CN189044

Overview
NameCN189044
Unique NameCN189044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189044_ssr365 microsatellite CN189044_ssr365:365..376. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN189044 vs. ExPASy Swiss-Prot
Match: DENR_CRYNE (Translation machinery-associated protein 22 OS=Cryptococcus neoformans GN=TMA22 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.946e-23
Identity = 69/191 (36.13%), Postives = 96/191 (50.26%), Query Frame = 2
Query:   92 VRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLXXXXXXXXXXVXXXXXXXXXXXXXADGATSGQTSSSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPA---VPETAIYFIEDGKKVAA 655
            V   YC++CSLP EYCEFGP   KCK WL +   + Y  +                         AD A   + ++ K E        + KKKE+ +++I++  R KRK  T ++ L+LFGV L  A+K+   KFATG+SV K P  +E+I +QGD+  +IVE I     A   VP   I  +E  KK  A
Sbjct:   13 VHPFYCAVCSLPTEYCEFGPSVSKCKAWLEEQDKDEYERVWGEGALASRIGTLSLDKQEKLE---ADAAKLEKKAAKKAE-------AEAKKKEQTKIIIKRSERTKRKHQTHIQNLELFGVDLKKAAKQFAGKFATGSSVSKTPQGEEEIVIQGDVGDEIVEMIRQQVGALKGVPADQITRVEVKKKKEA 193          
BLAST of CN189044 vs. ExPASy Swiss-Prot
Match: DENR_YARLI (Translation machinery-associated protein 22 OS=Yarrowia lipolytica GN=TMA22 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.150e-22
Identity = 64/178 (35.96%), Postives = 87/178 (48.88%), Query Frame = 2
Query:   89 PVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLXXXXXXXXXXVXXXXXXXXXXXXXADGATSGQTSSSKQEEVKRL-----------PGGKIKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFIT 589
            P  VLYC +C+LP EYCEFG  F++CK WL  N  EL+  L                          +   +   S+ KQEE+ R               ++ KK   +VVI+++ R+KRK I  V GL++F + L   SK    KFATGASV K    KE+I +QGD+   + E IT
Sbjct:    6 PRTVLYCGVCTLPPEYCEFGGAFKRCKAWLEDNDQELFAQLYSVEAL-------------------TNAVQASSISAEKQEEIDRKLQKQQQKDEAKAERELLKKLASKVVIKRIERSKRKRIISVSGLEVFELDLKKLSKTFSSKFATGASVTKTADGKEEIVIQGDVGDGVEELIT 164          
BLAST of CN189044 vs. ExPASy Swiss-Prot
Match: DENR_DEBHA (Translation machinery-associated protein 22 OS=Debaryomyces hansenii GN=TMA22 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.150e-22
Identity = 59/188 (31.38%), Postives = 93/188 (49.47%), Query Frame = 2
Query:   89 PVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLXXXXXXXXXXVXXXXXXXXXXXXXADGATSGQTSSSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW--PAVPETAIYFIEDGKK 646
            P  + YC +C+ P EYCEFG  F++CK WL +N PEL+  L                                Q    KQ + +     +++KK   +V I+++ RNKRK +  + GL++F + +   +K    KFATGASV K   +K++I VQGD+S +  ++I       A+ E  +  I++ KK
Sbjct:    6 PKNIEYCEVCTFPPEYCEFGLSFKRCKEWLQENQPELFEKLYSADALANATSTLSLEKEQKI----------SQEMEKKQAKEEAKLERELQKKLSSKVTIKRIERNKRKHVISISGLEVFNIDMKKLAKTFASKFATGASVTKNAEKKDEIIVQGDVSDEAKDYIEKLLQEKALDEVKVEQIDEKKK 183          
BLAST of CN189044 vs. ExPASy Swiss-Prot
Match: DENR_MAGGR (Translation machinery-associated protein 22 OS=Magnaporthe grisea GN=TMA22 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.713e-21
Identity = 60/188 (31.91%), Postives = 91/188 (48.40%), Query Frame = 2
Query:   80 KPQPVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLXXXXXXXXXXVXXXXXXXXXXXXXADGATSGQTSSSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFIEDGK 643
            +PQ   V YC        YCE+G   +KC+ WL +N  E+Y  +                            A   + + +K  +          K ++  V ++++ RNKRK +T V GL+ FG++L   +K  GKKFATG+SV K  +  E+I VQGD+S +I EFI + +  VPE  I  ++D K
Sbjct:   13 EPQGREVTYCG-----GIYCEYGGTVKKCQDWLQRNNQEMYDRIWSPEALQAATAALSVEAQQRAEKDAKKKAAKAEAAEAKHAD----------KLKKSVVTVKRIERNKRKYVTSVSGLESFGLELKKVAKDFGKKFATGSSVTKVASGGEEIVVQGDVSDEIKEFIVEKYKDVPEDNIELVDDKK 185          
