CX675973

Overview
NameCX675973
Unique NameCX675973
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675973 vs. ExPASy Swiss-Prot
Match: H2A4_ORYSI (Probable histone H2A.4 OS=Oryza sativa subsp. indica GN=OsI_019561 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.019e-35
Identity = 73/102 (71.57%), Postives = 84/102 (82.35%), Query Frame = -2
Query:  195 ISKSVKAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMXXXXXXXXXXXXXXAGNAARDNKKNRINPRHVLLAVRNDDELGKLLQGVTIASGGVLPNINPVLL 500
            +S+SVKAGLQFPVGRI R+LK+GRY+QR+G+GAP+Y+              AGNAARDNKKNRI PRHVLLA+RND+ELGKLL GVTIA GGVLPNINPVLL
Sbjct:   27 VSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLL 128          
BLAST of CX675973 vs. ExPASy Swiss-Prot
Match: H2A2_PEA (Histone H2A.2 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.019e-35
Identity = 74/102 (72.55%), Postives = 84/102 (82.35%), Query Frame = -2
Query:  195 ISKSVKAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMXXXXXXXXXXXXXXAGNAARDNKKNRINPRHVLLAVRNDDELGKLLQGVTIASGGVLPNINPVLL 500
            +++SV+AGLQFPVGRI RFLKKGRYAQR+G+GAP+Y+              AGNAARDNKKNRI+PRH+LLAVRND ELGKLL GVTIA GGVLPNINPVLL
Sbjct:   24 VTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRISPRHLLLAVRNDVELGKLLAGVTIAYGGVLPNINPVLL 125          
BLAST of CX675973 vs. ExPASy Swiss-Prot
Match: H2A7_ARATH (Probable histone H2A.7 OS=Arabidopsis thaliana GN=At5g59870 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.197e-34
Identity = 74/102 (72.55%), Postives = 82/102 (80.39%), Query Frame = -2
Query:  195 ISKSVKAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMXXXXXXXXXXXXXXAGNAARDNKKNRINPRHVLLAVRNDDELGKLLQGVTIASGGVLPNINPVLL 500
            +SKS+KAGLQFPVGRI RFLKKGRYAQR+G GAP+YM              AGNAARDNKK+RI PRH+LLA+RND+ELGKLL GVTIA GGVLPNIN VLL
Sbjct:   25 VSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVYMAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLL 126          
BLAST of CX675973 vs. ExPASy Swiss-Prot
Match: H2A3_MEDTR (Probable histone H2A.3 OS=Medicago truncatula PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.564e-34
Identity = 71/102 (69.61%), Postives = 84/102 (82.35%), Query Frame = -2
Query:  195 ISKSVKAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMXXXXXXXXXXXXXXAGNAARDNKKNRINPRHVLLAVRNDDELGKLLQGVTIASGGVLPNINPVLL 500
            +++S++AGLQFPVGRI R+LKKGRYAQR+G+GAP+Y+              AGNAARDNKKNRI PRH+LLAVRND+ELGKLL GVTIA GGVLPNINP+LL
Sbjct:   25 VTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVLPNINPILL 126          
BLAST of CX675973 vs. ExPASy Swiss-Prot
Match: H2A1_MEDTR (Probable histone H2A.1 OS=Medicago truncatula GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.564e-34
Identity = 72/102 (70.59%), Postives = 83/102 (81.37%), Query Frame = -2
Query:  195 ISKSVKAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMXXXXXXXXXXXXXXAGNAARDNKKNRINPRHVLLAVRNDDELGKLLQGVTIASGGVLPNINPVLL 500
            +++S +AGLQFPVGRI R+LKKGRYAQR+G+GAP+Y+              AGNAARDNKKNRI PRHVLLAVRND+ELGKLL GVTIA GGVLPNINP+LL
Sbjct:   23 VTRSTRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPILL 124          
BLAST of CX675973 vs. ExPASy Swiss-Prot
Match: H2A_MAIZE (Histone H2A OS=Zea mays PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.484e-34
Identity = 73/102 (71.57%), Postives = 82/102 (80.39%), Query Frame = -2
Query:  195 ISKSVKAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMXXXXXXXXXXXXXXAGNAARDNKKNRINPRHVLLAVRNDDELGKLLQGVTIASGGVLPNINPVLL 500
            +S+SVKAGLQFPVGRI R+LKKGRYAQ +G+GAP+Y+              AGNAARDNKK RI PRHVLLA+RND+ELGKLL GVTIA GGVLPNINPVLL
Sbjct:   29 VSRSVKAGLQFPVGRIGRYLKKGRYAQXVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAIRNDEELGKLLGGVTIAHGGVLPNINPVLL 130          
BLAST of CX675973 vs. ExPASy Swiss-Prot
Match: H2A4_ARATH (Probable histone H2A.4 OS=Arabidopsis thaliana GN=At5g02560 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.550e-34
Identity = 71/102 (69.61%), Postives = 84/102 (82.35%), Query Frame = -2
