CN189058

Overview
NameCN189058
Unique NameCN189058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length538
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1827 contig Csv1_Contig1827:378..914. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN189058 vs. ExPASy Swiss-Prot
Match: IF1A_DICDI (Eukaryotic translation initiation factor 1A OS=Dictyostelium discoideum GN=eif1a PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.690e-11
Identity = 34/50 (68.00%), Postives = 40/50 (80.00%), Query Frame = -2 
Query:  388 KRFGIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 537
            K+  I  GDIIL+ LRDYQ+DKADVIL+Y  DEAR LK YGELPE+ R+N
Sbjct:   66 KKEWINNGDIILIQLRDYQNDKADVILRYNVDEARNLKTYGELPETARIN 115
The following BLAST results are available for this feature:
BLAST of CN189058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
IF1A_DICDI1.690e-1168.00Eukaryotic translation initiation factor 1A OS=Dic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001E02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189058 ID=CN189058; Name=CN189058; organism=Citrus sinensis; type=EST; length=538bp
TTTTTTTTTTTTTTTGTCTTCCAATTGCCACAACAAATTATTATTGACAT
TAAAGAATTGAACCATACCAGTATAAGATTCCATTCTAGAAATACCACTT
CAAAAAAAGTGCAGAACTAAACAAAATTAATAAGCAAGTAATAGGCGTTA
CACGAAATATGACAGGCTCACCATTAAAAATTCCAAATATATAAGCTGCA
AACACATATTTTCAGCTTTTAAGTAACCAATACATTGGCATACTCCATTT
TTGCTAAATATTGAACATAAACCCCAGACAGAGTCGATTCTCGGAGCCTA
GATCTTATCAATATCTTCGTCTTCAAACTCGATGTAATCATTATCAGCGC
CATCATCCTCTTCATCAAGACCACCAGCAATGCCCTCATTGAGACGGGTA
CTCTCTGGAAGTTCACCATAAGCCTTCAGAAGCCTTGCCTCGTCGGGCAT
ATACTTGAGGATGACATCAGCCTTGTCATCCTGATAATCACGTAGGCCAA
CAAGTATTATATCACCAGCTGCAATCCCAAACCTTTTT
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