BLAST of CN189044 vs. ExPASy Swiss-Prot
Match: DENR_KLULA (Translation machinery-associated protein 22 OS=Kluyveromyces lactis GN=TMA22 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.713e-21
Identity = 52/163 (31.90%), Postives = 79/163 (48.47%), Query Frame = 2
Query:   98 VLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLXXXXXXXXXXVXXXXXXXXXXXXXADGATSGQTSSSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFI 586
            V+YC +C  PAEYCEF   F++CK WL +N PELY              +                    +     +EE       ++ KK   +VVI +  R KRKC+  + GL++F + +   SK    KFATG S+ K   +KE++ VQGD++ ++  +I
Sbjct:    6 VIYCGVCDFPAEYCEFSGKFKRCKAWLQENHPELYTKWYGDVTEDVSKQLAESSIGDEREEKLEKALEKLERKQQAREE------RELAKKLSSKVVIRREARTKRKCMIAISGLEVFEIDMKKLSKTFASKFATGCSISKNAEKKEEVIVQGDLADEVEAYI 162          
BLAST of CN189044 vs. ExPASy Swiss-Prot
Match: DENR_PICST (Translation machinery-associated protein 22 OS=Pichia stipitis GN=TMA22 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.657e-20
Identity = 60/177 (33.90%), Postives = 93/177 (52.54%), Query Frame = 2
Query:   98 VLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLXXXXXXXXXXVXXXXXXXXXXXXXADGATSGQTSS---SKQEEVKR-LPGGKIKKKERQE----------VVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFI 586
            V YC +CS P EYCEFG   ++CK WL  N  EL+  +                         +D A + QTS+    +QE++ + L   ++K++ +QE          V+I+++ RN+RK I  + GL++F + +   +K    KFATGASV K   +KE+I VQGD+S +  E+I
Sbjct:    9 VYYCGVCSFPPEYCEFGVSLKRCKDWLQDNNQELFDKIY------------------------SDDALATQTSTLSIERQEKISQELAKKQLKEEAKQERELQKKLASKVLIKRIERNRRKHIISISGLEVFNIDMKKLAKTFASKFATGASVTKTADKKEEILVQGDVSDEAKEYI 161          
BLAST of CN189044 vs. ExPASy Swiss-Prot
Match: DENR_ASHGO (Translation machinery-associated protein 22 OS=Ashbya gossypii GN=TMA22 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.124e-19
Identity = 57/179 (31.84%), Postives = 90/179 (50.28%), Query Frame = 2
Query:   95 RVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLXXXXXXXXXXVXXXXXXXXXXXXXADGATS--GQTSSSKQEE------VKRLPGGKIKKKERQ-------EVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFI 586
            +V+YC +CSLP EYCEF     +CK WL ++  EL+  L                          DG  +  GQ+S  ++ E      +++L   +  K++R+        VVI +  R KRKC+ +V GL++F + +   +K    KFATG SV K   +KE++ VQGDI+ ++  +I
Sbjct:    4 KVVYCGVCSLPPEYCEFTGKIRRCKVWLHEHDQELFAQLYGDDKED------------------VDGVAARLGQSSIGEEREEQLEKKLQKLQAREESKEQRELARKLSSRVVIRREARTKRKCMVVVAGLEVFEIDMKKLAKTFASKFATGCSVSKNVEKKEEVVVQGDIADEVEAYI 164          
BLAST of CN189044 vs. ExPASy Swiss-Prot
Match: DENR_LODEL (Translation machinery-associated protein 22 OS=Lodderomyces elongisporus GN=TMA22 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.551e-18
Identity = 49/173 (28.32%), Postives = 84/173 (48.55%), Query Frame = 2
Query:   89 PVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLXXXXXXXXXXVXXXXXXXXXXXXXADGATSGQTSSSKQEEVKRLPG-------GKIKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFI 586
            P ++ YC +C+ P E+CEFG    +C+ WL    PEL+  +                             +S    +  Q E+ +           ++ KK+  +++I+++ RNKRK I  + GL++F ++    +K    KFATGASVVK   + +++ VQGD+S +  E+I
Sbjct:    6 PKQITYCGVCTWPLEFCEFGISLPRCQSWLASKHPELFSTVYPNTPNPESVSASAPSADELASKLELATLSSDPKEAKIQAELLKKQAKHQLKQEKELTKKQNSKIIIKRIERNKRKHIISISGLEVFQIEPKKLAKTFASKFATGASVVKNAEKLDEVVVQGDVSDEAKEYI 178          
BLAST of CN189044 vs. ExPASy Swiss-Prot
