CN189046

Overview
NameCN189046
Unique NameCN189046
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3595 contig Csv1_Contig3595:159..922. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189046 vs. ExPASy Swiss-Prot
Match: CUL1_DICDI (Cullin-1 OS=Dictyostelium discoideum GN=culA PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.749e-36
Identity = 89/239 (37.24%), Postives = 133/239 (55.65%), Query Frame = 1
Query:   55 SSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWP-SYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQ---KNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAK 759
            S S ELLA F D +LKK  N     E +E+ L  V+ +  YI DKD+F +FY K LA+RL+   S ++D E +++ KLK  CG ++TSK++ M TD++L+RE    F  ++   + +   ID SV VL TG WP    S++ ++P E+  C ++F+ FY+ +   RKL W++ L +  +  K+ Q       L  STYQ   LL FN  + L+  EI     L    L   L SL+ +K
Sbjct:  407 SKSPELLARFTDFLLKKSPNNPEESE-MEQLLNDVMIVFKYIEDKDVFQDFYSKMLAKRLIHGTSTSEDLEGTMIGKLKSTCGYEYTSKLQRMFTDMSLSRELLDRFNNHIEQVERSSLNIDFSVLVLATGSWPLQPPSTNFSIPKELQACEQLFQKFYQNQHSGRKLNWLHHLSKGELKTKYLQTSKSGYTLQCSTYQIGVLLQFNQYETLTSEEIQESTQLIDSVLKGTLTSLAKSK 644          
BLAST of CN189046 vs. ExPASy Swiss-Prot
Match: CUL1_CAEEL (Cullin-1 OS=Caenorhabditis elegans GN=cul-1 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.964e-35
Identity = 76/232 (32.76%), Postives = 134/232 (57.76%), Query Frame = 1
Query:   55 SSSSELLATFCDNILKKGGNEKLSDEA-IEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSL 747
            + S+ELLA +CD +L+K  + K+ DEA +EE   K++ +  YI DKD+F++FY K  ++RL+ + SA+D+ E + +TKLK  CG ++T+++  MV D  ++++    F+E  + +      ++ +V VL++G WP++ ++ + LP ++ K +E+F  FY  K   R+LTW+YS  +  I      K      +T Q  T+LLFN  D  +  +I     +       ++ SL
Sbjct:  420 TKSAELLARYCDQLLRK--SSKMPDEAELEELQTKIMVVFKYIDDKDVFSKFYTKMFSKRLISELSASDEAEANFITKLKSMCGYEYTARLSKMVNDTQVSKDLTADFKEKKA-DMLGQKSVEFNVLVLSSGSWPTFPTTPITLPQQLSKTIEIFGQFYNEKFNGRRLTWVYSQSRGEITSTAFPKKYVFTATTAQMCTMLLFNEQDSYTVEQIAAATKMDEKSAPAIVGSL 648          
BLAST of CN189046 vs. ExPASy Swiss-Prot
Match: CUL1_DROME (Cullin homolog 1 OS=Drosophila melanogaster GN=lin19 PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 9.745e-35
Identity = 88/259 (33.98%), Postives = 143/259 (55.21%), Query Frame = 1
Query:    7 ALKEAFEIFCNKPV-----GGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSL--GQCNIN-GKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAK 759
            AL +A   F N  V       S S ELLA +CD +LKK       D+ +E+ L +V+ +  YI DKD+F ++Y K LA+RL+   SA+DD E  +++KLKQ CG ++T K++ M  D+ ++++  + F++YL+  +N    ID  + VL++G WP   S++  LPSE+ + V  F  FY  +   RKL W+Y +  G+  +N  +       L  ST+Q + LL FN     +  ++        ++L+++L  L  AK
Sbjct:  394 ALDKACGKFINSNVVTIANSASKSPELLAKYCDLLLKKSSKNP-EDKELEDNLNQVMVVFKYIEDKDVFQKYYSKMLAKRLVNHTSASDDAEAMMISKLKQTCGYEYTVKLQRMFQDIGVSKDLNSYFKQYLA-EKNLTMEIDFGIEVLSSGSWPFQLSNNFLLPSELERSVRQFNEFYAARHSGRKLNWLYQMCKGELIMNVNRNNSSTYTLQASTFQMSVLLQFNDQLSFTVQQLQDNTQTQQENLIQVLQILLKAK 650          
