CN189046

Overview
NameCN189046
Unique NameCN189046
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189046 vs. ExPASy Swiss-Prot
Match: CUL5_RAT (Cullin-5 OS=Rattus norvegicus GN=Cul5 PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 3.841e-23
Identity = 69/236 (29.24%), Postives = 127/236 (53.81%), Query Frame = 1
Query:   55 SSSSELLATFCDNILKKGG-NEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQ-QCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWP-SYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFN--TSDRLSYSEIMTQLNLTHDDLVRLLHSL 747
            S   ELLA +CD +L+K   ++KL+ E IE  L++V+ +L Y+ +KD+F  +++  L RRL+ D SA+ + E +++  L++      + +K+  M  D+ ++ +   +F+E   NN+ A P   +++ +L  G W  S +   ++LP+E+   +   + FY+     RKL W + +    I  K E    +L V+T+Q A L  +N    +++S+  +     L   +L R L SL
Sbjct:  402 SKCPELLANYCDMLLRKTPLSKKLTSEEIEAKLKEVLLVLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWLREVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVEEFYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSL 637          
BLAST of CN189046 vs. ExPASy Swiss-Prot
Match: CUL5_RABIT (Cullin-5 OS=Oryctolagus cuniculus GN=CUL5 PE=2 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 3.841e-23
Identity = 69/236 (29.24%), Postives = 127/236 (53.81%), Query Frame = 1
Query:   55 SSSSELLATFCDNILKKGG-NEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQ-QCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWP-SYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFN--TSDRLSYSEIMTQLNLTHDDLVRLLHSL 747
            S   ELLA +CD +L+K   ++KL+ E IE  L++V+ +L Y+ +KD+F  +++  L RRL+ D SA+ + E +++  L++      + +K+  M  D+ ++ +   +F+E   NN+ A P   +++ +L  G W  S +   ++LP+E+   +   + FY+     RKL W + +    I  K E    +L V+T+Q A L  +N    +++S+  +     L   +L R L SL
Sbjct:  402 SKCPELLANYCDMLLRKTPLSKKLTSEEIEAKLKEVLLVLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWLREVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVEEFYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSL 637          
BLAST of CN189046 vs. ExPASy Swiss-Prot
Match: CUL5_MOUSE (Cullin-5 OS=Mus musculus GN=Cul5 PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 3.841e-23
Identity = 69/236 (29.24%), Postives = 127/236 (53.81%), Query Frame = 1
Query:   55 SSSSELLATFCDNILKKGG-NEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQ-QCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWP-SYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFN--TSDRLSYSEIMTQLNLTHDDLVRLLHSL 747
            S   ELLA +CD +L+K   ++KL+ E IE  L++V+ +L Y+ +KD+F  +++  L RRL+ D SA+ + E +++  L++      + +K+  M  D+ ++ +   +F+E   NN+ A P   +++ +L  G W  S +   ++LP+E+   +   + FY+     RKL W + +    I  K E    +L V+T+Q A L  +N    +++S+  +     L   +L R L SL
Sbjct:  402 SKCPELLANYCDMLLRKTPLSKKLTSEEIEAKLKEVLLVLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWLREVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVEEFYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSL 637          
BLAST of CN189046 vs. ExPASy Swiss-Prot
Match: CUL5_HUMAN (Cullin-5 OS=Homo sapiens GN=CUL5 PE=1 SV=4)

HSP 1 Score: 108.612 bits (270), Expect = 3.841e-23
Identity = 69/236 (29.24%), Postives = 127/236 (53.81%), Query Frame = 1