Match: DENR_VANPO (Translation machinery-associated protein 22 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=TMA22 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.893e-18
Identity = 52/171 (30.41%), Postives = 86/171 (50.29%), Query Frame = 2
Query:   98 VLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLXXXXXXXXXXVXXXXXXXXXXXXXADGATSGQTSSSK-QEEVKRLPGGKIKKKERQ-------EVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFI 586
            V+YC ICS P EYCEF    ++CK WL +N  ELY  L                            ++ G+    K ++++ RL   +  +++R+       +VVI++  R KRK I  + GL++F + +   +K    KFATG SV K   +K++I +QGD+  ++ ++I
Sbjct:    5 VVYCGICSYPPEYCEFSGKLKRCKVWLSENDTELYAKLYGNEIDEEVANA----------ANKLGSSSIGEAREEKLEKDLLRLQAKQENREQRELAKKLSSKVVIKREARTKRKFIVAISGLEVFEIDMKKLAKTFASKFATGCSVSKNAEKKDEIVIQGDVLEEVEKYI 165          
BLAST of CN189044 vs. ExPASy Swiss-Prot
Match: DENR_CANGA (Translation machinery-associated protein 22 OS=Candida glabrata GN=TMA22 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.893e-18
Identity = 49/163 (30.06%), Postives = 80/163 (49.08%), Query Frame = 2
Query:   98 VLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLXXXXXXXXXXVXXXXXXXXXXXXXADGATSGQTSSSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFI 586
            V+YC +C+ P +YCEF    ++CK WL +N  +LY  L                                Q   +KQE  ++    ++ KK   +V++++  R KRK I  + GL++F + +   +K    KFATG SV K   +KE++ VQGD+  ++V +I
Sbjct:    5 VVYCGVCTYPIDYCEFSGKLKRCKVWLKENHADLYDKLYSEDDAAAASLSAKLAESSIGEAREEKLEKDLQKLQTKQENKEQR---ELAKKLSSKVIVKREARTKRKYIVAISGLEVFEIDMKKLAKTFASKFATGCSVSKNAEKKEEVVVQGDVLDEVVAYI 164          
The following BLAST results are available for this feature:
BLAST of CN189044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
DENR_CRYNE7.946e-2336.13Translation machinery-associated protein 22 OS=Cry... [more]
DENR_YARLI5.150e-2235.96Translation machinery-associated protein 22 OS=Yar... [more]
DENR_DEBHA5.150e-2231.38Translation machinery-associated protein 22 OS=Deb... [more]
DENR_MAGGR9.713e-2131.91Translation machinery-associated protein 22 OS=Mag... [more]
DENR_KLULA9.713e-2131.90Translation machinery-associated protein 22 OS=Klu... [more]
DENR_PICST1.657e-2033.90Translation machinery-associated protein 22 OS=Pic... [more]
DENR_ASHGO3.124e-1931.84Translation machinery-associated protein 22 OS=Ash... [more]
DENR_LODEL1.551e-1828.32Translation machinery-associated protein 22 OS=Lod... [more]
DENR_VANPO5.893e-1830.41Translation machinery-associated protein 22 OS=Van... [more]
DENR_CANGA5.893e-1830.06Translation machinery-associated protein 22 OS=Can... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D17_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189044 ID=CN189044; Name=CN189044; organism=Citrus sinensis; type=EST; length=733bp
GCGGTAGAGAACAAAAGAGAAGAGCAAATTGATCGGACAGAACCTGAATA
CAATAATATAATTTTACTGGATGGCAGAGAAACCTCAACCAGTGCGTGTT
CTGTATTGTTCAATATGTTCTCTTCCTGCGGAGTACTGTGAATTCGGTCC
TGACTTTGAGAAATGCAAACCTTGGTTGATCAAAAACGCTCCTGAATTAT
ACCCAGATCTCCTTAAAGAAGCAAATGAAAAGGAGGCTGAGAAGGTCTCT
GGGCAGCTTCAATTATTTGGTCTCTCTTCAGGCGGTGCTGATGGAGCTAC
TTCTGGGCAAACATCATCGTCTAAGCAAGAAGAAGTTAAACGTCTTCCTG
GTGGAAAAATAAAGAAGAAAGAAAGACAAGAAGTTGTTATTGAAAAAGTT
GTACGCAACAAGCGCAAATGTATAACCATTGTGAAGGGCCTGGACCTGTT
TGGTGTTAAACTTAGTGATGCTTCTAAAAAGCTTGGGAAAAAGTTTGCCA
CTGGAGCATCTGTTGTTAAGGGCCCAACTGAGAAAGAGCAAATTGATGTT
CAAGGGGACATATCCTATGACATTGTGGAATTCATTACAGACACCTGGCC
TGCTGTGCCCGAAACTGCTATATATTTCATTGAAGACGGGAAAAAGGTTG
CAGCCGCATAATGTTAGGAGCTTTTTCAAAAGGGTGGTAGTTTCAATTTG
ACAAAAAGGAGCCTATAAACTGCTCATTTTTTT
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