BLAST of CN189046 vs. ExPASy Swiss-Prot
Match: CUL1_SCHPO (Cullin-1 OS=Schizosaccharomyces pombe GN=cul1 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.662e-34
Identity = 92/260 (35.38%), Postives = 145/260 (55.77%), Query Frame = 1
Query:    4 EALKEAFEIFCNKPV----GGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWP-SYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFE-QKNIELI--VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAK 759
            ++L  AF    N+ V      S S ELLA + D+IL+K  N+ +  + +E+ L  ++ +  Y+ DKD+F  FY K LA+RL+   S + D E S+L+KLK+ CG ++TSK++ M  D++L++E   +F +     Q+    ID S  VL T FWP S  + + +LP E+V   E F+ +Y +    RKL+W++ L +  I  +   Q N+  +  VSTYQ   LLL+N  D  +Y E+     L+ D L  +L+    AK
Sbjct:  390 KSLDTAFRELVNRNVVCQRSSSRSPELLAKYADSILRKS-NKNVDIDDVEDCLSSIIIIFRYVEDKDVFQNFYTKLLAKRLVNGTSNSQDAESSMLSKLKEVCGFEYTSKLQRMFQDISLSQEITEAFWQL---PQSRAGNIDFSALVLGTSFWPLSPNNVNFHLPEELVPLYEGFQNYYYSCHNGRKLSWLFHLSKGEIKARINPQTNVTYVFQVSTYQMGVLLLYNHRDSYTYEELAKITGLSTDFLTGILNIFLKAK 645          
BLAST of CN189046 vs. ExPASy Swiss-Prot
Match: CUL4_CAEEL (Cullin-4 OS=Caenorhabditis elegans GN=cul-4 PE=1 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 1.317e-31
Identity = 75/246 (30.49%), Postives = 130/246 (52.85%), Query Frame = 1
Query:    4 EALKEAFEIFCNKPVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLS--NNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQK-NIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVR 732
            + L +AFE F NK V    S+EL++     +L         D  +++ +++ + L  Y+  KD+F  +Y++ LA+RL  +RSA+ D E+ +L KLK +CG  FT K+EGM  D+  +      F +YL   N + A    + +  V+T  +WP+Y + ++N+P EM   +  ++ FY  +  +R + W + L    I+  F      ELI + YQ   LLLFN  +  + +EI+    +   ++V+
Sbjct:  458 QCLSDAFESFVNKQV--DRSAELISKHFHTLLHSSNKNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLERSASVDAEKMVLCKLKTECGSAFTYKLEGMFKDMDASENYGRLFNQYLEHMNKEKA----NFTARVITPEYWPTYDTYEINIPKEMRDTLTDYQDFYRVQHGNRNVKWHHGLASAVISASFRPGCKKELIATMYQTVILLLFNKCETWTVAEIVEHTKILEIEVVK 697          
BLAST of CN189046 vs. ExPASy Swiss-Prot
Match: CUL3_CAEEL (Cullin-3 OS=Caenorhabditis elegans GN=cul-3 PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.720e-31
Identity = 90/273 (32.97%), Postives = 140/273 (51.28%), Query Frame = 1
Query:   22 FEIFCNKPVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKF------EQKNIE---------------------LIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAK 759
            FE F N       S E +A + D++L+ G  + +SD  ++  L+ V+ L  Y+ +KD+F +++++ LA+RLL D+S +DD E+++L KLK +CG QFT K+E M  D  L     TSF ++    Q     ID+S+ VLT G WP+ + + + LP E+    E+F  +Y  K   RKLT    LG  ++   F         N E                     L V+T+Q   LL FN  +R+S  ++M +L +   +L R L SL+  K
Sbjct:  380 FETFLNS---NRQSPEFVALYMDDMLRSG-LKCVSDAEMDNKLDNVMILFRYLQEKDVFEKYFKQYLAKRLLLDKSCSDDVEKALLAKLKTECGCQFTQKLENMFRDKELWLTLATSFRDW-REAQPTKMSIDISLRVLTAGVWPTVQCNPVVLPQELSVAYEMFTQYYTEKHTGRKLTINTLLGNADVKATFYPPPKASMSNEENGPGPSSSGESMKERKPEHKILQVNTHQMIILLQFNHHNRISCQQLMDELKIPERELKRNLQSLALGK 647          
