CN189052

Overview
NameCN189052
Unique NameCN189052
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189052 vs. ExPASy Swiss-Prot
Match: CYT3_ORYSJ (Cysteine proteinase inhibitor 3 OS=Oryza sativa subsp. japonica GN=Os05g0409300 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.766e-17
Identity = 52/132 (39.39%), Postives = 74/132 (56.06%), Query Frame = 2
Query:    8 LLFLIISATA----NSEFCDDKMALLGGVQESRGAENSNEIESLARFAIEEHNKKENALLXXXXXXXXXXXXXXGTMHHLTVEAIDAGRKKLYEAKVWVKPWLNFKDLQEFKHVGDSPA-SFTSSDLGVKKD 388
            LL L ++A A          D+  L+ G+  +   E + E E  ARFA+ E+NK + A L              GT+H L +E +D+G+K LY AKVWVKPWL+FK + EF+HVGDS + S T++D    +D
Sbjct:   21 LLLLAVAAAAPRAAGFHLGGDESVLVRGMLAAIRREQA-EAEDAARFAVAEYNKNQGAELEFARIVKAKRQVVTGTLHDLMLEVVDSGKKSLYSAKVWVKPWLDFKAVVEFRHVGDSQSQSATAADDNAGQD 151          
BLAST of CN189052 vs. ExPASy Swiss-Prot
Match: CYT1_ARATH (Cysteine proteinase inhibitor 1 OS=Arabidopsis thaliana GN=CYS1 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.358e-16
Identity = 42/92 (45.65%), Postives = 53/92 (57.61%), Query Frame = 2
Query:   68 LLGGVQESRGAENSNEIESLARFAIEEHNKKENALLXXXXXXXXXXXXXXGTMHHLTVEAIDAGRKKLYEAKVWVKPWLNFKDLQEFKHVGD 343
            ++GGV++     N  ++ESLARFA++EHNK EN  L              GTMHHLTVE  D    K+YEAKV  K W N K L+ F H+ D
Sbjct:    9 IVGGVRDIDANANDLQVESLARFAVDEHNKNENLTLEYKRLLGAKTQVVAGTMHHLTVEVADGETNKVYEAKVLEKAWENLKQLESFNHLHD 100          
BLAST of CN189052 vs. ExPASy Swiss-Prot
Match: CYT2_ORYSJ (Cysteine proteinase inhibitor 2 OS=Oryza sativa subsp. japonica GN=Os05g0494200 PE=2 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 3.143e-14
Identity = 43/96 (44.79%), Postives = 55/96 (57.29%), Query Frame = 2
Query:   71 LGGVQES-RGAENSNEIESLARFAIEEHNKKENALLXXXXXXXXXXXXXXGTMHHLTVEAID-AGRKKLYEAKVWVKPWLNFKDLQEFKHVGDSPA 352
            +GG+ ++  G EN      LARFA+ EHN K NA+L              G MH+LTVE  +  G  KLYEAKVW + W NFK LQ+FK + D+ A
Sbjct:   56 VGGIHDAPAGRENDLTTVELARFAVAEHNSKANAMLELERVVKVRQQVVGGFMHYLTVEVKEPGGANKLYEAKVWERAWENFKQLQDFKPLDDATA 151          
The following BLAST results are available for this feature:
BLAST of CN189052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CYT3_ORYSJ6.766e-1739.39Cysteine proteinase inhibitor 3 OS=Oryza sativa su... [more]
CYT1_ARATH3.358e-1645.65Cysteine proteinase inhibitor 1 OS=Arabidopsis tha... [more]
CYT2_ORYSJ3.143e-1444.79Cysteine proteinase inhibitor 2 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D21_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189052 ID=CN189052; Name=CN189052; organism=Citrus sinensis; type=EST; length=749bp
CGGTCTGCTTCTGTTTCTGATCATATCTGCGACGGCAAATTCTGAATTTT
GCGACGATAAAATGGCCTTGCTTGGCGGAGTACAGGAATCCCGAGGTGCC
GAAAACAGCAATGAAATTGAAAGCCTCGCTCGATTCGCCATCGAAGAACA
CAACAAAAAAGAGAATGCTTTGCTGGAGTTTGTGAAAGTGGTGAAGGCGC
AAGAGCAGGTGGTTGCTGGTACCATGCATCATCTAACAGTGGAGGCTATT
GATGCTGGTAGGAAGAAGCTATACGAAGCGAAAGTGTGGGTCAAGCCATG
GTTGAATTTTAAGGATTTGCAGGAATTTAAGCACGTTGGTGATTCCCCCG
CCTCTTTCACCTCTTCAGATCTTGGTGTTAAGAAAGATGGTCATTGCCCT
GGATGGCAGGCAGTTCCCGTACATGATCCTCAAGTCCAGGATGCAGCCAA
TCATGCTATCCAAACCATTCAGCAAAGGTCCAACTCCCTCTTCCCTTATG
TACTTCAGGAGATTGTTCATGCAAAAGCTGAGGTGATTGAGGATTTTGCG
AAATTTGCCATGCTTCTGAAAGTGAAGAGGGGAGAAAAAGAGGAGAAGCT
CAATGTTGAAGTACACAAGAAGGAGGGCACATTCCATCTCAATCAAATGC
AACAAGATCAAGAGTGATTTTGGAGATCATTGCTTGTGTTTTGTAGGGAA
AATTATGCTTATATCTTGTTCATGTTGGTAGTATTTCTGTTTATACATA
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