Query:   55 SSSSELLATFCDNILKKGG-NEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQ-QCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWP-SYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFN--TSDRLSYSEIMTQLNLTHDDLVRLLHSL 747
            S   ELLA +CD +L+K   ++KL+ E IE  L++V+ +L Y+ +KD+F  +++  L RRL+ D SA+ + E +++  L++      + +K+  M  D+ ++ +   +F+E   NN+ A P   +++ +L  G W  S +   ++LP+E+   +   + FY+     RKL W + +    I  K E    +L V+T+Q A L  +N    +++S+  +     L   +L R L SL
Sbjct:  402 SKCPELLANYCDMLLRKTPLSKKLTSEEIEAKLKEVLLVLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWLREVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVEEFYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSL 637          
BLAST of CN189046 vs. ExPASy Swiss-Prot
Match: CUL5_CAEEL (Cullin-5 OS=Caenorhabditis elegans GN=cul-5 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.841e-23
Identity = 75/240 (31.25%), Postives = 128/240 (53.33%), Query Frame = 1
Query:   55 SSSSELLATFCDNILKKGG-NEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCG--GQFTSKMEGMVTDLTLARENQTSFEEYLS-NNQNAHPGIDLSVTVLTTGFWPSYKSSDL--NLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQ-CNINGKFEQKNIELIVSTYQAATLLLFN--TSDRLSYSEIMTQLNLTHDDLVRLLHSL 747
            S  +ELLA +CD +L+K   ++KL+ E I+E L +V+ +L Y+ +KD+F  F+R  L+RRL+ + SA+ + E  ++TKL+ +CG      +K+  M+ D+ L ++  +SF++ L+  N N      +++ VL  G W    S  +  +LP E+   V   + FY+ +   RKL W++       + G       +L  +T+Q A L  FN    D++S   +     L   +L R L SL
Sbjct:  382 SKCAELLANYCDLLLRKTQLSKKLTSEEIDEKLNQVLLVLKYVENKDVFMRFHRAHLSRRLILEMSADQEKEEMMVTKLR-ECGMPSDAVNKLSRMLQDIELNKDMNSSFKKALTGTNNNKSIADSINMKVLNGGAWGRGGSERIRFSLPRELEDFVPEMEAFYKKQHNGRKLCWMHHWSSGTMVFGTANGGRFDLECTTFQMAVLFCFNDRAHDKISLETLRLATELPDAELNRTLLSL 620          
BLAST of CN189046 vs. ExPASy Swiss-Prot
Match: CUL5_PONAB (Cullin-5 OS=Pongo abelii GN=CUL5 PE=2 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 5.016e-23
Identity = 69/236 (29.24%), Postives = 127/236 (53.81%), Query Frame = 1
Query:   55 SSSSELLATFCDNILKKGG-NEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQ-QCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWP-SYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFN--TSDRLSYSEIMTQLNLTHDDLVRLLHSL 747
            S   ELLA +CD +L+K   ++KL+ E IE  L++V+ +L Y+ +KD+F  +++  L RRL+ D SA+ + E +++  L++      + +K+  M  D+ ++ +   +F+E   NN+ A P   +++ +L  G W  S +   ++LP+E+   +   + FY+     RKL W + +    I  K E    +L V+T+Q A L  +N    +++S+  +     L   +L R L SL
Sbjct:  402 SKCPELLAIYCDMLLRKTPLSKKLTSEEIEAKLKEVLLVLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWLREVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVEEFYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSL 637          
BLAST of CN189046 vs. ExPASy Swiss-Prot
Match: CDC53_YEAST (Cell division control protein 53 OS=Saccharomyces cerevisiae GN=CDC53 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.330e-20
Identity = 74/254 (29.13%), Postives = 120/254 (47.24%), Query Frame = 1
Query:    1 AEALKEAFEIFCN-----KPVGG-----SSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPG--IDLSVTVLTTGFWP-SYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNIN---GKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLT 714