BLAST of CN189046 vs. ExPASy Swiss-Prot
Match: CUL2_CAEEL (Cullin-2 OS=Caenorhabditis elegans GN=cul-2 PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 2.103e-29
Identity = 78/269 (29.00%), Postives = 138/269 (51.30%), Query Frame = 1
Query:    1 AEALKEAFEIFCNKPVGGSS---SSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVT---VLTTGFWP--------------SYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSL 747
            +  L +A +   N    G S   +SE LA + D +LKK   + LS+  +E  L+  + +  YI DKD+F +FY K LA RL+   S + D E  ++ KLKQ CG +FTSK+  M TD+ L++E   +F++++++ +   P +    T   +L  G WP              +   ++ +LP  +   ++ F+ FY  K   RKLTW++++ Q ++   +  K     +  YQ A LL F   D +   +I  ++ ++ D L++ + ++
Sbjct:  381 SSGLDKALQGVVNSKEPGQSVPKASERLARYTDGLLKKS-TKGLSETDLEAKLDSAIVIFRYIEDKDIFQKFYSKMLANRLIASTSISMDAEELMINKLKQACGYEFTSKLSRMFTDIGLSQELSNNFDKHIADIKTVQPDVKFVPTQTMILQAGSWPLNAPQLSTNSNNQTAQDVANFHLPRILQPVIQEFEKFYTGKHNGRKLTWLFNMSQGDVRLTYLDKQYVAQMYVYQMAALLCFERRDAILVKDIGEEIGVSGDYLLKTIRTI 648          
BLAST of CN189046 vs. ExPASy Swiss-Prot
Match: CUL6_CAEEL (Cullin-6 OS=Caenorhabditis elegans GN=cul-6 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.179e-28
Identity = 73/230 (31.74%), Postives = 119/230 (51.74%), Query Frame = 1
Query:   61 SSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 750
            S++ LA +CD +LKK  N K+ DE     L+K + +L YIS+KD+F  +Y+   + R++ + SA+DD E   +T L    G ++T  +  MV D  ++++  T F++  +        ID +V + TTG WPS     + LP E+   ++ F  FY      R+L W YS  +  +N K  +K    IV+  Q  TL LFN  D  +  +I   + +T      ++ SL+
Sbjct:  378 SADYLARYCDQLLKK--NSKVQDET---ALDKALTVLKYISEKDVFQLYYQNWFSERIINNSSASDDAEEKFITNLTATEGLEYTRNLVKMVEDAKISKDLTTEFKDIKTEKS-----IDFNVILQTTGAWPSLDQIKIILPRELSTILKEFDTFYNASHNGRRLNWAYSQCRGEVNSKAFEKKYVFIVTASQLCTLYLFNEQDSFTIEQISKAIEMTAKSTSAIVGSLN 597          
BLAST of CN189046 vs. ExPASy Swiss-Prot
Match: CUL5_DICDI (Cullin-5 OS=Dictyostelium discoideum GN=culE PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.842e-26
Identity = 74/237 (31.22%), Postives = 131/237 (55.27%), Query Frame = 1
Query:    7 ALKEAFEIFCNKPVGG-------SSSSELLATFCDNILKKGGNEKLSDEA-IEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWP---SYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNI-ELIVSTYQAATLLLFNTSDRLS 681
            A+ ++F I  N+           S+   +L+ FCD IL+KG +  +SDEA +E+ L + V L  Y+ DKD+F   Y+K L++RL+ D SA++D E  ++ KLK   G  + +K+  M+TD+ L ++   +F+ +L+      P    +  VLT G W       ++    PSEM+  +  F+ FY+   + R LT++Y   + +++ +  +  I +L  + YQ A LL+FN +D+++
Sbjct:  358 AMDKSFSILVNENPASYDPKKKESNIPVVLSKFCDQILRKGPHH-ISDEAELEKKLTEAVCLFKYLPDKDIFMLNYQKMLSKRLVEDLSASEDAETLMINKLKNYQGFDYCTKLTRMITDMRLCKDININFQNHLNEKSLTLP-YQFNFYVLTNGSWTLTNKQTATPFKPPSEMLSSITYFESFYKKSYQGRVLTFLYDFSRADVDSRQAKGKIYKLTTTAYQMAILLMFNGADKIT 592          
