701 contig Csv1_Contig2701:1..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL_THEFY (Transaldolase OS=Thermobifida fusca (strain YX) GN=tal PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.935e-12
Identity = 43/104 (41.35%), Postives = 60/104 (57.69%), Query Frame = 1
Query:  352 GQSPWYDNLCRPVT---DLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            G + W D++ R      +L  LIA   V GVTSNP IF KA++  +AY+ Q R+L   G  +E A   +   DI+ A  +   +Y+ T+G DG VS+EV PRLA
Sbjct:   12 GVAVWLDDISRQRLRSGNLAELIAQRNVVGVTSNPTIFAKALAEGDAYDGQLRDLAVRGVSVEEAVRLITAYDIRWAADVLRPVYEATDGVDGRVSLEVDPRLA 115          
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL_ARTS2 (Transaldolase OS=Arthrobacter sp. (strain FB24) GN=tal PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.935e-12
Identity = 45/114 (39.47%), Postives = 57/114 (50.00%), Query Frame = 1
Query:  322 TTLHDLYEQEGQSPWYDNLCR---PVTDLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            TT        G S W D+L R       L  LI    V GVT+NP+IF  AI+S   Y+    E   +G  +E   +E+   D+ DAC LF  +   T G DG VS+EV PRLA
Sbjct:    2 TTPTQQLSDAGVSIWLDDLSRGRLQTGTLRKLIEEKNVVGVTTNPSIFHAAITSGTDYDATIAEQAAAGSTVEETVFEITTTDVADACDLFAPVAAATRGVDGRVSIEVDPRLA 115          
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL1_STRCO (Transaldolase 1 OS=Streptomyces coelicolor GN=tal1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.935e-12
Identity = 41/105 (39.05%), Postives = 58/105 (55.24%), Query Frame = 1
Query:  349 EGQSPWYDNLCRPVTD---LLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            +G S W D+L R   +   L  LI +  V GVT+NP+IFQ AI S   Y +Q  +L   G  ++ A   +   D++ A  +   +YD + G DG VS+EV PRLA
Sbjct:   20 QGVSVWLDDLSRRRIESGNLAELIRTKNVVGVTTNPSIFQAAIGSGEGYEEQLADLATRGVTVDEAVRMMTTADVRAAADVLRGVYDASGGRDGRVSIEVDPRLA 124          
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL_MYCLE (Transaldolase OS=Mycobacterium leprae GN=tal PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 6.712e-12
Identity = 40/104 (38.46%), Postives = 61/104 (58.65%), Query Frame = 1
Query:  352 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            G S W D+L R      +L  LI    V GVT+NP+IFQKA ++ +AY+ Q  EL + G +++     +   D++ AC +    ++ ++G DG VS+EV PRLA
Sbjct:   17 GVSVWLDDLSRDRLQSGNLQKLIDTKSVVGVTTNPSIFQKAFANGHAYDAQIAELAKRGANVDVTVRTVTTDDVRHACDVLACEWEASHGKDGRVSIEVDPRLA 120          
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL_MYCLB (Transaldolase OS=Mycobacterium leprae (strain Br4923) GN=tal PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.712e-12
Identity = 40/104 (38.46%), Postives = 61/104 (58.65%), Query Frame = 1
Query:  352 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            G S W D+L R      +L  LI    V GVT+NP+IFQKA ++ +AY+ Q  EL + G +++     +   D++ AC +    ++ ++G DG VS+EV PRLA
Sbjct:   17 GVSVWLDDLSRDRLQSGNLQKLIDTKSVVGVTTNPSIFQKAFANGHAYDAQIAELAKRGANVDVTVRTVTTDDVRHACDVLACEWEASHGKDGRVSIEVDPRLA 120          
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL_ARTCA (Transaldolase OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=tal PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11
Identity = 43/114 (37.72%), Postives = 58/114 (50.88%), Query Frame = 1
Query:  322 TTLHDLYEQEGQSPWYDNLCRPVTD---LLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            TT      + G S W D+L R   +   L  LI    V GVT+NP+IF  AI++   Y+        +G  +E   +E+   D+ DAC LF  +   T G DG VS+EV PRLA
Sbjct:    2 TTPTQQLSEAGVSIWLDDLSRGRLETGTLRKLIEEKNVVGVTTNPSIFHAAITAGTDYDATVAAQAAAGASVEETIFEITTTDVADACDLFAPVAAATKGVDGRVSIEVDPRLA 115          
The following BLAST results are available for this feature:
BLAST of CN189061 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
TAL_THEFY3.935e-1241.35Transaldolase OS=Thermobifida fusca (strain YX) GN... [more]
TAL_ARTS23.935e-1239.47Transaldolase OS=Arthrobacter sp. (strain FB24) GN... [more]
TAL1_STRCO3.935e-1239.05Transaldolase 1 OS=Streptomyces coelicolor GN=tal1... [more]
TAL_MYCLE6.712e-1238.46Transaldolase OS=Mycobacterium leprae GN=tal PE=3 ... [more]
TAL_MYCLB6.712e-1238.46Transaldolase OS=Mycobacterium leprae (strain Br49... [more]
TAL_ARTCA3.331e-1137.72Transaldolase OS=Arthrobacter chlorophenolicus (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001E03_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189061 ID=CN189061; Name=CN189061; organism=Citrus sinensis; type=EST; length=653bp
GACGGTTTCTTCGTTTGTATCGTACTTGGTTGAAGCTTACAATCGTCGCT
CTTTATTTCTGAGTTTTTAGATTCAAGGATCCACGAGTCTTTAATGGCGA
CCATTTCGAAGCTTACAAATCCAGCTGTTTCTTCATCATCTTTGAAACCC
AGATCATCATCATCCTCACTGCCTAAATCTTTGATCAGCCTTCAAACCAA
AACTGGGTTCAATTCAAAAGTTGCATCTTCTCAGTTGACCCTCAGAAATA
ACCACCCTTTGAAGGCCTCTTTGGTTGTGAAATGTTCCCAATCTGGTGGA
AATGGAAGTAGTGCAAAGAGGACAACTCTTCATGATCTCTATGAGCAGGA
AGGGCAGAGCCCTTGGTATGATAACCTTTGCCGCCCCGTCACAGATTTGC
TTCCGCTCATTGCAAGTGGTGTTAGAGGTGTTACCAGCAACCCTGCGATT
TTCCAGAAAGCAATATCTTCATCGAATGCTTACAATGATCAATTTAGGGA
ACTTGTACAATCTGGAAAAGATATTGAAGCTGCATATTGGGAACTTGTGA
TTAAGGACATTCAAGATGCATGCAAACTTTTTGAGTCAATCTATGATGAA
ACCAATGGCGGTGATGGCTATGTTTCTGTCGAAGTTTCTCCCAGACTCGC
TGA
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