Query:  195 ISKSVKAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMXXXXXXXXXXXXXXAGNAARDNKKNRINPRHVLLAVRNDDELGKLLQGVTIASGGVLPNINPVLL 500
            +S+SVK+GLQFPVGRI R+LKKGRY++R+G+GAP+Y+              AGNAARDNKKNRI PRHVLLAVRND+ELG LL+GVTIA GGVLPNINP+LL
Sbjct:   25 VSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILL 126          
BLAST of CX675973 vs. ExPASy Swiss-Prot
Match: H2A_PETCR (Histone H2A OS=Petroselinum crispum PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.942e-34
Identity = 72/102 (70.59%), Postives = 82/102 (80.39%), Query Frame = -2
Query:  195 ISKSVKAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMXXXXXXXXXXXXXXAGNAARDNKKNRINPRHVLLAVRNDDELGKLLQGVTIASGGVLPNINPVLL 500
            +++SVKAGLQFPVGRI R+LKKGRYAQR+G+GAP+Y+              AGNAARDNKK RI PRH+LLAVRND+ELGKLL GVT A GGVLPNINPVLL
Sbjct:   23 VTRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHLLLAVRNDEELGKLLAGVTFAHGGVLPNINPVLL 124          
BLAST of CX675973 vs. ExPASy Swiss-Prot
Match: H2A2_WHEAT (Histone H2A.2.1 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.761e-34
Identity = 70/102 (68.63%), Postives = 82/102 (80.39%), Query Frame = -2
Query:  195 ISKSVKAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMXXXXXXXXXXXXXXAGNAARDNKKNRINPRHVLLAVRNDDELGKLLQGVTIASGGVLPNINPVLL 500
            ++KS+KAGLQFPVGRI R+LKKGRYAQR+GSGAP+Y+              AGNAA+DNKK RI PRH+LLA+RND ELG+LL GVTIA GGV+PNINPVLL
Sbjct:   22 VTKSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHLLLAIRNDQELGRLLSGVTIAHGGVIPNINPVLL 123          
BLAST of CX675973 vs. ExPASy Swiss-Prot
Match: H2A3_WHEAT (Histone H2A.2.2 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.324e-33
Identity = 70/102 (68.63%), Postives = 83/102 (81.37%), Query Frame = -2
Query:  195 ISKSVKAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMXXXXXXXXXXXXXXAGNAARDNKKNRINPRHVLLAVRNDDELGKLLQGVTIASGGVLPNINPVLL 500
            +++S+KAGLQFPVGRI R+LKKGRYAQR+GSGAP+Y+              AGNAA+DNKK+RI PRH+LLAVRND ELG+LL GVTIA GGV+PNINPVLL
Sbjct:   22 VTRSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKSRIVPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINPVLL 123          
The following BLAST results are available for this feature:
BLAST of CX675973 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
H2A4_ORYSI7.019e-3571.57Probable histone H2A.4 OS=Oryza sativa subsp. indi... [more]
H2A2_PEA7.019e-3572.55Histone H2A.2 OS=Pisum sativum PE=2 SV=1[more]
H2A7_ARATH1.197e-3472.55Probable histone H2A.7 OS=Arabidopsis thaliana GN=... [more]
H2A3_MEDTR1.564e-3469.61Probable histone H2A.3 OS=Medicago truncatula PE=3... [more]
H2A1_MEDTR1.564e-3470.59Probable histone H2A.1 OS=Medicago truncatula GN=M... [more]
H2A_MAIZE3.484e-3471.57Histone H2A OS=Zea mays PE=2 SV=1[more]
H2A4_ARATH4.550e-3469.61Probable histone H2A.4 OS=Arabidopsis thaliana GN=... [more]
H2A_PETCR5.942e-3470.59Histone H2A OS=Petroselinum crispum PE=2 SV=1[more]
H2A2_WHEAT7.761e-3468.63Histone H2A.2.1 OS=Triticum aestivum PE=1 SV=1[more]
H2A3_WHEAT1.324e-3368.63Histone H2A.2.2 OS=Triticum aestivum PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_66B02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-66B02-D4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675973 ID=CX675973; Name=CX675973; organism=Citrus sinensis; type=EST; length=639bp
TTTTTTTAGCAAAAAGGCAAAATTTCCATTAAAGCCACTTTACACGAAAA
AGGAAGAAAATAGAACAAAAATTACATCAAAGGCCTTTAGTTCTAGTACT
ATTGTTACTGGTGTCAACATTATCGTAAATTTTAAGCCTTTTTCGGGGAC
TTTGGGGATTTCGGGGTCTCAGATGTAGAAGTTGTTTTCTTTGGCAGAAG
GACCGGATTGATATTTGGAAGTACACCACCACTTGCTATTGTCACGCCTT
GGAGAAGCTTCCCCAGTTCGTCGTCGTTTCTAACTGCCAATAGCACGTGC
CTCGGGTTTATTCTGTTCTTCTTATTGTCACGTGCTGCGTTCCCCGCCAA
CTCCAACACCTCAGCGGCGAGATATTCTAAAACGGCGGCCATATAAATGG
GGGCCCCAGAGCCCATTCTCTGGGCATAGCGACCCTTTTTCAGGAACCGG
GCGATACGACCGACCGGGAATTGGAGACCGGCTTTCACTGATTTCGATAT
CTTCTTCCTCTCGCCGCCGCCTCTCCTTCCTCCCGCTCCTTTCGTTGGCT
TCGTCACCTCCATTTGGTCTTAATATGCCGCCGACGGAAAAGTTGAGTTT
CTTCTGAAAAGATTTTGTTTGTTTACGACTTTCGAGCCT
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