BLAST of CN189046 vs. ExPASy Swiss-Prot
Match: CUL3_YEAST (Cullin-3 OS=Saccharomyces cerevisiae GN=CUL3 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.941e-23
Identity = 73/251 (29.08%), Postives = 130/251 (51.79%), Query Frame = 1
Query:   10 LKEAFEIFCNKPVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLN----LPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 750
            L + F ++ +K   G+  SE L+T+ D+ +K+   +      I++ L    KL+  +++KD+F + Y+K+L+RRLL  RS  +  E+ ++  +K+  G  FTSK+E M+ D++L+ E   +F+    +  N+   +  +  VLT   WP   ++ ++    LP  M + +  F+G+Y  K K R L W + L    I  +F     E+  S Y     LLF   + L+  EI    ++  DD+  L+ S+S
Sbjct:  369 LGDVFSMYFSKE--GALPSEYLSTYVDHCMKRTKEKDAEIVKIKQDLLDSTKLIGLLTEKDIFEKIYKKQLSRRLLQQRSLVEI-EKWMVQMIKKVLGTFFTSKLEIMLRDISLSSEMYQAFQH---STINSIEYLSFAPQVLTRTSWPFQSTNPIDEGISLPPRMSQILAGFEGYYSLKYKERVLKWAHHLSVIEIGCQFNSGYYEISFSVYAGVIFLLFEDYEELTLGEIYELTHIPIDDVKSLVMSMS 613          
The following BLAST results are available for this feature:
BLAST of CN189046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
CUL1_DICDI6.749e-3637.24Cullin-1 OS=Dictyostelium discoideum GN=culA PE=1 ... [more]
CUL1_CAEEL1.964e-3532.76Cullin-1 OS=Caenorhabditis elegans GN=cul-1 PE=1 S... [more]
CUL1_DROME9.745e-3533.98Cullin homolog 1 OS=Drosophila melanogaster GN=lin... [more]
CUL1_SCHPO1.662e-3435.38Cullin-1 OS=Schizosaccharomyces pombe GN=cul1 PE=1... [more]
CUL4_CAEEL1.317e-3130.49Cullin-4 OS=Caenorhabditis elegans GN=cul-4 PE=1 S... [more]
CUL3_CAEEL1.720e-3132.97Cullin-3 OS=Caenorhabditis elegans GN=cul-3 PE=1 S... [more]
CUL2_CAEEL2.103e-2929.00Cullin-2 OS=Caenorhabditis elegans GN=cul-2 PE=1 S... [more]
CUL6_CAEEL5.179e-2831.74Cullin-6 OS=Caenorhabditis elegans GN=cul-6 PE=1 S... [more]
CUL5_DICDI2.842e-2631.22Cullin-5 OS=Dictyostelium discoideum GN=culE PE=3 ... [more]
CUL3_YEAST2.941e-2329.08Cullin-3 OS=Saccharomyces cerevisiae GN=CUL3 PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D18_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189046 ID=CN189046; Name=CN189046; organism=Citrus sinensis; type=EST; length=762bp
GCGGAGGCTCTGAAAGAGGCTTTTGAGATATTTTGCAATAAACCTGTTGG
TGGCAGTTCGAGTTCAGAACTGCTGGCAACTTTTTGTGATAATATCCTAA
AGAAGGGTGGAAATGAGAAACTGAGTGATGAAGCCATTGAAGAAACTCTG
GAGAAGGTTGTTAAGCTGCTTGCATATATCAGTGATAAAGATCTTTTTGC
CGAATTCTACAGGAAGAAGCTTGCTCGTCGGCTGCTTTTTGATCGTAGTG
CTAATGATGATCATGAAAGGAGTATTCTCACAAAGCTGAAGCAGCAGTGT
GGTGGACAGTTTACATCGAAGATGGAGGGAATGGTTACAGATTTGACTTT
GGCAAGAGAAAATCAGACCAGCTTTGAGGAATATCTCAGCAATAACCAGA
ATGCACACCCTGGAATAGATTTATCAGTTACTGTTCTCACTACTGGATTT
TGGCCAAGTTATAAATCCTCCGATCTGAACCTTCCTTCTGAGATGGTTAA
ATGTGTAGAAGTTTTTAAGGGATTTTATGAAACCAAAACAAAACACAGAA
AACTTACATGGATTTACTCATTGGGTCAATGCAACATAAATGGCAAGTTT
GAGCAAAAAAATATTGAGCTGATTGTATCAACATATCAGGCTGCAACTCT
ACTGCTTTTTAATACTTCGGATAGATTGAGCTATTCAGAGATCATGACTC
AGCTGAACTTGACTCATGATGACCTGGTTAGATTGCTCCATTCCCTGTCA
TGTGCCAAGTAT
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