            A+AL  A   F N      P G      S +SE+LA + D +LKK    +++ +  +E    ++ +  Y++DKD F   YR+  A+RL+   S + + E +I+ +L+     ++T K+  M  D+ L++  +  F   L N  +       DL   VL    WP SY+  +  LP E+V   E  K  Y  K   R L W++ L +  +    GK  +      V+ +Q A LLL+N +D L+   I    +LT
Sbjct:  405 AKALDNACGAFININEFALPAGSPKSATSKTSEMLAKYSDILLKKATKPEVASDMSDED---IITIFKYLTDKDAFETHYRRLFAKRLIHGTSTSAEDEENIIQRLQAANSMEYTGKITKMFQDIRLSKILEDDFAVALKNEPDYSKAKYPDLQPFVLAENMWPFSYQEVEFKLPKELVPSHEKLKESYSQKHNGRILKWLWPLCRGELKADIGKPGRMPFNFTVTLFQMAILLLYNDADVLTLENIQEGTSLT 655          
BLAST of CN189046 vs. ExPASy Swiss-Prot
Match: ANC2_MOUSE (Anaphase-promoting complex subunit 2 OS=Mus musculus GN=Anapc2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.813e-11
Identity = 47/177 (26.55%), Postives = 79/177 (44.63%), Query Frame = 1
Query:  166 LLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARE-NQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEI 693
            L++    KDLF   YR  LA RLL   S + + E   +  LK + G       E M+ D+  +R  N    EE         P   +   +L++ FWP +K   L +P ++   ++V+   YE     R L+W ++LG   ++ +   + + + V+  QA  LL F      +  E+
Sbjct:  520 LVSIYGSKDLFINEYRSLLADRLLHQFSFSPEREIRNVELLKLRFGEAPMHFCEVMLKDMADSRRINANIREEDEKRPVEEQPPFGVYAVILSSEFWPPFKDEKLEVPEDIRAALDVYCKKYEKLKAMRTLSWKHTLGLVTMDVELADRTLSVAVTPVQALVLLYFQNQASWTLEEL 696          
The following BLAST results are available for this feature:
BLAST of CN189046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
CUL5_RAT3.841e-2329.24Cullin-5 OS=Rattus norvegicus GN=Cul5 PE=1 SV=3[more]
CUL5_RABIT3.841e-2329.24Cullin-5 OS=Oryctolagus cuniculus GN=CUL5 PE=2 SV=... [more]
CUL5_MOUSE3.841e-2329.24Cullin-5 OS=Mus musculus GN=Cul5 PE=1 SV=3[more]
CUL5_HUMAN3.841e-2329.24Cullin-5 OS=Homo sapiens GN=CUL5 PE=1 SV=4[more]
CUL5_CAEEL3.841e-2331.25Cullin-5 OS=Caenorhabditis elegans GN=cul-5 PE=1 S... [more]
CUL5_PONAB5.016e-2329.24Cullin-5 OS=Pongo abelii GN=CUL5 PE=2 SV=3[more]
CDC53_YEAST2.330e-2029.13Cell division control protein 53 OS=Saccharomyces ... [more]
ANC2_MOUSE9.813e-1126.55Anaphase-promoting complex subunit 2 OS=Mus muscul... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D18_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189046 ID=CN189046; Name=CN189046; organism=Citrus sinensis; type=EST; length=762bp
GCGGAGGCTCTGAAAGAGGCTTTTGAGATATTTTGCAATAAACCTGTTGG
TGGCAGTTCGAGTTCAGAACTGCTGGCAACTTTTTGTGATAATATCCTAA
AGAAGGGTGGAAATGAGAAACTGAGTGATGAAGCCATTGAAGAAACTCTG
GAGAAGGTTGTTAAGCTGCTTGCATATATCAGTGATAAAGATCTTTTTGC
CGAATTCTACAGGAAGAAGCTTGCTCGTCGGCTGCTTTTTGATCGTAGTG
CTAATGATGATCATGAAAGGAGTATTCTCACAAAGCTGAAGCAGCAGTGT
GGTGGACAGTTTACATCGAAGATGGAGGGAATGGTTACAGATTTGACTTT
GGCAAGAGAAAATCAGACCAGCTTTGAGGAATATCTCAGCAATAACCAGA
ATGCACACCCTGGAATAGATTTATCAGTTACTGTTCTCACTACTGGATTT
TGGCCAAGTTATAAATCCTCCGATCTGAACCTTCCTTCTGAGATGGTTAA
ATGTGTAGAAGTTTTTAAGGGATTTTATGAAACCAAAACAAAACACAGAA
AACTTACATGGATTTACTCATTGGGTCAATGCAACATAAATGGCAAGTTT
GAGCAAAAAAATATTGAGCTGATTGTATCAACATATCAGGCTGCAACTCT
ACTGCTTTTTAATACTTCGGATAGATTGAGCTATTCAGAGATCATGACTC
AGCTGAACTTGACTCATGATGACCTGGTTAGATTGCTCCATTCCCTGTCA
TGTGCCAAGTAT
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